Warning: Permanently added '13.220.40.238' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8992930-fedora-rawhide-i386 --chroot fedora-rawhide-i386 Version: 1.3 PID: 9082 Logging PID: 9083 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 8992930, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-i386', 'enable_net': False, 'fedora_review': False, 'git_hash': '8c18f5e1275f4d39461eeb40f0d33f569708d321', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/avogadro2-libs', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'avogadro2-libs', 'package_version': '1.99.0-5', 'project_dirname': 'openblas-0.3.23', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-rawhide-i386/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/sagitter', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': None, 'submitter': 'https://src.fedoraproject.org/user/sagitter', 'tags': [], 'task_id': '8992930-fedora-rawhide-i386', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/avogadro2-libs /var/lib/copr-rpmbuild/workspace/workdir-bfqokyuh/avogadro2-libs --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/avogadro2-libs', '/var/lib/copr-rpmbuild/workspace/workdir-bfqokyuh/avogadro2-libs', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-bfqokyuh/avogadro2-libs'... Running: git checkout 8c18f5e1275f4d39461eeb40f0d33f569708d321 -- cmd: ['git', 'checkout', '8c18f5e1275f4d39461eeb40f0d33f569708d321', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-bfqokyuh/avogadro2-libs rc: 0 stdout: stderr: Note: switching to '8c18f5e1275f4d39461eeb40f0d33f569708d321'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 8c18f5e automatic import of avogadro2-libs Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-bfqokyuh/avogadro2-libs rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading avogadrolibs-1.99.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o avogadrolibs-1.99.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/avogadro2-libs/avogadrolibs-1.99.0.tar.gz/md5/d8499508e5a67e01bcfec367e3df23e9/avogadrolibs-1.99.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 4744k 100 4744k 0 0 249M 0 --:--:-- --:--:-- --:--:-- 257M INFO: Reading stdout from command: md5sum avogadrolibs-1.99.0.tar.gz INFO: Downloading avogenerators-1.98.0.tar.gz INFO: Calling: curl -H Pragma: -o avogenerators-1.98.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/avogadro2-libs/avogenerators-1.98.0.tar.gz/md5/74b508114f30f469256a19ebc4996f87/avogenerators-1.98.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 15676 100 15676 0 0 1565k 0 --:--:-- --:--:-- --:--:-- 1700k INFO: Reading stdout from command: md5sum avogenerators-1.98.0.tar.gz INFO: Downloading crystals-1.98.0.tar.gz INFO: Calling: curl -H Pragma: -o crystals-1.98.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/avogadro2-libs/crystals-1.98.0.tar.gz/md5/07733a52b8a6572adb353abb6044d6f6/crystals-1.98.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 53.3M 100 53.3M 0 0 524M 0 --:--:-- --:--:-- --:--:-- 522M INFO: Reading stdout from command: md5sum crystals-1.98.0.tar.gz INFO: Downloading fragments-1.99.0.tar.gz INFO: Calling: curl -H Pragma: -o fragments-1.99.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/avogadro2-libs/fragments-1.99.0.tar.gz/md5/4dd9a11d0e07503cf468ea97c5e94359/fragments-1.99.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 2493k 100 2493k 0 0 154M 0 --:--:-- --:--:-- --:--:-- 162M INFO: Reading stdout from command: md5sum fragments-1.99.0.tar.gz INFO: Downloading molecules-1.98.0.tar.gz INFO: Calling: curl -H Pragma: -o molecules-1.98.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/avogadro2-libs/molecules-1.98.0.tar.gz/md5/789264f5a03f37bf336d2904abe9cd3d/molecules-1.98.0.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 9720k 100 9720k 0 0 350M 0 --:--:-- --:--:-- --:--:-- 351M INFO: Reading stdout from command: md5sum molecules-1.98.0.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-bfqokyuh/avogadro2-libs/avogadro2-libs.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-bfqokyuh/avogadro2-libs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1746264360.351363 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.1 starting (python version = 3.13.0, NVR = mock-6.1-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-bfqokyuh/avogadro2-libs/avogadro2-libs.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-bfqokyuh/avogadro2-libs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1746264360.351363 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-bfqokyuh/avogadro2-libs/avogadro2-libs.spec) Config(fedora-rawhide-i686) Start: clean chroot Finish: clean chroot Mock Version: 6.1 INFO: Mock Version: 6.1 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1746264360.351363/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-ccf5112a-3665-4e97-8bd1-d907ad907204 INFO: Checking that b8976281d290866eba4972804176426a2dcf8d295fdfa3825978c5e0e5950322 image matches host's architecture INFO: Copy content of container b8976281d290866eba4972804176426a2dcf8d295fdfa3825978c5e0e5950322 to /var/lib/mock/fedora-rawhide-i686-bootstrap-1746264360.351363/root INFO: mounting b8976281d290866eba4972804176426a2dcf8d295fdfa3825978c5e0e5950322 with podman image mount INFO: image b8976281d290866eba4972804176426a2dcf8d295fdfa3825978c5e0e5950322 as /var/lib/containers/storage/overlay/d20de2534382e904277801e67824bfb7fb34b6903375bf6cf13554efdc416c49/merged INFO: umounting image b8976281d290866eba4972804176426a2dcf8d295fdfa3825978c5e0e5950322 (/var/lib/containers/storage/overlay/d20de2534382e904277801e67824bfb7fb34b6903375bf6cf13554efdc416c49/merged) with podman image umount INFO: Removing image mock-bootstrap-ccf5112a-3665-4e97-8bd1-d907ad907204 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1746264360.351363/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-5.99.90-4.fc43.x86_64 rpm-sequoia-1.8.0-1.fc43.x86_64 dnf5-5.2.13.1-1.fc43.x86_64 dnf5-plugins-5.2.13.1-1.fc43.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Additional repo http_kojipkgs_fedorapr 100% | 112.9 MiB/s | 12.8 MiB | 00m00s Copr repository 100% | 45.4 MiB/s | 2.7 MiB | 00m00s local 100% | 130.7 MiB/s | 12.7 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash i686 5.2.37-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.3 MiB bzip2 i686 1.0.8-20.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 89.6 KiB coreutils i686 9.7-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.3 MiB cpio i686 2.15-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB diffutils i686 3.12-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB fedora-release noarch 43-0.15 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B findutils i686 1:4.10.0-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 MiB gawk i686 5.3.2-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB glibc-minimal-langpack i686 2.41.9000-12.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B grep i686 3.12-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB gzip i686 1.13-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 387.9 KiB info i686 7.2-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 360.4 KiB patch i686 2.8-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 233.8 KiB redhat-rpm-config noarch 343-4.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 185.6 KiB rpm-build i686 5.99.90-4.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 261.5 KiB sed i686 4.9-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 860.4 KiB shadow-utils i686 2:4.17.4-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.9 MiB tar i686 2:1.35-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB unzip i686 6.0-66.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 387.7 KiB util-linux i686 2.40.4-7.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.2 MiB which i686 2.23-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.0 KiB xz i686 1:5.8.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 MiB Installing dependencies: add-determinism i686 0.6.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.4 MiB alternatives i686 1.32-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 61.4 KiB ansible-srpm-macros noarch 1-17.1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.7 KiB audit-libs i686 4.0.3-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 361.8 KiB binutils i686 2.44-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 26.0 MiB build-reproducibility-srpm-macros noarch 0.6.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 735.0 B bzip2-libs i686 1.0.8-20.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 83.8 KiB ca-certificates noarch 2024.2.69_v8.0.401-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB coreutils-common i686 9.7-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.3 MiB crypto-policies noarch 20250402-2.git86c0178.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 141.5 KiB curl i686 8.14.0~rc1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 480.4 KiB cyrus-sasl-lib i686 2.1.28-30.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.5 MiB debugedit i686 5.1-6.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 202.3 KiB dwz i686 0.15-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 309.0 KiB ed i686 1.21-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 145.3 KiB efi-srpm-macros noarch 6-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.1 KiB elfutils i686 0.192-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB elfutils-debuginfod-client i686 0.192-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 82.2 KiB elfutils-default-yama-scope noarch 0.192-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 KiB elfutils-libelf i686 0.192-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB elfutils-libs i686 0.192-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 725.4 KiB fedora-gpg-keys noarch 43-0.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 129.0 KiB fedora-release-common noarch 43-0.15 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 20.4 KiB fedora-release-identity-basic noarch 43-0.15 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 664.0 B fedora-repos noarch 43-0.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.9 KiB fedora-repos-rawhide noarch 43-0.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 KiB file i686 5.46-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 95.2 KiB file-libs i686 5.46-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.9 MiB filesystem i686 3.18-40.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 94.0 B filesystem-srpm-macros noarch 3.18-40.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38.2 KiB fonts-srpm-macros noarch 1:2.0.5-21.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 55.8 KiB forge-srpm-macros noarch 0.4.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38.9 KiB fpc-srpm-macros noarch 1.3-14.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.0 B gdb-minimal i686 16.3-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13.8 MiB gdbm-libs i686 1:1.23-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 948.8 KiB rpm-sequoia i686 1.8.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.8 MiB rpm-sign-libs i686 5.99.90-4.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30.9 KiB rust-srpm-macros noarch 26.3-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.15.0-23.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 724.7 KiB sqlite-libs i686 3.49.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB systemd-libs i686 257.5-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB systemd-standalone-sysusers i686 257.5-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 272.5 KiB tpm2-tss i686 4.1.3-7.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB tree-sitter-srpm-macros noarch 0.2.4-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.5 KiB util-linux-core i686 2.40.4-7.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 MiB xxhash-libs i686 0.8.3-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 113.5 KiB xz-libs i686 1:5.8.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 233.2 KiB zig-srpm-macros noarch 1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip i686 3.0-43.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694.3 KiB zlib-ng-compat i686 2.2.4-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 156.9 KiB zstd i686 1.5.7-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB Installing groups: build Transaction Summary: Installing: 161 packages Total size of inbound packages is 59 MiB. Need to download 59 MiB. After this operation, 196 MiB extra will be used (install 196 MiB, remove 0 B). [ 1/161] bzip2-0:1.0.8-20.fc42.i686 100% | 2.1 MiB/s | 52.7 KiB | 00m00s [ 2/161] bash-0:5.2.37-3.fc43.i686 100% | 49.0 MiB/s | 1.8 MiB | 00m00s [ 3/161] coreutils-0:9.7-1.fc43.i686 100% | 31.1 MiB/s | 1.2 MiB | 00m00s [ 4/161] cpio-0:2.15-2.fc41.i686 100% | 16.7 MiB/s | 290.8 KiB | 00m00s [ 5/161] fedora-release-0:43-0.15.noar 100% | 3.7 MiB/s | 15.3 KiB | 00m00s [ 6/161] diffutils-0:3.12-1.fc43.i686 100% | 63.5 MiB/s | 390.4 KiB | 00m00s [ 7/161] glibc-minimal-langpack-0:2.41 100% | 5.6 MiB/s | 23.1 KiB | 00m00s [ 8/161] findutils-1:4.10.0-5.fc42.i68 100% | 67.4 MiB/s | 551.9 KiB | 00m00s [ 9/161] gawk-0:5.3.2-1.fc43.i686 100% | 91.2 MiB/s | 1.1 MiB | 00m00s [ 10/161] grep-0:3.12-1.fc43.i686 100% | 41.0 MiB/s | 293.6 KiB | 00m00s [ 11/161] gzip-0:1.13-3.fc42.i686 100% | 31.8 MiB/s | 162.6 KiB | 00m00s [ 12/161] info-0:7.2-3.fc42.i686 100% | 45.6 MiB/s | 186.7 KiB | 00m00s [ 13/161] redhat-rpm-config-0:343-4.fc4 100% | 18.2 MiB/s | 74.5 KiB | 00m00s [ 14/161] patch-0:2.8-1.fc43.i686 100% | 23.1 MiB/s | 118.3 KiB | 00m00s [ 15/161] rpm-build-0:5.99.90-4.fc43.i6 100% | 24.8 MiB/s | 126.8 KiB | 00m00s [ 16/161] sed-0:4.9-4.fc42.i686 100% | 50.6 MiB/s | 310.6 KiB | 00m00s [ 17/161] shadow-utils-2:4.17.4-1.fc43. 100% | 105.4 MiB/s | 1.3 MiB | 00m00s [ 18/161] unzip-0:6.0-66.fc42.i686 100% | 29.5 MiB/s | 181.4 KiB | 00m00s [ 19/161] tar-2:1.35-5.fc42.i686 100% | 94.1 MiB/s | 866.8 KiB | 00m00s [ 20/161] which-0:2.23-1.fc42.i686 100% | 8.2 MiB/s | 41.8 KiB | 00m00s [ 21/161] util-linux-0:2.40.4-7.fc43.i6 100% | 104.5 MiB/s | 1.1 MiB | 00m00s [ 22/161] xz-1:5.8.1-1.fc43.i686 100% | 45.7 MiB/s | 561.6 KiB | 00m00s [ 23/161] audit-libs-0:4.0.3-2.fc42.i68 100% | 31.3 MiB/s | 128.3 KiB | 00m00s [ 24/161] glibc-0:2.41.9000-12.fc43.i68 100% | 140.3 MiB/s | 2.0 MiB | 00m00s [ 25/161] xz-libs-1:5.8.1-1.fc43.i686 100% | 13.4 MiB/s | 123.7 KiB | 00m00s [ 26/161] libblkid-0:2.40.4-7.fc43.i686 100% | 26.3 MiB/s | 134.7 KiB | 00m00s [ 27/161] libcap-ng-0:0.8.5-4.fc42.i686 100% | 6.4 MiB/s | 32.9 KiB | 00m00s [ 28/161] filesystem-0:3.18-40.fc43.i68 100% | 109.5 MiB/s | 1.3 MiB | 00m00s [ 29/161] libmount-0:2.40.4-7.fc43.i686 100% | 31.5 MiB/s | 161.2 KiB | 00m00s [ 30/161] libfdisk-0:2.40.4-7.fc43.i686 100% | 28.6 MiB/s | 175.9 KiB | 00m00s [ 31/161] libselinux-0:3.8-1.fc42.i686 100% | 24.9 MiB/s | 102.0 KiB | 00m00s [ 32/161] libsmartcols-0:2.40.4-7.fc43. 100% | 20.4 MiB/s | 83.7 KiB | 00m00s [ 33/161] libuuid-0:2.40.4-7.fc43.i686 100% | 6.6 MiB/s | 27.0 KiB | 00m00s [ 34/161] ncurses-libs-0:6.5-5.20250125 100% | 57.5 MiB/s | 353.0 KiB | 00m00s [ 35/161] pam-libs-0:1.7.0-4.fc42.i686 100% | 14.8 MiB/s | 60.8 KiB | 00m00s [ 36/161] readline-0:8.2-13.fc43.i686 100% | 35.5 MiB/s | 218.2 KiB | 00m00s [ 37/161] util-linux-core-0:2.40.4-7.fc 100% | 73.8 MiB/s | 529.2 KiB | 00m00s [ 38/161] systemd-libs-0:257.5-2.fc43.i 100% | 90.5 MiB/s | 834.4 KiB | 00m00s [ 39/161] bzip2-libs-0:1.0.8-20.fc42.i6 100% | 8.5 MiB/s | 43.4 KiB | 00m00s [ 40/161] libacl-0:2.3.2-3.fc42.i686 100% | 5.9 MiB/s | 24.3 KiB | 00m00s [ 41/161] zlib-ng-compat-0:2.2.4-2.fc43 100% | 5.6 MiB/s | 86.3 KiB | 00m00s [ 42/161] libcap-0:2.76-1.fc43.i686 100% | 21.7 MiB/s | 88.8 KiB | 00m00s [ 43/161] libgcc-0:15.1.1-1.fc43.i686 100% | 28.0 MiB/s | 143.5 KiB | 00m00s [ 44/161] libeconf-0:0.7.6-1.fc43.i686 100% | 9.1 MiB/s | 37.2 KiB | 00m00s [ 45/161] libsemanage-0:3.8-1.fc42.i686 100% | 25.9 MiB/s | 132.8 KiB | 00m00s [ 46/161] libxcrypt-0:4.4.38-7.fc43.i68 100% | 31.7 MiB/s | 129.7 KiB | 00m00s [ 47/161] setup-0:2.15.0-23.fc43.noarch 100% | 36.9 MiB/s | 151.1 KiB | 00m00s [ 48/161] debugedit-0:5.1-6.fc43.i686 100% | 13.5 MiB/s | 82.8 KiB | 00m00s [ 49/161] elfutils-0:0.192-8.fc42.i686 100% | 62.4 MiB/s | 574.9 KiB | 00m00s [ 50/161] elfutils-libelf-0:0.192-8.fc4 100% | 21.0 MiB/s | 214.8 KiB | 00m00s [ 51/161] file-0:5.46-1.fc42.i686 100% | 7.9 MiB/s | 48.8 KiB | 00m00s [ 52/161] binutils-0:2.44-3.fc43.i686 100% | 239.6 MiB/s | 6.0 MiB | 00m00s [ 53/161] libarchive-0:3.7.7-4.fc43.i68 100% | 44.4 MiB/s | 454.7 KiB | 00m00s [ 54/161] libstdc++-0:15.1.1-1.fc43.i68 100% | 105.8 MiB/s | 975.1 KiB | 00m00s [ 55/161] pkgconf-pkg-config-0:2.3.0-2. 100% | 3.2 MiB/s | 9.9 KiB | 00m00s [ 56/161] popt-0:1.19-8.fc42.i686 100% | 15.0 MiB/s | 61.5 KiB | 00m00s [ 57/161] rpm-0:5.99.90-4.fc43.i686 100% | 102.7 MiB/s | 525.9 KiB | 00m00s [ 58/161] rpm-build-libs-0:5.99.90-4.fc 100% | 26.2 MiB/s | 134.3 KiB | 00m00s [ 59/161] rpm-libs-0:5.99.90-4.fc43.i68 100% | 83.9 MiB/s | 429.3 KiB | 00m00s [ 60/161] curl-0:8.14.0~rc1-1.fc43.i686 100% | 29.5 MiB/s | 241.3 KiB | 00m00s [ 61/161] zstd-0:1.5.7-1.fc43.i686 100% | 53.5 MiB/s | 492.7 KiB | 00m00s [ 62/161] glibc-gconv-extra-0:2.41.9000 100% | 154.3 MiB/s | 1.5 MiB | 00m00s [ 63/161] ansible-srpm-macros-0:1-17.1. 100% | 4.0 MiB/s | 20.3 KiB | 00m00s [ 64/161] build-reproducibility-srpm-ma 100% | 2.9 MiB/s | 11.7 KiB | 00m00s [ 65/161] efi-srpm-macros-0:6-3.fc43.no 100% | 5.5 MiB/s | 22.5 KiB | 00m00s [ 66/161] filesystem-srpm-macros-0:3.18 100% | 6.3 MiB/s | 25.7 KiB | 00m00s [ 67/161] dwz-0:0.15-9.fc42.i686 100% | 27.3 MiB/s | 140.0 KiB | 00m00s [ 68/161] fonts-srpm-macros-1:2.0.5-21. 100% | 6.6 MiB/s | 27.1 KiB | 00m00s [ 69/161] forge-srpm-macros-0:0.4.0-2.f 100% | 4.8 MiB/s | 19.9 KiB | 00m00s [ 70/161] fpc-srpm-macros-0:1.3-14.fc42 100% | 2.0 MiB/s | 8.0 KiB | 00m00s [ 71/161] ghc-srpm-macros-0:1.9.2-2.fc4 100% | 2.2 MiB/s | 9.2 KiB | 00m00s [ 72/161] gnat-srpm-macros-0:6-7.fc42.n 100% | 2.1 MiB/s | 8.6 KiB | 00m00s [ 73/161] go-srpm-macros-0:3.6.0-7.fc43 100% | 6.7 MiB/s | 27.6 KiB | 00m00s [ 74/161] kernel-srpm-macros-0:1.0-25.f 100% | 3.2 MiB/s | 9.9 KiB | 00m00s [ 75/161] lua-srpm-macros-0:1-15.fc42.n 100% | 2.2 MiB/s | 8.9 KiB | 00m00s [ 76/161] ocaml-srpm-macros-0:10-4.fc42 100% | 2.2 MiB/s | 9.2 KiB | 00m00s [ 77/161] openblas-srpm-macros-0:2-19.f 100% | 2.5 MiB/s | 7.8 KiB | 00m00s [ 78/161] package-notes-srpm-macros-0:0 100% | 2.3 MiB/s | 9.3 KiB | 00m00s [ 79/161] perl-srpm-macros-0:1-57.fc42. 100% | 2.1 MiB/s | 8.5 KiB | 00m00s [ 80/161] pyproject-srpm-macros-0:1.18. 100% | 3.4 MiB/s | 13.9 KiB | 00m00s [ 81/161] python-srpm-macros-0:3.13-5.f 100% | 5.7 MiB/s | 23.2 KiB | 00m00s [ 82/161] qt5-srpm-macros-0:5.15.16-1.f 100% | 2.1 MiB/s | 8.8 KiB | 00m00s [ 83/161] qt6-srpm-macros-0:6.9.0-2.fc4 100% | 2.3 MiB/s | 9.4 KiB | 00m00s [ 84/161] tree-sitter-srpm-macros-0:0.2 100% | 3.0 MiB/s | 12.5 KiB | 00m00s [ 85/161] rust-srpm-macros-0:26.3-4.fc4 100% | 2.9 MiB/s | 11.7 KiB | 00m00s [ 86/161] zig-srpm-macros-0:1-4.fc42.no 100% | 2.7 MiB/s | 8.2 KiB | 00m00s [ 87/161] pkgconf-0:2.3.0-2.fc42.i686 100% | 11.0 MiB/s | 45.1 KiB | 00m00s [ 88/161] zip-0:3.0-43.fc42.i686 100% | 51.9 MiB/s | 266.0 KiB | 00m00s [ 89/161] pkgconf-m4-0:2.3.0-2.fc42.noa 100% | 3.5 MiB/s | 14.2 KiB | 00m00s [ 90/161] libpkgconf-0:2.3.0-2.fc42.i68 100% | 10.1 MiB/s | 41.5 KiB | 00m00s [ 91/161] ed-0:1.21-2.fc42.i686 100% | 15.9 MiB/s | 81.4 KiB | 00m00s [ 92/161] libattr-0:2.5.2-5.fc42.i686 100% | 2.8 MiB/s | 17.2 KiB | 00m00s [ 93/161] ncurses-base-0:6.5-5.20250125 100% | 15.5 MiB/s | 63.5 KiB | 00m00s [ 94/161] libsepol-0:3.8-1.fc42.i686 100% | 58.4 MiB/s | 358.9 KiB | 00m00s [ 95/161] pcre2-0:10.45-1.fc43.i686 100% | 50.2 MiB/s | 257.1 KiB | 00m00s [ 96/161] libxml2-0:2.12.10-1.fc43.i686 100% | 101.4 MiB/s | 726.6 KiB | 00m00s [ 97/161] libzstd-0:1.5.7-1.fc43.i686 100% | 60.1 MiB/s | 307.8 KiB | 00m00s [ 98/161] lz4-libs-0:1.10.0-2.fc42.i686 100% | 15.4 MiB/s | 78.9 KiB | 00m00s [ 99/161] glibc-common-0:2.41.9000-12.f 100% | 51.4 MiB/s | 315.9 KiB | 00m00s [100/161] openssl-libs-1:3.5.0-3.fc43.i 100% | 185.7 MiB/s | 2.6 MiB | 00m00s [101/161] mpfr-0:4.2.2-1.fc43.i686 100% | 53.7 MiB/s | 385.1 KiB | 00m00s [102/161] fedora-release-common-0:43-0. 100% | 5.1 MiB/s | 26.3 KiB | 00m00s [103/161] gmp-1:6.3.0-3.fc43.i686 100% | 15.3 MiB/s | 313.3 KiB | 00m00s [104/161] file-libs-0:5.46-1.fc42.i686 100% | 76.1 MiB/s | 857.6 KiB | 00m00s [105/161] elfutils-debuginfod-client-0: 100% | 5.2 MiB/s | 47.8 KiB | 00m00s [106/161] elfutils-libs-0:0.192-8.fc42. 100% | 29.3 MiB/s | 299.6 KiB | 00m00s [107/161] coreutils-common-0:9.7-1.fc43 100% | 159.6 MiB/s | 2.1 MiB | 00m00s [108/161] alternatives-0:1.32-1.fc43.i6 100% | 6.8 MiB/s | 42.0 KiB | 00m00s [109/161] add-determinism-0:0.6.0-1.fc4 100% | 93.8 MiB/s | 961.0 KiB | 00m00s [110/161] jansson-0:2.14-2.fc42.i686 100% | 9.2 MiB/s | 47.1 KiB | 00m00s [111/161] lua-libs-0:5.4.7-3.fc43.i686 100% | 28.9 MiB/s | 148.1 KiB | 00m00s [112/161] rpm-sequoia-0:1.8.0-1.fc43.i6 100% | 112.6 MiB/s | 1.0 MiB | 00m00s [113/161] libgomp-0:15.1.1-1.fc43.i686 100% | 51.0 MiB/s | 365.8 KiB | 00m00s [114/161] sqlite-libs-0:3.49.0-1.fc43.i 100% | 98.2 MiB/s | 804.2 KiB | 00m00s [115/161] rpm-sign-libs-0:5.99.90-4.fc4 100% | 7.3 MiB/s | 29.7 KiB | 00m00s [116/161] pcre2-syntax-0:10.45-1.fc43.n 100% | 39.5 MiB/s | 161.7 KiB | 00m00s [117/161] crypto-policies-0:20250402-2. 100% | 18.0 MiB/s | 73.8 KiB | 00m00s [118/161] ca-certificates-0:2024.2.69_v 100% | 131.8 MiB/s | 945.0 KiB | 00m00s [119/161] fedora-release-identity-basic 100% | 5.2 MiB/s | 16.0 KiB | 00m00s [120/161] fedora-repos-0:43-0.2.noarch 100% | 3.0 MiB/s | 9.2 KiB | 00m00s [121/161] elfutils-default-yama-scope-0 100% | 4.1 MiB/s | 12.6 KiB | 00m00s [122/161] json-c-0:0.18-2.fc42.i686 100% | 9.4 MiB/s | 48.3 KiB | 00m00s [123/161] libffi-0:3.4.7-4.fc43.i686 100% | 9.4 MiB/s | 38.4 KiB | 00m00s [124/161] p11-kit-0:0.25.5-5.fc42.i686 100% | 78.2 MiB/s | 480.4 KiB | 00m00s [125/161] p11-kit-trust-0:0.25.5-5.fc42 100% | 27.0 MiB/s | 138.1 KiB | 00m00s [126/161] ima-evm-utils-libs-0:1.6.2-5. 100% | 5.9 MiB/s | 30.0 KiB | 00m00s [127/161] libfsverity-0:1.6-2.fc42.i686 100% | 2.7 MiB/s | 19.6 KiB | 00m00s [128/161] gnupg2-0:2.4.7-3.fc43.i686 100% | 176.4 MiB/s | 2.8 MiB | 00m00s [129/161] libtasn1-0:4.20.0-1.fc43.i686 100% | 14.8 MiB/s | 75.9 KiB | 00m00s [130/161] tpm2-tss-0:4.1.3-7.fc43.i686 100% | 51.5 MiB/s | 369.0 KiB | 00m00s [131/161] libassuan-0:2.5.7-3.fc42.i686 100% | 13.6 MiB/s | 69.8 KiB | 00m00s [132/161] gnutls-0:3.8.9-5.fc43.i686 100% | 149.3 MiB/s | 1.2 MiB | 00m00s [133/161] libgcrypt-0:1.11.0-5.fc42.i68 100% | 88.9 MiB/s | 546.4 KiB | 00m00s [134/161] libgpg-error-0:1.55-1.fc43.i6 100% | 33.9 MiB/s | 242.8 KiB | 00m00s [135/161] libksba-0:1.6.7-3.fc42.i686 100% | 40.1 MiB/s | 164.4 KiB | 00m00s [136/161] npth-0:1.8-2.fc42.i686 100% | 6.4 MiB/s | 26.1 KiB | 00m00s [137/161] openldap-0:2.6.9-5.fc43.i686 100% | 54.0 MiB/s | 276.4 KiB | 00m00s [138/161] fedora-repos-rawhide-0:43-0.2 100% | 2.1 MiB/s | 8.8 KiB | 00m00s [139/161] fedora-gpg-keys-0:43-0.2.noar 100% | 20.5 MiB/s | 125.8 KiB | 00m00s [140/161] libusb1-0:1.0.28-2.fc43.i686 100% | 20.2 MiB/s | 82.9 KiB | 00m00s [141/161] libevent-0:2.1.12-15.fc42.i68 100% | 54.3 MiB/s | 277.8 KiB | 00m00s [142/161] cyrus-sasl-lib-0:2.1.28-30.fc 100% | 119.6 MiB/s | 857.3 KiB | 00m00s [143/161] libtool-ltdl-0:2.5.4-4.fc42.i 100% | 7.4 MiB/s | 38.0 KiB | 00m00s [144/161] libidn2-0:2.3.8-1.fc43.i686 100% | 41.5 MiB/s | 169.9 KiB | 00m00s [145/161] libunistring-0:1.1-9.fc42.i68 100% | 89.6 MiB/s | 550.5 KiB | 00m00s [146/161] gdbm-libs-1:1.23-9.fc42.i686 100% | 14.6 MiB/s | 59.7 KiB | 00m00s [147/161] nettle-0:3.10.1-1.fc43.i686 100% | 61.5 MiB/s | 440.7 KiB | 00m00s [148/161] xxhash-libs-0:0.8.3-2.fc42.i6 100% | 9.2 MiB/s | 46.9 KiB | 00m00s [149/161] libcurl-0:8.14.0~rc1-1.fc43.i 100% | 69.0 MiB/s | 423.7 KiB | 00m00s [150/161] systemd-standalone-sysusers-0 100% | 26.8 MiB/s | 137.3 KiB | 00m00s [151/161] krb5-libs-0:1.21.3-5.fc42.i68 100% | 112.5 MiB/s | 806.6 KiB | 00m00s [152/161] libbrotli-0:1.1.0-6.fc42.i686 100% | 67.0 MiB/s | 343.1 KiB | 00m00s [153/161] gdb-minimal-0:16.3-1.fc43.i68 100% | 200.6 MiB/s | 4.8 MiB | 00m00s [154/161] libnghttp2-0:1.65.0-1.fc43.i6 100% | 8.4 MiB/s | 77.6 KiB | 00m00s [155/161] libpsl-0:0.21.5-5.fc42.i686 100% | 10.5 MiB/s | 64.6 KiB | 00m00s [156/161] keyutils-libs-0:1.6.3-5.fc42. 100% | 6.2 MiB/s | 31.8 KiB | 00m00s [157/161] libssh-0:0.11.1-4.fc42.i686 100% | 49.0 MiB/s | 250.6 KiB | 00m00s [158/161] libcom_err-0:1.47.2-3.fc42.i6 100% | 5.3 MiB/s | 27.3 KiB | 00m00s [159/161] libssh-config-0:0.11.1-4.fc42 100% | 2.2 MiB/s | 9.0 KiB | 00m00s [160/161] libverto-0:0.3.2-10.fc42.i686 100% | 5.2 MiB/s | 21.2 KiB | 00m00s [161/161] publicsuffix-list-dafsa-0:202 100% | 14.4 MiB/s | 58.8 KiB | 00m00s -------------------------------------------------------------------------------- [161/161] Total 100% | 147.6 MiB/s | 59.5 MiB | 00m00s Running transaction [ 1/163] Verify package files 100% | 1.7 KiB/s | 161.0 B | 00m00s [ 2/163] Prepare transaction 100% | 4.0 KiB/s | 161.0 B | 00m00s [ 3/163] Installing libgcc-0:15.1.1-1. 100% | 292.3 MiB/s | 299.3 KiB | 00m00s [ 4/163] Installing publicsuffix-list- 100% | 0.0 B/s | 69.2 KiB | 00m00s [ 5/163] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/163] Installing fedora-release-ide 100% | 0.0 B/s | 920.0 B | 00m00s [ 7/163] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 8/163] Installing fedora-gpg-keys-0: 100% | 42.9 MiB/s | 175.9 KiB | 00m00s [ 9/163] Installing fedora-repos-0:43- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/163] Installing fedora-release-com 100% | 24.1 MiB/s | 24.7 KiB | 00m00s [ 11/163] Installing fedora-release-0:4 100% | 17.3 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-23.fc43.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-23.fc43.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 12/163] Installing setup-0:2.15.0-23. 100% | 59.4 MiB/s | 730.3 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 13/163] Installing filesystem-0:3.18- 100% | 2.8 MiB/s | 211.9 KiB | 00m00s [ 14/163] Installing pcre2-syntax-0:10. 100% | 269.9 MiB/s | 276.4 KiB | 00m00s [ 15/163] Installing coreutils-common-0 100% | 418.2 MiB/s | 11.3 MiB | 00m00s [ 16/163] Installing ncurses-base-0:6.5 100% | 86.0 MiB/s | 352.2 KiB | 00m00s [ 17/163] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [ 18/163] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [ 19/163] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 740.0 B | 00m00s [ 20/163] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [ 21/163] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [ 22/163] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [ 23/163] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [ 24/163] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [ 25/163] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [ 26/163] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [ 27/163] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 28/163] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [ 29/163] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [ 30/163] Installing bash-0:5.2.37-3.fc 100% | 296.5 MiB/s | 8.3 MiB | 00m00s [ 31/163] Installing glibc-common-0:2.4 100% | 73.0 MiB/s | 1.0 MiB | 00m00s [ 32/163] Installing glibc-gconv-extra- 100% | 272.6 MiB/s | 6.8 MiB | 00m00s [ 33/163] Installing glibc-0:2.41.9000- 100% | 166.6 MiB/s | 5.5 MiB | 00m00s [ 34/163] Installing ncurses-libs-0:6.5 100% | 311.2 MiB/s | 955.9 KiB | 00m00s [ 35/163] Installing glibc-minimal-lang 100% | 20.2 KiB/s | 124.0 B | 00m00s [ 36/163] Installing crypto-policies-0: 100% | 40.7 MiB/s | 166.6 KiB | 00m00s [ 37/163] Installing filesystem-srpm-ma 100% | 0.0 B/s | 38.9 KiB | 00m00s [ 38/163] Installing elfutils-default-y 100% | 408.6 KiB/s | 2.0 KiB | 00m00s [ 39/163] Installing zlib-ng-compat-0:2 100% | 154.1 MiB/s | 157.8 KiB | 00m00s [ 40/163] Installing bzip2-libs-0:1.0.8 100% | 82.9 MiB/s | 84.9 KiB | 00m00s [ 41/163] Installing libstdc++-0:15.1.1 100% | 407.1 MiB/s | 2.8 MiB | 00m00s [ 42/163] Installing xz-libs-1:5.8.1-1. 100% | 228.8 MiB/s | 234.3 KiB | 00m00s [ 43/163] Installing libuuid-0:2.40.4-7 100% | 0.0 B/s | 37.7 KiB | 00m00s [ 44/163] Installing gmp-1:6.3.0-3.fc43 100% | 359.6 MiB/s | 736.4 KiB | 00m00s [ 45/163] Installing readline-0:8.2-13. 100% | 448.6 MiB/s | 459.4 KiB | 00m00s [ 46/163] Installing popt-0:1.19-8.fc42 100% | 69.5 MiB/s | 142.4 KiB | 00m00s [ 47/163] Installing libblkid-0:2.40.4- 100% | 279.8 MiB/s | 286.5 KiB | 00m00s [ 48/163] Installing libxcrypt-0:4.4.38 100% | 291.5 MiB/s | 298.5 KiB | 00m00s [ 49/163] Installing libzstd-0:1.5.7-1. 100% | 377.3 MiB/s | 772.7 KiB | 00m00s [ 50/163] Installing elfutils-libelf-0: 100% | 392.4 MiB/s | 1.2 MiB | 00m00s [ 51/163] Installing elfutils-libs-0:0. 100% | 355.1 MiB/s | 727.3 KiB | 00m00s [ 52/163] Installing libgpg-error-0:1.5 100% | 64.4 MiB/s | 923.4 KiB | 00m00s [ 53/163] Installing libattr-0:2.5.2-5. 100% | 0.0 B/s | 27.3 KiB | 00m00s [ 54/163] Installing libacl-0:2.3.2-3.f 100% | 0.0 B/s | 38.4 KiB | 00m00s [ 55/163] Installing libtasn1-0:4.20.0- 100% | 173.2 MiB/s | 177.4 KiB | 00m00s [ 56/163] Installing libunistring-0:1.1 100% | 432.5 MiB/s | 1.7 MiB | 00m00s [ 57/163] Installing libidn2-0:2.3.8-1. 100% | 181.6 MiB/s | 557.9 KiB | 00m00s [ 58/163] Installing dwz-0:0.15-9.fc42. 100% | 27.6 MiB/s | 310.3 KiB | 00m00s [ 59/163] Installing mpfr-0:4.2.2-1.fc4 100% | 314.1 MiB/s | 964.9 KiB | 00m00s [ 60/163] Installing gawk-0:5.3.2-1.fc4 100% | 113.2 MiB/s | 1.8 MiB | 00m00s [ 61/163] Installing unzip-0:6.0-66.fc4 100% | 34.7 MiB/s | 391.2 KiB | 00m00s [ 62/163] Installing file-libs-0:5.46-1 100% | 741.8 MiB/s | 11.9 MiB | 00m00s [ 63/163] Installing file-0:5.46-1.fc42 100% | 8.6 MiB/s | 96.7 KiB | 00m00s [ 64/163] Installing libcap-ng-0:0.8.5- 100% | 0.0 B/s | 73.2 KiB | 00m00s [ 65/163] Installing audit-libs-0:4.0.3 100% | 355.4 MiB/s | 363.9 KiB | 00m00s [ 66/163] Installing libsmartcols-0:2.4 100% | 176.5 MiB/s | 180.7 KiB | 00m00s [ 67/163] Installing libeconf-0:0.7.6-1 100% | 0.0 B/s | 61.5 KiB | 00m00s [ 68/163] Installing pam-libs-0:1.7.0-4 100% | 127.6 MiB/s | 130.7 KiB | 00m00s [ 69/163] Installing libcap-0:2.76-1.fc 100% | 17.7 MiB/s | 198.9 KiB | 00m00s [ 70/163] Installing systemd-libs-0:257 100% | 371.2 MiB/s | 2.2 MiB | 00m00s [ 71/163] Installing libsepol-0:3.8-1.f 100% | 428.9 MiB/s | 878.3 KiB | 00m00s [ 72/163] Installing pcre2-0:10.45-1.fc 100% | 336.7 MiB/s | 689.5 KiB | 00m00s [ 73/163] Installing libselinux-0:3.8-1 100% | 208.6 MiB/s | 213.6 KiB | 00m00s [ 74/163] Installing grep-0:3.12-1.fc43 100% | 71.6 MiB/s | 1.0 MiB | 00m00s [ 75/163] Installing findutils-1:4.10.0 100% | 117.7 MiB/s | 1.9 MiB | 00m00s [ 76/163] Installing sed-0:4.9-4.fc42.i 100% | 60.6 MiB/s | 868.6 KiB | 00m00s [ 77/163] Installing xz-1:5.8.1-1.fc43. 100% | 88.9 MiB/s | 1.3 MiB | 00m00s [ 78/163] Installing libmount-0:2.40.4- 100% | 379.4 MiB/s | 388.5 KiB | 00m00s [ 79/163] Installing lz4-libs-0:1.10.0- 100% | 154.0 MiB/s | 157.7 KiB | 00m00s [ 80/163] Installing alternatives-0:1.3 100% | 5.6 MiB/s | 62.9 KiB | 00m00s [ 81/163] Installing lua-libs-0:5.4.7-3 100% | 302.3 MiB/s | 309.5 KiB | 00m00s [ 82/163] Installing sqlite-libs-0:3.49 100% | 397.8 MiB/s | 1.6 MiB | 00m00s [ 83/163] Installing json-c-0:0.18-2.fc 100% | 0.0 B/s | 91.2 KiB | 00m00s [ 84/163] Installing libffi-0:3.4.7-4.f 100% | 77.3 MiB/s | 79.1 KiB | 00m00s [ 85/163] Installing p11-kit-0:0.25.5-5 100% | 129.6 MiB/s | 2.3 MiB | 00m00s [ 86/163] Installing p11-kit-trust-0:0. 100% | 19.5 MiB/s | 359.3 KiB | 00m00s [ 87/163] Installing openssl-libs-1:3.5 100% | 362.9 MiB/s | 7.3 MiB | 00m00s [ 88/163] Installing coreutils-0:9.7-1. 100% | 172.0 MiB/s | 5.3 MiB | 00m00s [ 89/163] Installing ca-certificates-0: 100% | 1.6 MiB/s | 2.4 MiB | 00m01s [ 90/163] Installing gzip-0:1.13-3.fc42 100% | 29.6 MiB/s | 393.4 KiB | 00m00s [ 91/163] Installing rpm-sequoia-0:1.8. 100% | 347.1 MiB/s | 2.8 MiB | 00m00s [ 92/163] Installing libfsverity-0:1.6- 100% | 0.0 B/s | 28.8 KiB | 00m00s [ 93/163] Installing libevent-0:2.1.12- 100% | 313.5 MiB/s | 963.0 KiB | 00m00s [ 94/163] Installing zstd-0:1.5.7-1.fc4 100% | 110.7 MiB/s | 1.7 MiB | 00m00s [ 95/163] Installing util-linux-core-0: 100% | 78.9 MiB/s | 1.3 MiB | 00m00s [ 96/163] Installing tar-2:1.35-5.fc42. 100% | 157.9 MiB/s | 3.0 MiB | 00m00s [ 97/163] Installing libsemanage-0:3.8- 100% | 314.1 MiB/s | 321.7 KiB | 00m00s [ 98/163] Installing systemd-standalone 100% | 22.2 MiB/s | 273.0 KiB | 00m00s [ 99/163] Installing rpm-libs-0:5.99.90 100% | 309.3 MiB/s | 950.3 KiB | 00m00s [100/163] Installing libusb1-0:1.0.28-2 100% | 22.0 MiB/s | 180.0 KiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-7.fc43.i686 >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-7.fc43.i686 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [101/163] Installing tpm2-tss-0:4.1.3-7 100% | 270.4 MiB/s | 1.6 MiB | 00m00s [102/163] Installing ima-evm-utils-libs 100% | 0.0 B/s | 53.2 KiB | 00m00s [103/163] Installing zip-0:3.0-43.fc42. 100% | 52.5 MiB/s | 698.2 KiB | 00m00s [104/163] Installing libpsl-0:0.21.5-5. 100% | 0.0 B/s | 76.8 KiB | 00m00s [105/163] Installing libassuan-0:2.5.7- 100% | 164.9 MiB/s | 168.8 KiB | 00m00s [106/163] Installing libgcrypt-0:1.11.0 100% | 310.8 MiB/s | 1.2 MiB | 00m00s [107/163] Installing libksba-0:1.6.7-3. 100% | 395.0 MiB/s | 404.4 KiB | 00m00s [108/163] Installing libfdisk-0:2.40.4- 100% | 411.0 MiB/s | 420.9 KiB | 00m00s [109/163] Installing nettle-0:3.10.1-1. 100% | 253.8 MiB/s | 779.8 KiB | 00m00s [110/163] Installing gnutls-0:3.8.9-5.f 100% | 358.1 MiB/s | 3.6 MiB | 00m00s [111/163] Installing libxml2-0:2.12.10- 100% | 112.7 MiB/s | 1.8 MiB | 00m00s [112/163] Installing libarchive-0:3.7.7 100% | 326.9 MiB/s | 1.0 MiB | 00m00s [113/163] Installing bzip2-0:1.0.8-20.f 100% | 7.7 MiB/s | 94.1 KiB | 00m00s [114/163] Installing add-determinism-0: 100% | 147.1 MiB/s | 2.4 MiB | 00m00s [115/163] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [116/163] Installing cpio-0:2.15-2.fc41 100% | 73.7 MiB/s | 1.1 MiB | 00m00s [117/163] Installing diffutils-0:3.12-1 100% | 97.4 MiB/s | 1.6 MiB | 00m00s [118/163] Installing libpkgconf-0:2.3.0 100% | 0.0 B/s | 77.7 KiB | 00m00s [119/163] Installing pkgconf-0:2.3.0-2. 100% | 7.6 MiB/s | 85.4 KiB | 00m00s [120/163] Installing pkgconf-pkg-config 100% | 176.6 KiB/s | 1.8 KiB | 00m00s [121/163] Installing ed-0:1.21-2.fc42.i 100% | 13.1 MiB/s | 147.6 KiB | 00m00s [122/163] Installing patch-0:2.8-1.fc43 100% | 19.1 MiB/s | 235.3 KiB | 00m00s [123/163] Installing jansson-0:2.14-2.f 100% | 91.4 MiB/s | 93.6 KiB | 00m00s [124/163] Installing libgomp-0:15.1.1-1 100% | 263.1 MiB/s | 538.9 KiB | 00m00s [125/163] Installing npth-0:1.8-2.fc42. 100% | 0.0 B/s | 50.0 KiB | 00m00s [126/163] Installing libtool-ltdl-0:2.5 100% | 0.0 B/s | 70.5 KiB | 00m00s [127/163] Installing gdbm-libs-1:1.23-9 100% | 127.0 MiB/s | 130.1 KiB | 00m00s [128/163] Installing cyrus-sasl-lib-0:2 100% | 145.3 MiB/s | 2.5 MiB | 00m00s [129/163] Installing openldap-0:2.6.9-5 100% | 220.1 MiB/s | 676.1 KiB | 00m00s [130/163] Installing gnupg2-0:2.4.7-3.f 100% | 255.4 MiB/s | 10.0 MiB | 00m00s [131/163] Installing rpm-sign-libs-0:5. 100% | 31.0 MiB/s | 31.7 KiB | 00m00s [132/163] Installing rpm-build-libs-0:5 100% | 257.7 MiB/s | 263.9 KiB | 00m00s [133/163] Installing xxhash-libs-0:0.8. 100% | 112.2 MiB/s | 114.9 KiB | 00m00s [134/163] Installing libbrotli-0:1.1.0- 100% | 281.7 MiB/s | 865.4 KiB | 00m00s [135/163] Installing libnghttp2-0:1.65. 100% | 158.8 MiB/s | 162.6 KiB | 00m00s [136/163] Installing keyutils-libs-0:1. 100% | 0.0 B/s | 58.9 KiB | 00m00s [137/163] Installing libcom_err-0:1.47. 100% | 0.0 B/s | 63.4 KiB | 00m00s [138/163] Installing libverto-0:0.3.2-1 100% | 0.0 B/s | 26.5 KiB | 00m00s [139/163] Installing krb5-libs-0:1.21.3 100% | 331.5 MiB/s | 2.3 MiB | 00m00s [140/163] Installing libssh-0:0.11.1-4. 100% | 297.6 MiB/s | 609.5 KiB | 00m00s [141/163] Installing libcurl-0:8.14.0~r 100% | 300.3 MiB/s | 922.4 KiB | 00m00s [142/163] Installing elfutils-debuginfo 100% | 6.9 MiB/s | 84.5 KiB | 00m00s [143/163] Installing binutils-0:2.44-3. 100% | 337.6 MiB/s | 26.0 MiB | 00m00s [144/163] Installing elfutils-0:0.192-8 100% | 147.5 MiB/s | 2.7 MiB | 00m00s [145/163] Installing gdb-minimal-0:16.3 100% | 300.8 MiB/s | 13.8 MiB | 00m00s [146/163] Installing debugedit-0:5.1-6. 100% | 16.7 MiB/s | 205.0 KiB | 00m00s [147/163] Installing curl-0:8.14.0~rc1- 100% | 23.6 MiB/s | 483.2 KiB | 00m00s [148/163] Installing rpm-0:5.99.90-4.fc 100% | 80.3 MiB/s | 2.5 MiB | 00m00s [149/163] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.1 KiB | 00m00s [150/163] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [151/163] Installing tree-sitter-srpm-m 100% | 0.0 B/s | 8.6 KiB | 00m00s [152/163] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [153/163] Installing rpm-build-0:5.99.9 100% | 22.0 MiB/s | 270.3 KiB | 00m00s [154/163] Installing pyproject-srpm-mac 100% | 0.0 B/s | 2.5 KiB | 00m00s [155/163] Installing redhat-rpm-config- 100% | 93.9 MiB/s | 192.3 KiB | 00m00s [156/163] Installing forge-srpm-macros- 100% | 0.0 B/s | 40.3 KiB | 00m00s [157/163] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s [158/163] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 62.0 KiB | 00m00s [159/163] Installing python-srpm-macros 100% | 51.8 MiB/s | 53.0 KiB | 00m00s [160/163] Installing util-linux-0:2.40. 100% | 95.4 MiB/s | 3.2 MiB | 00m00s [161/163] Installing shadow-utils-2:4.1 100% | 143.0 MiB/s | 4.0 MiB | 00m00s [162/163] Installing which-0:2.23-1.fc4 100% | 7.1 MiB/s | 80.2 KiB | 00m00s [163/163] Installing info-0:7.2-3.fc42. 100% | 194.1 KiB/s | 360.8 KiB | 00m02s Warning: skipped OpenPGP checks for 161 packages from repository: http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.6.0-1.fc43.i686 alternatives-1.32-1.fc43.i686 ansible-srpm-macros-1-17.1.fc42.noarch audit-libs-4.0.3-2.fc42.i686 bash-5.2.37-3.fc43.i686 binutils-2.44-3.fc43.i686 build-reproducibility-srpm-macros-0.6.0-1.fc43.noarch bzip2-1.0.8-20.fc42.i686 bzip2-libs-1.0.8-20.fc42.i686 ca-certificates-2024.2.69_v8.0.401-5.fc42.noarch coreutils-9.7-1.fc43.i686 coreutils-common-9.7-1.fc43.i686 cpio-2.15-2.fc41.i686 crypto-policies-20250402-2.git86c0178.fc43.noarch curl-8.14.0~rc1-1.fc43.i686 cyrus-sasl-lib-2.1.28-30.fc42.i686 debugedit-5.1-6.fc43.i686 diffutils-3.12-1.fc43.i686 dwz-0.15-9.fc42.i686 ed-1.21-2.fc42.i686 efi-srpm-macros-6-3.fc43.noarch elfutils-0.192-8.fc42.i686 elfutils-debuginfod-client-0.192-8.fc42.i686 elfutils-default-yama-scope-0.192-8.fc42.noarch elfutils-libelf-0.192-8.fc42.i686 elfutils-libs-0.192-8.fc42.i686 fedora-gpg-keys-43-0.2.noarch fedora-release-43-0.15.noarch fedora-release-common-43-0.15.noarch fedora-release-identity-basic-43-0.15.noarch fedora-repos-43-0.2.noarch fedora-repos-rawhide-43-0.2.noarch file-5.46-1.fc42.i686 file-libs-5.46-1.fc42.i686 filesystem-3.18-40.fc43.i686 filesystem-srpm-macros-3.18-40.fc43.noarch findutils-4.10.0-5.fc42.i686 fonts-srpm-macros-2.0.5-21.fc42.noarch forge-srpm-macros-0.4.0-2.fc42.noarch fpc-srpm-macros-1.3-14.fc42.noarch gawk-5.3.2-1.fc43.i686 gdb-minimal-16.3-1.fc43.i686 gdbm-libs-1.23-9.fc42.i686 ghc-srpm-macros-1.9.2-2.fc42.noarch glibc-2.41.9000-12.fc43.i686 glibc-common-2.41.9000-12.fc43.i686 glibc-gconv-extra-2.41.9000-12.fc43.i686 glibc-minimal-langpack-2.41.9000-12.fc43.i686 gmp-6.3.0-3.fc43.i686 gnat-srpm-macros-6-7.fc42.noarch gnupg2-2.4.7-3.fc43.i686 gnutls-3.8.9-5.fc43.i686 go-srpm-macros-3.6.0-7.fc43.noarch grep-3.12-1.fc43.i686 gzip-1.13-3.fc42.i686 ima-evm-utils-libs-1.6.2-5.fc43.i686 info-7.2-3.fc42.i686 jansson-2.14-2.fc42.i686 json-c-0.18-2.fc42.i686 kernel-srpm-macros-1.0-25.fc42.noarch keyutils-libs-1.6.3-5.fc42.i686 krb5-libs-1.21.3-5.fc42.i686 libacl-2.3.2-3.fc42.i686 libarchive-3.7.7-4.fc43.i686 libassuan-2.5.7-3.fc42.i686 libattr-2.5.2-5.fc42.i686 libblkid-2.40.4-7.fc43.i686 libbrotli-1.1.0-6.fc42.i686 libcap-2.76-1.fc43.i686 libcap-ng-0.8.5-4.fc42.i686 libcom_err-1.47.2-3.fc42.i686 libcurl-8.14.0~rc1-1.fc43.i686 libeconf-0.7.6-1.fc43.i686 libevent-2.1.12-15.fc42.i686 libfdisk-2.40.4-7.fc43.i686 libffi-3.4.7-4.fc43.i686 libfsverity-1.6-2.fc42.i686 libgcc-15.1.1-1.fc43.i686 libgcrypt-1.11.0-5.fc42.i686 libgomp-15.1.1-1.fc43.i686 libgpg-error-1.55-1.fc43.i686 libidn2-2.3.8-1.fc43.i686 libksba-1.6.7-3.fc42.i686 libmount-2.40.4-7.fc43.i686 libnghttp2-1.65.0-1.fc43.i686 libpkgconf-2.3.0-2.fc42.i686 libpsl-0.21.5-5.fc42.i686 libselinux-3.8-1.fc42.i686 libsemanage-3.8-1.fc42.i686 libsepol-3.8-1.fc42.i686 libsmartcols-2.40.4-7.fc43.i686 libssh-0.11.1-4.fc42.i686 libssh-config-0.11.1-4.fc42.noarch libstdc++-15.1.1-1.fc43.i686 libtasn1-4.20.0-1.fc43.i686 libtool-ltdl-2.5.4-4.fc42.i686 libunistring-1.1-9.fc42.i686 libusb1-1.0.28-2.fc43.i686 libuuid-2.40.4-7.fc43.i686 libverto-0.3.2-10.fc42.i686 libxcrypt-4.4.38-7.fc43.i686 libxml2-2.12.10-1.fc43.i686 libzstd-1.5.7-1.fc43.i686 lua-libs-5.4.7-3.fc43.i686 lua-srpm-macros-1-15.fc42.noarch lz4-libs-1.10.0-2.fc42.i686 mpfr-4.2.2-1.fc43.i686 ncurses-base-6.5-5.20250125.fc42.noarch ncurses-libs-6.5-5.20250125.fc42.i686 nettle-3.10.1-1.fc43.i686 npth-1.8-2.fc42.i686 ocaml-srpm-macros-10-4.fc42.noarch openblas-srpm-macros-2-19.fc42.noarch openldap-2.6.9-5.fc43.i686 openssl-libs-3.5.0-3.fc43.i686 p11-kit-0.25.5-5.fc42.i686 p11-kit-trust-0.25.5-5.fc42.i686 package-notes-srpm-macros-0.5-13.fc42.noarch pam-libs-1.7.0-4.fc42.i686 patch-2.8-1.fc43.i686 pcre2-10.45-1.fc43.i686 pcre2-syntax-10.45-1.fc43.noarch perl-srpm-macros-1-57.fc42.noarch pkgconf-2.3.0-2.fc42.i686 pkgconf-m4-2.3.0-2.fc42.noarch pkgconf-pkg-config-2.3.0-2.fc42.i686 popt-1.19-8.fc42.i686 publicsuffix-list-dafsa-20250116-1.fc42.noarch pyproject-srpm-macros-1.18.1-1.fc43.noarch python-srpm-macros-3.13-5.fc43.noarch qt5-srpm-macros-5.15.16-1.fc43.noarch qt6-srpm-macros-6.9.0-2.fc43.noarch readline-8.2-13.fc43.i686 redhat-rpm-config-343-4.fc43.noarch rpm-5.99.90-4.fc43.i686 rpm-build-5.99.90-4.fc43.i686 rpm-build-libs-5.99.90-4.fc43.i686 rpm-libs-5.99.90-4.fc43.i686 rpm-sequoia-1.8.0-1.fc43.i686 rpm-sign-libs-5.99.90-4.fc43.i686 rust-srpm-macros-26.3-4.fc42.noarch sed-4.9-4.fc42.i686 setup-2.15.0-23.fc43.noarch shadow-utils-4.17.4-1.fc43.i686 sqlite-libs-3.49.0-1.fc43.i686 systemd-libs-257.5-2.fc43.i686 systemd-standalone-sysusers-257.5-2.fc43.i686 tar-1.35-5.fc42.i686 tpm2-tss-4.1.3-7.fc43.i686 tree-sitter-srpm-macros-0.2.4-1.fc43.noarch unzip-6.0-66.fc42.i686 util-linux-2.40.4-7.fc43.i686 util-linux-core-2.40.4-7.fc43.i686 which-2.23-1.fc42.i686 xxhash-libs-0.8.3-2.fc42.i686 xz-5.8.1-1.fc43.i686 xz-libs-5.8.1-1.fc43.i686 zig-srpm-macros-1-4.fc42.noarch zip-3.0-43.fc42.i686 zlib-ng-compat-2.2.4-2.fc43.i686 zstd-1.5.7-1.fc43.i686 Start: buildsrpm Start: rpmbuild -bs Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1746144000 Wrote: /builddir/build/SRPMS/avogadro2-libs-1.99.0-5.fc43.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-i686-1746264360.351363/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-bfqokyuh/avogadro2-libs/avogadro2-libs.spec) Config(child) 0 minutes 20 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/avogadro2-libs-1.99.0-5.fc43.src.rpm) Config(fedora-rawhide-i686) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1746264360.351363/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1746264360.351363/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1746264360.351363/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-5.99.90-4.fc43.x86_64 rpm-sequoia-1.8.0-1.fc43.x86_64 dnf5-5.2.13.1-1.fc43.x86_64 dnf5-plugins-5.2.13.1-1.fc43.x86_64 Finish: chroot init Start: build phase for avogadro2-libs-1.99.0-5.fc43.src.rpm Start: build setup for avogadro2-libs-1.99.0-5.fc43.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1746144000 Wrote: /builddir/build/SRPMS/avogadro2-libs-1.99.0-5.fc43.src.rpm Updating and loading repositories: local 100% | 129.4 KiB/s | 3.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 147.2 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 102.4 KiB/s | 1.5 KiB | 00m00s Repositories loaded. 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575.7 KiB vulkan-loader-devel i686 1.4.309.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.0 KiB web-assets-filesystem noarch 5-23.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 34.0 B xapian-core-libs i686 1.4.27-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB xcb-util i686 0.4.1-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 25.5 KiB xcb-util-image i686 0.4.1-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21.4 KiB xcb-util-keysyms i686 0.4.1-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.9 KiB xcb-util-renderutil i686 0.3.10-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 23.6 KiB xcb-util-wm i686 0.4.2-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 87.7 KiB xkeyboard-config noarch 2.44-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.6 MiB xml-common noarch 0.6.3-66.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.4 KiB xorg-x11-proto-devel noarch 2024.1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB zlib-ng-compat-devel i686 2.2.4-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 107.0 KiB Transaction Summary: Installing: 331 packages Total size of inbound packages is 370 MiB. Need to download 370 MiB. After this operation, 1 GiB extra will be used (install 1 GiB, remove 0 B). [ 1/331] chrpath-0:0.16-25.fc42.i686 100% | 1.1 MiB/s | 29.8 KiB | 00m00s [ 2/331] boost-devel-0:1.83.0-12.fc42. 100% | 165.3 MiB/s | 11.7 MiB | 00m00s [ 3/331] doxygen-2:1.13.2-5.fc43.i686 100% | 105.2 MiB/s | 5.4 MiB | 00m00s [ 4/331] gcc-c++-0:15.1.1-1.fc43.i686 100% | 167.9 MiB/s | 15.3 MiB | 00m00s [ 5/331] cmake-0:3.31.6-2.fc43.i686 100% | 72.4 MiB/s | 13.3 MiB | 00m00s [ 6/331] hdf5-devel-0:1.14.6-3.fc43.i6 100% | 100.6 MiB/s | 1.4 MiB | 00m00s [ 7/331] graphviz-0:12.2.1-8.fc43.i686 100% | 131.0 MiB/s | 4.8 MiB | 00m00s [ 8/331] jsoncpp-devel-0:1.9.6-1.fc43. 100% | 3.2 MiB/s | 29.5 KiB | 00m00s [ 9/331] libarchive-devel-0:3.7.7-4.fc 100% | 20.6 MiB/s | 126.6 KiB | 00m00s [ 10/331] make-1:4.4.1-10.fc42.i686 100% | 41.0 MiB/s | 587.9 KiB | 00m00s [ 11/331] mesa-libGLU-devel-0:9.0.3-6.f 100% | 1.5 MiB/s | 12.1 KiB | 00m00s [ 12/331] mmtf-cpp-devel-0:1.1.0-7.fc42 100% | 7.4 MiB/s | 30.4 KiB | 00m00s [ 13/331] eigen3-devel-0:3.4.0-17.fc42. 100% | 121.6 MiB/s | 1.1 MiB | 00m00s [ 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00m00s [ 27/331] qt5-designer-0:5.15.16-4.fc43 100% | 21.8 MiB/s | 178.7 KiB | 00m00s [ 28/331] qt5-doctools-0:5.15.16-4.fc43 100% | 81.5 MiB/s | 751.5 KiB | 00m00s [ 29/331] qt5-linguist-0:5.15.16-4.fc43 100% | 101.4 MiB/s | 934.1 KiB | 00m00s [ 30/331] qt5-qttools-0:5.15.16-4.fc43. 100% | 8.4 MiB/s | 43.0 KiB | 00m00s [ 31/331] qt5-qtbase-0:5.15.16-2.fc42.i 100% | 183.9 MiB/s | 3.9 MiB | 00m00s [ 32/331] qt5-qttools-libs-designer-0:5 100% | 148.0 MiB/s | 2.8 MiB | 00m00s [ 33/331] qt5-qttools-libs-designercomp 100% | 60.7 MiB/s | 870.8 KiB | 00m00s [ 34/331] qt5-qttools-libs-help-0:5.15. 100% | 34.2 MiB/s | 175.1 KiB | 00m00s [ 35/331] qt5-qttools-common-0:5.15.16- 100% | 3.6 MiB/s | 11.1 KiB | 00m00s [ 36/331] qt5-qtsvg-0:5.15.16-2.fc42.i6 100% | 39.5 MiB/s | 202.3 KiB | 00m00s [ 37/331] cups-libs-1:2.4.12-2.fc43.i68 100% | 55.7 MiB/s | 285.1 KiB | 00m00s [ 38/331] fontconfig-0:2.16.2-1.fc43.i6 100% | 43.2 MiB/s | 265.2 KiB | 00m00s [ 39/331] freetype-0:2.13.3-2.fc42.i686 100% | 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pcre2-utf16-0:10.45-1.fc43.i6 100% | 32.9 MiB/s | 236.0 KiB | 00m00s [ 79/331] qt-settings-0:42.0-3.fc43.noa 100% | 3.5 MiB/s | 10.6 KiB | 00m00s [ 80/331] qt5-filesystem-0:5.15.16-1.fc 100% | 2.3 MiB/s | 9.3 KiB | 00m00s [ 81/331] qt5-qtbase-common-0:5.15.16-2 100% | 2.9 MiB/s | 12.0 KiB | 00m00s [ 82/331] qt5-qtdeclarative-0:5.15.16-2 100% | 138.9 MiB/s | 4.7 MiB | 00m00s [ 83/331] libicu-0:76.1-4.fc42.i686 100% | 182.1 MiB/s | 10.9 MiB | 00m00s [ 84/331] perl-Carp-0:1.54-512.fc42.noa 100% | 7.0 MiB/s | 28.9 KiB | 00m00s [ 85/331] perl-DynaLoader-0:1.56-517.fc 100% | 5.1 MiB/s | 26.2 KiB | 00m00s [ 86/331] perl-Encode-4:3.21-512.fc42.i 100% | 60.9 MiB/s | 1.0 MiB | 00m00s [ 87/331] perl-Exporter-0:5.78-512.fc42 100% | 6.1 MiB/s | 31.0 KiB | 00m00s [ 88/331] python3-libs-0:3.13.3-2.fc43. 100% | 157.3 MiB/s | 9.0 MiB | 00m00s [ 89/331] perl-Errno-0:1.38-517.fc43.i6 100% | 1.1 MiB/s | 15.1 KiB | 00m00s [ 90/331] perl-Scalar-List-Utils-5:1.69 100% | 15.0 MiB/s | 77.0 KiB | 00m00s [ 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copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Complete! Finish: build setup for avogadro2-libs-1.99.0-5.fc43.src.rpm Start: rpmbuild avogadro2-libs-1.99.0-5.fc43.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1746144000 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.CcUhI0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.7NKaWz + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + rm -rf avogadrolibs-1.99.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/avogadrolibs-1.99.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd avogadrolibs-1.99.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/avogadro2-libs-1.99.0-Fix_typo.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/avogadro2-libs-1.98.1-use_upstream_cmake_config.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + tar -xf /builddir/build/SOURCES/avogenerators-1.98.0.tar.gz + mv avogenerators-1.98.0 avogadrogenerators + tar -xf /builddir/build/SOURCES/molecules-1.98.0.tar.gz + mv molecules-1.98.0 molecules + tar -xf /builddir/build/SOURCES/crystals-1.98.0.tar.gz + mv crystals-1.98.0 crystals + tar -xf /builddir/build/SOURCES/fragments-1.99.0.tar.gz + mv fragments-1.99.0 fragments + mv molecules/LICENSE molecules/LICENSE-molecules + mv fragments/LICENSE fragments/LICENSE-fragments + mv avogadrogenerators/README.md avogadrogenerators/README-avogenerators.md + sed -e 's|${AvogadroLibs_SOURCE_DIR}/../|${AvogadroLibs_SOURCE_DIR}/|g' -i avogadro/qtplugins/insertfragment/CMakeLists.txt + sed -e 's|${AvogadroLibs_SOURCE_DIR}/../|${AvogadroLibs_SOURCE_DIR}/|g' -i avogadro/qtplugins/quantuminput/CMakeLists.txt + sed -e 's|${AvogadroLibs_SOURCE_DIR}/../|${AvogadroLibs_SOURCE_DIR}/|g' -i avogadro/qtplugins/templatetool/CMakeLists.txt + mv thirdparty/libgwavi/README.md thirdparty/libgwavi/README-libgwavi.md + mv fragments/README.md fragments/README-fragments.md + RPM_EC=0 ++ jobs -p + exit 0 Executing(%conf): /bin/sh -e /var/tmp/rpm-tmp.JVak67 + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd avogadrolibs-1.99.0 + export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_BUILD_TYPE:STRING=Release -DINSTALL_INCLUDE_DIR:PATH=include/avogadro2 -DINSTALL_LIBRARY_DIR:PATH=lib -Wno-dev -DENABLE_GLSL:BOOL=ON -DUSE_PYTHON:BOOL=OFF -DUSE_LIBARCHIVE:BOOL=ON -DENABLE_RPATH:BOOL=OFF -DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON -DENABLE_TESTING:BOOL=OFF -DUSE_MMTF:BOOL=ON -DUSE_QT:BOOL=ON -DUSE_MOLEQUEUE:BOOL=ON -DUSE_VTK:BOOL=OFF -DUSE_HDF5:BOOL=ON -DUSE_SPGLIB:BOOL=ON -DBUILD_GPL_PLUGINS:BOOL=ON -DBUILD_STATIC_PLUGINS:BOOL=ON -DBUILD_DOCUMENTATION:BOOL=ON -DUSE_LIBMSYM:BOOL=OFF -DOpenBabel3_INCLUDE_DIR:PATH=/usr/include/openbabel3 -- The C compiler identification is GNU 15.1.1 -- The CXX compiler identification is GNU 15.1.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Could not use git to determine source version, using version 1.99.0 -- Component omp of Spglib: NOT FOUND -- Component fortran of Spglib: NOT FOUND -- Found package: Spglib -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Found HDF5: /usr/lib/libhdf5.so (found version "1.14.6") found components: C -- Found MMTF: /usr/include -- Found OpenGL: /usr/lib/libOpenGL.so -- Found GLEW: /usr/include (found version "2.2.0") -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13.3", minimum required is "3") -- Found OpenBabel3: /usr/include/openbabel3 We have dalton.py;gamessuk.py;gaussian.py;molpro.py;mopac.py;nwchem.py;orca.py;psi4.py;pyscf.py;qchem.py;terachem.py We have /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/dalton.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/gamessuk.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/gaussian.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/molpro.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/mopac.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/nwchem.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/orca.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/psi4.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/pyscf.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/qchem.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/terachem.py -- Found LibArchive: /usr/lib/libarchive.so (found version "3.7.7") -- Found Doxygen: /usr/bin/doxygen (found version "1.13.2") found components: doxygen dot -- Configuring done (1.6s) -- Generating done (0.4s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP ENABLE_GLSL INCLUDE_INSTALL_DIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR USE_MOLEQUEUE -- Build files have been written to: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.UFpuDL + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd avogadrolibs-1.99.0 + /usr/bin/cmake --build redhat-linux-build -j4 --verbose Change Dir: '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4 /usr/bin/cmake -S/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -B/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f thirdparty/CMakeFiles/pugixml.dir/build.make thirdparty/CMakeFiles/pugixml.dir/depend /usr/bin/gmake -f thirdparty/CMakeFiles/struct.dir/build.make thirdparty/CMakeFiles/struct.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/thirdparty /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/thirdparty/CMakeFiles/pugixml.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/thirdparty /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/thirdparty/CMakeFiles/struct.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f thirdparty/libgwavi/CMakeFiles/gwavi.dir/build.make thirdparty/libgwavi/CMakeFiles/gwavi.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/thirdparty/libgwavi /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/thirdparty/libgwavi/CMakeFiles/gwavi.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f avogadro/core/CMakeFiles/Headers.dir/build.make avogadro/core/CMakeFiles/Headers.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core/CMakeFiles/Headers.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f thirdparty/CMakeFiles/pugixml.dir/build.make thirdparty/CMakeFiles/pugixml.dir/build /usr/bin/gmake -f thirdparty/CMakeFiles/struct.dir/build.make thirdparty/CMakeFiles/struct.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f thirdparty/libgwavi/CMakeFiles/gwavi.dir/build.make thirdparty/libgwavi/CMakeFiles/gwavi.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/core/CMakeFiles/Headers.dir/build.make avogadro/core/CMakeFiles/Headers.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/core/CMakeFiles/Headers.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 0%] Building CXX object thirdparty/CMakeFiles/pugixml.dir/pugixml/pugixml.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/thirdparty && /usr/bin/g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT thirdparty/CMakeFiles/pugixml.dir/pugixml/pugixml.cpp.o -MF CMakeFiles/pugixml.dir/pugixml/pugixml.cpp.o.d -o CMakeFiles/pugixml.dir/pugixml/pugixml.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml/pugixml.cpp [ 1%] Building C object thirdparty/libgwavi/CMakeFiles/gwavi.dir/gwavi.c.o [ 1%] Building C object thirdparty/CMakeFiles/struct.dir/struct/struct.c.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/thirdparty/libgwavi && /usr/bin/gcc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -MD -MT thirdparty/libgwavi/CMakeFiles/gwavi.dir/gwavi.c.o -MF CMakeFiles/gwavi.dir/gwavi.c.o.d -o CMakeFiles/gwavi.dir/gwavi.c.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi/gwavi.c cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/thirdparty && /usr/bin/gcc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -MD -MT thirdparty/CMakeFiles/struct.dir/struct/struct.c.o -MF CMakeFiles/struct.dir/struct/struct.c.o.d -o CMakeFiles/struct.dir/struct/struct.c.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct/struct.c [ 1%] Built target Headers [ 1%] Building C object thirdparty/libgwavi/CMakeFiles/gwavi.dir/fileio.c.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/thirdparty/libgwavi && /usr/bin/gcc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -MD -MT thirdparty/libgwavi/CMakeFiles/gwavi.dir/fileio.c.o -MF CMakeFiles/gwavi.dir/fileio.c.o.d -o CMakeFiles/gwavi.dir/fileio.c.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi/fileio.c [ 1%] Building C object thirdparty/CMakeFiles/struct.dir/struct/struct_endian.c.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/thirdparty && /usr/bin/gcc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -MD -MT thirdparty/CMakeFiles/struct.dir/struct/struct_endian.c.o -MF CMakeFiles/struct.dir/struct/struct_endian.c.o.d -o CMakeFiles/struct.dir/struct/struct_endian.c.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct/struct_endian.c /usr/bin/gmake -f utilities/encodefile/CMakeFiles/encodefile.dir/build.make utilities/encodefile/CMakeFiles/encodefile.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/utilities/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/utilities/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/utilities/encodefile/CMakeFiles/encodefile.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f utilities/encodefile/CMakeFiles/encodefile.dir/build.make utilities/encodefile/CMakeFiles/encodefile.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 1%] Building CXX object utilities/encodefile/CMakeFiles/encodefile.dir/encodefile.cxx.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/utilities/encodefile && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT utilities/encodefile/CMakeFiles/encodefile.dir/encodefile.cxx.o -MF CMakeFiles/encodefile.dir/encodefile.cxx.o.d -o CMakeFiles/encodefile.dir/encodefile.cxx.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/utilities/encodefile/encodefile.cxx [ 1%] Building C object thirdparty/libgwavi/CMakeFiles/gwavi.dir/avi-utils.c.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/thirdparty/libgwavi && /usr/bin/gcc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -MD -MT thirdparty/libgwavi/CMakeFiles/gwavi.dir/avi-utils.c.o -MF CMakeFiles/gwavi.dir/avi-utils.c.o.d -o CMakeFiles/gwavi.dir/avi-utils.c.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi/avi-utils.c [ 1%] Linking C static library libgwavi.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/thirdparty/libgwavi && /usr/bin/cmake -P CMakeFiles/gwavi.dir/cmake_clean_target.cmake cd 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utilities/resdata/CMakeFiles/resdataparse.dir/build.make utilities/resdata/CMakeFiles/resdataparse.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/ar qc libstruct.a CMakeFiles/struct.dir/struct/struct.c.o CMakeFiles/struct.dir/struct/struct_endian.c.o /usr/bin/ranlib libstruct.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 2%] Building CXX object utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/utilities/resdata && /usr/bin/g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o -MF CMakeFiles/resdataparse.dir/resdataparse.cxx.o.d -o CMakeFiles/resdataparse.dir/resdataparse.cxx.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/utilities/resdata/resdataparse.cxx [ 2%] Built target struct /usr/bin/gmake -f avogadro/core/CMakeFiles/Core.dir/build.make avogadro/core/CMakeFiles/Core.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core/CMakeFiles/Core.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/core/CMakeFiles/Core.dir/build.make avogadro/core/CMakeFiles/Core.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 2%] Building CXX object avogadro/core/CMakeFiles/Core.dir/angleiterator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/angleiterator.cpp.o -MF CMakeFiles/Core.dir/angleiterator.cpp.o.d -o CMakeFiles/Core.dir/angleiterator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.cpp [ 2%] Linking CXX executable ../../bin/encodefile cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/utilities/encodefile && /usr/bin/cmake -E cmake_link_script CMakeFiles/encodefile.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 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-DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/resdataparse.dir/link.d CMakeFiles/resdataparse.dir/resdataparse.cxx.o -o ../../bin/resdataparse gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 3%] Built target resdataparse [ 3%] Building CXX object avogadro/core/CMakeFiles/Core.dir/coordinateblockgenerator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro 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avogadro/core/CMakeFiles/Core.dir/coordinateblockgenerator.cpp.o -MF CMakeFiles/Core.dir/coordinateblockgenerator.cpp.o.d -o CMakeFiles/Core.dir/coordinateblockgenerator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp [ 3%] Building CXX object avogadro/core/CMakeFiles/Core.dir/crystaltools.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/crystaltools.cpp.o -MF CMakeFiles/Core.dir/crystaltools.cpp.o.d -o CMakeFiles/Core.dir/crystaltools.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.cpp [ 3%] Building CXX object avogadro/core/CMakeFiles/Core.dir/cube.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/cube.cpp.o -MF CMakeFiles/Core.dir/cube.cpp.o.d -o CMakeFiles/Core.dir/cube.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.cpp In file included from /usr/include/eigen3/Eigen/Core:257, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:8: In member function ‘Eigen::internal::mul_assign_op::assignCoeff(double&, double const&) const’, inlined from ‘Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeff(int, int)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:654:26, inlined from ‘Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeffByOuterInner(int, int)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘Eigen::internal::copy_using_evaluator_DefaultTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 2, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:211:35, inlined from ‘Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 3, 2>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:456:92, inlined from ‘Eigen::internal::call_dense_assignment_loop, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘Eigen::internal::Assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘Eigen::internal::call_assignment_no_alias, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘Eigen::internal::call_assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:858:27, inlined from ‘Eigen::DenseBase >::operator*=(double const&)’ at /usr/include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h:20:28, inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:113:18: /usr/include/eigen3/Eigen/src/Core/functors/AssignmentFunctors.h:92:102: warning: ‘MEM[(double &)&pos3d + 16]’ may be used uninitialized [-Wmaybe-uninitialized] 92 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void assignCoeff(DstScalar& a, const SrcScalar& b) const { a *= b; } | ~~^~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:70:11: note: ‘MEM[(double &)&pos3d + 16]’ was declared here 70 | Vector3 pos3d; | ^~~~~ In file included from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/istream:43, from /usr/include/c++/15/sstream:42, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:11, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:6: In member function ‘std::basic_ostream >::operator<<(double)’, inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:173:76: /usr/include/c++/15/bits/ostream.h:232:25: warning: ‘MEM[(Scalar &)&fpos3d]’ may be used uninitialized [-Wmaybe-uninitialized] 232 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:71:11: note: ‘MEM[(Scalar &)&fpos3d]’ was declared here 71 | Vector3 fpos3d; | ^~~~~~ In member function ‘std::basic_ostream >::operator<<(double)’, inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:181:76: /usr/include/c++/15/bits/ostream.h:232:25: warning: ‘MEM[(Scalar &)&fpos3d + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 232 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:71:11: note: ‘MEM[(Scalar &)&fpos3d + 8]’ was declared here 71 | Vector3 fpos3d; | ^~~~~~ In member function ‘std::basic_ostream >::operator<<(double)’, inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:189:76: /usr/include/c++/15/bits/ostream.h:232:25: warning: ‘MEM[(Scalar &)&fpos3d + 16]’ may be used uninitialized [-Wmaybe-uninitialized] 232 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:71:11: note: ‘MEM[(Scalar &)&fpos3d + 16]’ was declared here 71 | Vector3 fpos3d; | ^~~~~~ [ 3%] Building CXX object avogadro/core/CMakeFiles/Core.dir/elements.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/elements.cpp.o -MF CMakeFiles/Core.dir/elements.cpp.o.d -o CMakeFiles/Core.dir/elements.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elements.cpp In file included from /usr/include/c++/15/vector:68, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:11, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.cpp:6: In member function ‘std::vector, std::allocator > >::resize(unsigned int, Eigen::Matrix const&)’, inlined from ‘Avogadro::Core::Array >::resize(unsigned int const&, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:177:19, inlined from ‘Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array > const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.cpp:676:16, inlined from ‘Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array > const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.cpp:666:6: /usr/include/c++/15/bits/stl_vector.h:1167:25: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1167 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/vector:74: /usr/include/c++/15/bits/vector.tcc: In function ‘Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array > const&)’: /usr/include/c++/15/bits/vector.tcc:652:5: note: by argument 4 of type ‘const struct value_type &’ to ‘std::vector, std::allocator > >::_M_fill_insert(__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, Eigen::Matrix const&)’ declared here 652 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.cpp:676:16: note: ‘’ declared here 676 | output.resize(coords.size()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ [ 3%] Building CXX object avogadro/core/CMakeFiles/Core.dir/dihedraliterator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/dihedraliterator.cpp.o -MF CMakeFiles/Core.dir/dihedraliterator.cpp.o.d -o CMakeFiles/Core.dir/dihedraliterator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.cpp [ 4%] Building CXX object avogadro/core/CMakeFiles/Core.dir/gaussianset.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/gaussiansettools.cpp.o -MF CMakeFiles/Core.dir/gaussiansettools.cpp.o.d -o CMakeFiles/Core.dir/gaussiansettools.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussiansettools.cpp [ 4%] Linking CXX static library libpugixml.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/thirdparty && /usr/bin/cmake -P CMakeFiles/pugixml.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/thirdparty && /usr/bin/cmake -E cmake_link_script CMakeFiles/pugixml.dir/link.txt --verbose=1 /usr/bin/ar qc libpugixml.a CMakeFiles/pugixml.dir/pugixml/pugixml.cpp.o /usr/bin/ranlib libpugixml.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 4%] Built target pugixml [ 4%] Building CXX object avogadro/core/CMakeFiles/Core.dir/graph.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/graph.cpp.o -MF CMakeFiles/Core.dir/graph.cpp.o.d -o CMakeFiles/Core.dir/graph.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp /usr/bin/gmake -f utilities/bodr/CMakeFiles/bodrparse.dir/build.make utilities/bodr/CMakeFiles/bodrparse.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/utilities/bodr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/utilities/bodr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/utilities/bodr/CMakeFiles/bodrparse.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f utilities/bodr/CMakeFiles/bodrparse.dir/build.make utilities/bodr/CMakeFiles/bodrparse.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 4%] Building CXX object utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/utilities/bodr && /usr/bin/g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o -MF CMakeFiles/bodrparse.dir/bodrparse.cxx.o.d -o CMakeFiles/bodrparse.dir/bodrparse.cxx.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/utilities/bodr/bodrparse.cxx /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp: In member function ‘Avogadro::Core::Graph::removeEdge(unsigned int, unsigned int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:311:5: warning: ‘edgeIndex’ may be used uninitialized [-Wmaybe-uninitialized] 311 | if (m_edgeMap[b][i] == edgeIndex) { | ^~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:299:10: note: ‘edgeIndex’ was declared here 299 | size_t edgeIndex; | ^~~~~~~~~ [ 4%] Linking CXX executable ../../bin/bodrparse cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/utilities/bodr && /usr/bin/cmake -E cmake_link_script CMakeFiles/bodrparse.dir/link.txt --verbose=1 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp: In member function ‘Avogadro::Core::Graph::swapEdgeIndices(unsigned int, unsigned int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:421:17: warning: ‘MEM[(unsigned int * &)&changeTo2]’ may be used uninitialized [-Wmaybe-uninitialized] 421 | *changeTo2[0] = edgeIndex2; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:392:26: note: ‘MEM[(unsigned int * &)&changeTo2]’ was declared here 392 | std::array changeTo2; | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:422:17: warning: ‘MEM[(unsigned int * &)&changeTo2 + 4]’ may be used uninitialized [-Wmaybe-uninitialized] 422 | *changeTo2[1] = edgeIndex2; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:392:26: note: ‘MEM[(unsigned int * &)&changeTo2 + 4]’ was declared here 392 | std::array changeTo2; | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:423:17: warning: ‘MEM[(unsigned int * &)&changeTo1]’ may be used uninitialized [-Wmaybe-uninitialized] 423 | *changeTo1[0] = edgeIndex1; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:405:26: note: ‘MEM[(unsigned int * &)&changeTo1]’ was declared here 405 | std::array changeTo1; | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:424:17: warning: ‘MEM[(unsigned int * &)&changeTo1 + 4]’ may be used uninitialized [-Wmaybe-uninitialized] 424 | *changeTo1[1] = edgeIndex1; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:405:26: note: ‘MEM[(unsigned int * &)&changeTo1 + 4]’ was declared here 405 | std::array changeTo1; | ^~~~~~~~~ [ 4%] Building CXX object avogadro/core/CMakeFiles/Core.dir/layer.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/layer.cpp.o -MF CMakeFiles/Core.dir/layer.cpp.o.d -o CMakeFiles/Core.dir/layer.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layer.cpp [ 4%] Building CXX object avogadro/core/CMakeFiles/Core.dir/layermanager.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/mesh.cpp.o -MF CMakeFiles/Core.dir/mesh.cpp.o.d -o CMakeFiles/Core.dir/mesh.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mesh.cpp [ 4%] Building CXX object avogadro/core/CMakeFiles/Core.dir/molecule.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/bodrparse.dir/link.d CMakeFiles/bodrparse.dir/bodrparse.cxx.o -o ../../bin/bodrparse ../../thirdparty/libpugixml.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 4%] Built target bodrparse [ 5%] Building CXX object avogadro/core/CMakeFiles/Core.dir/mutex.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/mutex.cpp.o -MF CMakeFiles/Core.dir/mutex.cpp.o.d -o CMakeFiles/Core.dir/mutex.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mutex.cpp [ 5%] Building CXX object avogadro/core/CMakeFiles/Core.dir/nameatomtyper.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/nameatomtyper.cpp.o -MF CMakeFiles/Core.dir/nameatomtyper.cpp.o.d -o CMakeFiles/Core.dir/nameatomtyper.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/nameatomtyper.cpp [ 5%] Building CXX object avogadro/core/CMakeFiles/Core.dir/neighborperceiver.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/neighborperceiver.cpp.o -MF CMakeFiles/Core.dir/neighborperceiver.cpp.o.d -o CMakeFiles/Core.dir/neighborperceiver.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h: In copy constructor ‘Avogadro::Core::Molecule::Molecule(const Avogadro::Core::Molecule&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:857:24: warning: ‘Avogadro::Core::Molecule::m_atomicNumbers’ will be initialized after [-Wreorder] 857 | Array m_atomicNumbers; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:850:19: warning: ‘Eigen::VectorXd Avogadro::Core::Molecule::m_frozenAtomMask’ [-Wreorder] 850 | Eigen::VectorXd m_frozenAtomMask; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:37:1: warning: when initialized here [-Wreorder] 37 | Molecule::Molecule(const Molecule& other) | ^~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h: In constructor ‘Avogadro::Core::Molecule::Molecule(Avogadro::Core::Molecule&&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:857:24: warning: ‘Avogadro::Core::Molecule::m_atomicNumbers’ will be initialized after [-Wreorder] 857 | Array m_atomicNumbers; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:850:19: warning: ‘Eigen::VectorXd Avogadro::Core::Molecule::m_frozenAtomMask’ [-Wreorder] 850 | Eigen::VectorXd m_frozenAtomMask; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:133:1: warning: when initialized here [-Wreorder] 133 | Molecule::Molecule(Molecule&& other) noexcept | ^~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp: In member function ‘void Avogadro::Core::Molecule::setFrozenAtom(Avogadro::Index, bool)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:367:31: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘int’} and ‘std::size_t’ {aka ‘unsigned int’} [-Wsign-compare] 367 | if (m_frozenAtomMask.rows() != 3 * m_atomicNumbers.size()) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:371:31: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 371 | if (m_frozenAtomMask.rows() > size) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:372:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] 372 | for (unsigned int i = size; i < m_frozenAtomMask.rows(); ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:376:18: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] 376 | if (atomId * 3 <= m_frozenAtomMask.rows() - 3) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp: In member function ‘bool Avogadro::Core::Molecule::frozenAtom(Avogadro::Index) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:386:18: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] 386 | if (atomId * 3 <= m_frozenAtomMask.rows() - 3) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp: In member function ‘void Avogadro::Core::Molecule::setFrozenAtomAxis(Avogadro::Index, int, bool)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:398:31: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘int’} and ‘std::size_t’ {aka ‘unsigned int’} [-Wsign-compare] 398 | if (m_frozenAtomMask.rows() != 3 * m_atomicNumbers.size()) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:402:31: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 402 | if (m_frozenAtomMask.rows() > size) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:403:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] 403 | for (unsigned int i = size; i < m_frozenAtomMask.rows(); ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:407:18: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] 407 | if (atomId * 3 <= m_frozenAtomMask.rows() - 3) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object avogadro/core/CMakeFiles/Core.dir/residue.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/residue.cpp.o -MF CMakeFiles/Core.dir/residue.cpp.o.d -o CMakeFiles/Core.dir/residue.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mesh.h:15, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mesh.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned int, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned int, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned int, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::Core::Mesh::smooth(int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mesh.cpp:189:46: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.193443].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mesh.cpp: In member function ‘Avogadro::Core::Mesh::smooth(int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mesh.cpp:189:46: note: ‘’ declared here 189 | Array planarList(m_vertices.size()); | ^ [ 5%] Building CXX object avogadro/core/CMakeFiles/Core.dir/ringperceiver.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/ringperceiver.cpp.o -MF CMakeFiles/Core.dir/ringperceiver.cpp.o.d -o CMakeFiles/Core.dir/ringperceiver.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ringperceiver.cpp [ 5%] Building CXX object avogadro/core/CMakeFiles/Core.dir/secondarystructure.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/secondarystructure.cpp.o -MF CMakeFiles/Core.dir/secondarystructure.cpp.o.d -o CMakeFiles/Core.dir/secondarystructure.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/secondarystructure.cpp [ 6%] Building CXX object avogadro/core/CMakeFiles/Core.dir/slaterset.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/slaterset.cpp.o -MF CMakeFiles/Core.dir/slaterset.cpp.o.d -o CMakeFiles/Core.dir/slaterset.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.cpp [ 6%] Building CXX object avogadro/core/CMakeFiles/Core.dir/slatersettools.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/slatersettools.cpp.o -MF CMakeFiles/Core.dir/slatersettools.cpp.o.d -o CMakeFiles/Core.dir/slatersettools.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slatersettools.cpp [ 6%] Building CXX object avogadro/core/CMakeFiles/Core.dir/spacegroups.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/spacegroups.cpp.o -MF CMakeFiles/Core.dir/spacegroups.cpp.o.d -o CMakeFiles/Core.dir/spacegroups.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroups.cpp [ 6%] Building CXX object avogadro/core/CMakeFiles/Core.dir/symbolatomtyper.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/symbolatomtyper.cpp.o -MF CMakeFiles/Core.dir/symbolatomtyper.cpp.o.d -o CMakeFiles/Core.dir/symbolatomtyper.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/symbolatomtyper.cpp [ 6%] Building CXX object avogadro/core/CMakeFiles/Core.dir/unitcell.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/unitcell.cpp.o -MF CMakeFiles/Core.dir/unitcell.cpp.o.d -o CMakeFiles/Core.dir/unitcell.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.cpp [ 6%] Building CXX object avogadro/core/CMakeFiles/Core.dir/variantmap.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/variantmap.cpp.o -MF CMakeFiles/Core.dir/variantmap.cpp.o.d -o CMakeFiles/Core.dir/variantmap.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variantmap.cpp [ 6%] Building CXX object avogadro/core/CMakeFiles/Core.dir/version.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/version.cpp.o -MF CMakeFiles/Core.dir/version.cpp.o.d -o CMakeFiles/Core.dir/version.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/version.cpp [ 7%] Building CXX object avogadro/core/CMakeFiles/Core.dir/sharedmutex.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/sharedmutex.cpp.o -MF CMakeFiles/Core.dir/sharedmutex.cpp.o.d -o CMakeFiles/Core.dir/sharedmutex.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/sharedmutex.cpp [ 7%] Building CXX object avogadro/core/CMakeFiles/Core.dir/avospglib.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/avospglib.cpp.o -MF CMakeFiles/Core.dir/avospglib.cpp.o.d -o CMakeFiles/Core.dir/avospglib.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/avospglib.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.cpp: In function ‘__static_initialization_and_destruction_0()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.cpp:162:1: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without 162 | } // namespace Avogadro | ^ [ 7%] Linking CXX shared library ../../lib/libAvogadroCore.so cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/cmake -E cmake_link_script CMakeFiles/Core.dir/link.txt --verbose=1 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ringperceiver.cpp: In member function ‘__ct_base ’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ringperceiver.cpp:82:64: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 82 | m_values = new std::vector>[ size * size ]; | ^ /usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.cpp: In function ‘__static_initialization_and_destruction_0’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.cpp:162:1: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without 162 | } // namespace Avogadro | ^ /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--dependency-file=CMakeFiles/Core.dir/link.d -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroCore.so.1 -o ../../lib/libAvogadroCore.so.1.99.0 CMakeFiles/Core.dir/angleiterator.cpp.o CMakeFiles/Core.dir/atomutilities.cpp.o CMakeFiles/Core.dir/coordinateblockgenerator.cpp.o CMakeFiles/Core.dir/crystaltools.cpp.o CMakeFiles/Core.dir/cube.cpp.o CMakeFiles/Core.dir/elements.cpp.o CMakeFiles/Core.dir/dihedraliterator.cpp.o CMakeFiles/Core.dir/gaussianset.cpp.o CMakeFiles/Core.dir/gaussiansettools.cpp.o CMakeFiles/Core.dir/graph.cpp.o CMakeFiles/Core.dir/layer.cpp.o CMakeFiles/Core.dir/layermanager.cpp.o CMakeFiles/Core.dir/mesh.cpp.o CMakeFiles/Core.dir/molecule.cpp.o CMakeFiles/Core.dir/mutex.cpp.o CMakeFiles/Core.dir/nameatomtyper.cpp.o CMakeFiles/Core.dir/neighborperceiver.cpp.o CMakeFiles/Core.dir/residue.cpp.o CMakeFiles/Core.dir/ringperceiver.cpp.o CMakeFiles/Core.dir/secondarystructure.cpp.o CMakeFiles/Core.dir/slaterset.cpp.o CMakeFiles/Core.dir/slatersettools.cpp.o CMakeFiles/Core.dir/spacegroups.cpp.o CMakeFiles/Core.dir/symbolatomtyper.cpp.o CMakeFiles/Core.dir/unitcell.cpp.o CMakeFiles/Core.dir/variantmap.cpp.o CMakeFiles/Core.dir/version.cpp.o CMakeFiles/Core.dir/sharedmutex.cpp.o CMakeFiles/Core.dir/avospglib.cpp.o /usr/lib/libsymspg.so.2.6.0 -lm cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroCore.so.1.99.0 ../../lib/libAvogadroCore.so.1 ../../lib/libAvogadroCore.so gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 7%] Built target Core /usr/bin/gmake -f avogadro/calc/CMakeFiles/Calc.dir/build.make avogadro/calc/CMakeFiles/Calc.dir/depend /usr/bin/gmake -f avogadro/io/CMakeFiles/IO.dir/build.make avogadro/io/CMakeFiles/IO.dir/depend /usr/bin/gmake -f avogadro/rendering/CMakeFiles/Rendering.dir/build.make avogadro/rendering/CMakeFiles/Rendering.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc/CMakeFiles/Calc.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd 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Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_bake_vs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_bake_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/sphere_ao_bake_vs.h sphere_ao_bake_vs [ 11%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_depth_fs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_depth_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/sphere_ao_depth_fs.h sphere_ao_depth_fs [ 11%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_depth_vs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_depth_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/sphere_ao_depth_vs.h sphere_ao_depth_vs [ 11%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_render_fs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_render_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/sphere_ao_render_fs.h sphere_ao_render_fs [ 11%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_render_vs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_render_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/sphere_ao_render_vs.h sphere_ao_render_vs [ 11%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheres_fs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheres_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/spheres_fs.h spheres_fs [ 11%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheres_vs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheres_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/spheres_vs.h spheres_vs [ 11%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase_fs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/textlabelbase_fs.h textlabelbase_fs cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/CMakeFiles/Rendering.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/rendering/CMakeFiles/Rendering.dir/build.make avogadro/rendering/CMakeFiles/Rendering.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/arcsector.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/arcsector.cpp.o -MF CMakeFiles/Rendering.dir/arcsector.cpp.o.d -o CMakeFiles/Rendering.dir/arcsector.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcsector.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/nlohmann/json.hpp:39, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cjsonformat.cpp:19: /usr/include/c++/15/ciso646:46:4: warning: #warning " is deprecated in C++17, use to detect implementation-specific macros" [-Wcpp] 46 | # warning " is deprecated in C++17, use to detect implementation-specific macros" | ^~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemodel.cpp: In member function ‘virtual double Avogadro::Calc::ChargeModel::potential(Avogadro::Core::Molecule&, const Avogadro::Vector3&) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemodel.cpp:38:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::EigenBase >::Index’ {aka ‘int’} [-Wsign-compare] 38 | for (unsigned int i = 0; i < charges.size(); ++i) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cjsonformat.cpp: In function ‘json Avogadro::Io::eigenColToJson(const Avogadro::MatrixX&, int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cjsonformat.cpp:87:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] 87 | for (Index i = 0; i < matrix.rows(); ++i) { | ~~^~~~~~~~~~~~~~~ [ 12%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/arcstrip.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/arcstrip.cpp.o -MF CMakeFiles/Rendering.dir/arcstrip.cpp.o.d -o CMakeFiles/Rendering.dir/arcstrip.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcstrip.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcsector.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcsector.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned int, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned int, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned int, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::Rendering::ArcSector::setArcSector(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcsector.cpp:28:33: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.201200].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcsector.cpp: In member function ‘Avogadro::Rendering::ArcSector::setArcSector(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcsector.cpp:28:33: note: ‘’ declared here 28 | Array verts(numVerts); | ^ [ 12%] Building CXX object avogadro/io/CMakeFiles/IO.dir/cmlformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/cmlformat.cpp.o -MF CMakeFiles/IO.dir/cmlformat.cpp.o.d -o CMakeFiles/IO.dir/cmlformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cmlformat.cpp [ 12%] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/defaultmodel.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc && /usr/bin/g++ -DCalc_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/defaultmodel.cpp.o -MF CMakeFiles/Calc.dir/defaultmodel.cpp.o.d -o CMakeFiles/Calc.dir/defaultmodel.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/defaultmodel.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcstrip.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcstrip.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned int, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned int, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned int, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::Rendering::ArcStrip::setArc(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float, float)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcstrip.cpp:23:39: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.202584].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcstrip.cpp: In member function ‘Avogadro::Rendering::ArcStrip::setArc(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float, float)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcstrip.cpp:23:39: note: ‘’ declared here 23 | Core::Array verts(numVerts); | ^ [ 12%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/arrowgeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/arrowgeometry.cpp.o -MF CMakeFiles/Rendering.dir/arrowgeometry.cpp.o.d -o CMakeFiles/Rendering.dir/arrowgeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.cpp [ 12%] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/energycalculator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc && /usr/bin/g++ -DCalc_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/energycalculator.cpp.o -MF CMakeFiles/Calc.dir/energycalculator.cpp.o.d -o CMakeFiles/Calc.dir/energycalculator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energycalculator.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energycalculator.cpp: In member function ‘void Avogadro::Calc::EnergyCalculator::cleanGradients(cppoptlib::Problem::TVector&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energycalculator.cpp:29:21: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 29 | if (m_mask.rows() == size) | ~~~~~~~~~~~~~~^~~~~~~ [ 12%] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/energymanager.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc && /usr/bin/g++ -DCalc_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/energymanager.cpp.o -MF CMakeFiles/Calc.dir/energymanager.cpp.o.d -o CMakeFiles/Calc.dir/energymanager.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energymanager.cpp [ 12%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/beziergeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/beziergeometry.cpp.o -MF CMakeFiles/Rendering.dir/beziergeometry.cpp.o.d -o CMakeFiles/Rendering.dir/beziergeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/beziergeometry.cpp [ 12%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/bufferobject.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/bufferobject.cpp.o -MF CMakeFiles/Rendering.dir/bufferobject.cpp.o.d -o CMakeFiles/Rendering.dir/bufferobject.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bufferobject.cpp [ 12%] Building CXX object avogadro/io/CMakeFiles/IO.dir/cmsgpackformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/cmsgpackformat.cpp.o -MF CMakeFiles/IO.dir/cmsgpackformat.cpp.o.d -o CMakeFiles/IO.dir/cmsgpackformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cmsgpackformat.cpp [ 13%] Building CXX object avogadro/io/CMakeFiles/IO.dir/dcdformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/dcdformat.cpp.o -MF CMakeFiles/IO.dir/dcdformat.cpp.o.d -o CMakeFiles/IO.dir/dcdformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/dcdformat.cpp [ 13%] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/lennardjones.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc && /usr/bin/g++ -DCalc_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/lennardjones.cpp.o -MF CMakeFiles/Calc.dir/lennardjones.cpp.o.d -o CMakeFiles/Calc.dir/lennardjones.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp [ 13%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/bsplinegeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/bsplinegeometry.cpp.o -MF CMakeFiles/Rendering.dir/bsplinegeometry.cpp.o.d -o CMakeFiles/Rendering.dir/bsplinegeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h: In constructor ‘Avogadro::Calc::LennardJones::LennardJones()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:56:7: warning: ‘Avogadro::Calc::LennardJones::m_exponent’ will be initialized after [-Wreorder] 56 | int m_exponent; | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:52:19: warning: ‘Avogadro::Core::UnitCell* Avogadro::Calc::LennardJones::m_cell’ [-Wreorder] 52 | Core::UnitCell* m_cell; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:14:1: warning: when initialized here [-Wreorder] 14 | LennardJones::LennardJones() | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:52:19: warning: ‘Avogadro::Calc::LennardJones::m_cell’ will be initialized after [-Wreorder] 52 | Core::UnitCell* m_cell; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:51:19: warning: ‘Avogadro::Core::Molecule* Avogadro::Calc::LennardJones::m_molecule’ [-Wreorder] 51 | Core::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:14:1: warning: when initialized here [-Wreorder] 14 | LennardJones::LennardJones() | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp: In member function ‘virtual void Avogadro::Calc::LennardJones::setMolecule(Avogadro::Core::Molecule*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:46:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 46 | for (Index i = 0; i < numAtoms; ++i) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:55:29: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 55 | for (Index j = i + 1; j < numAtoms; ++j) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp: In member function ‘virtual Avogadro::Real Avogadro::Calc::LennardJones::value(const Eigen::VectorXd&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:84:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 84 | for (Index i = 0; i < numAtoms; ++i) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:86:31: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 86 | for (Index j = i + 1; j < numAtoms; ++j) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:98:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 98 | for (Index i = 0; i < numAtoms; ++i) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:100:31: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 100 | for (Index j = i + 1; j < numAtoms; ++j) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp: In member function ‘virtual void Avogadro::Calc::LennardJones::gradient(const Eigen::VectorXd&, Eigen::VectorXd&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:128:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 128 | for (Index i = 0; i < numAtoms; ++i) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:130:31: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 130 | for (Index j = i + 1; j < numAtoms; ++j) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:154:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 154 | for (Index i = 0; i < numAtoms; ++i) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:156:31: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 156 | for (Index j = i + 1; j < numAtoms; ++j) { | ~~^~~~~~~~~~ [ 14%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/cartoongeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/cartoongeometry.cpp.o -MF CMakeFiles/Rendering.dir/cartoongeometry.cpp.o.d -o CMakeFiles/Rendering.dir/cartoongeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp [ 14%] Linking CXX shared library ../../lib/libAvogadroCalc.so cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc && /usr/bin/cmake -E cmake_link_script CMakeFiles/Calc.dir/link.txt --verbose=1 In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:46:21: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&vert1].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:43:23: note: ‘vert1’ declared here 43 | ColorNormalVertex vert1; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:46:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:43:23: note: ‘vert1’ declared here 43 | ColorNormalVertex vert1; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:46:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].padding’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:43:23: note: ‘vert1’ declared here 43 | ColorNormalVertex vert1; | ^~~~~ In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:51:21: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&vert2].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:48:23: note: ‘vert2’ declared here 48 | ColorNormalVertex vert2; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:51:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:48:23: note: ‘vert2’ declared here 48 | ColorNormalVertex vert2; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:51:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].padding’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:48:23: note: ‘vert2’ declared here 48 | ColorNormalVertex vert2; | ^~~~~ [ 14%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/camera.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/camera.cpp.o -MF CMakeFiles/Rendering.dir/camera.cpp.o.d -o CMakeFiles/Rendering.dir/camera.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/camera.cpp [ 14%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/curvegeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/curvegeometry.cpp.o -MF CMakeFiles/Rendering.dir/curvegeometry.cpp.o.d -o CMakeFiles/Rendering.dir/curvegeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--dependency-file=CMakeFiles/Calc.dir/link.d -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroCalc.so.1 -o ../../lib/libAvogadroCalc.so.1.99.0 CMakeFiles/Calc.dir/chargemodel.cpp.o CMakeFiles/Calc.dir/chargemanager.cpp.o CMakeFiles/Calc.dir/defaultmodel.cpp.o CMakeFiles/Calc.dir/energycalculator.cpp.o CMakeFiles/Calc.dir/energymanager.cpp.o CMakeFiles/Calc.dir/lennardjones.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/lib: ../../lib/libAvogadroCore.so.1.99.0 cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroCalc.so.1.99.0 ../../lib/libAvogadroCalc.so.1 ../../lib/libAvogadroCalc.so gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 14%] Built target Calc [ 14%] Building CXX object avogadro/io/CMakeFiles/IO.dir/fileformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/fileformat.cpp.o -MF CMakeFiles/IO.dir/fileformat.cpp.o.d -o CMakeFiles/IO.dir/fileformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.cpp [ 14%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/cylindergeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/cylindergeometry.cpp.o -MF CMakeFiles/Rendering.dir/cylindergeometry.cpp.o.d -o CMakeFiles/Rendering.dir/cylindergeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:6: In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:63:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:59:23: note: ‘vert1’ declared here 59 | ColorNormalVertex vert1; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:63:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].padding’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:59:23: note: ‘vert1’ declared here 59 | ColorNormalVertex vert1; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:69:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:65:23: note: ‘vert2’ declared here 65 | ColorNormalVertex vert2; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:69:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].padding’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:65:23: note: ‘vert2’ declared here 65 | ColorNormalVertex vert2; | ^~~~~ [ 14%] Building CXX object avogadro/io/CMakeFiles/IO.dir/fileformatmanager.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/fileformatmanager.cpp.o -MF CMakeFiles/IO.dir/fileformatmanager.cpp.o.d -o CMakeFiles/IO.dir/fileformatmanager.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.cpp In file included from /usr/include/eigen3/Eigen/Core:253, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:12: In member function ‘Eigen::internal::scalar_difference_op::operator()(float const&, float const&) const’, inlined from ‘Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(int, int) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22, inlined from ‘Eigen::internal::unary_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const>, Eigen::internal::IndexBased, float>::coeff(int, int) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40, inlined from ‘Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::coeffByOuterInner(int, int) const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 1>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:110:78, inlined from ‘Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 3, 2>::run, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> const&)float’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::redux >(Eigen::internal::scalar_sum_op const&) constfloat’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::squaredNorm() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::normalized() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31, inlined from ‘Avogadro::Rendering::CurveGeometry::update(int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:97:45: /usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: ‘MEM[(float &)&previous]’ may be used uninitialized [-Wmaybe-uninitialized] 359 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; } | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::update(int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:87:12: note: ‘MEM[(float &)&previous]’ was declared here 87 | Vector3f previous; | ^~~~~~~~ In member function ‘Eigen::internal::scalar_difference_op::operator()(float const&, float const&) const’, inlined from ‘Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(int, int) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22, inlined from ‘Eigen::internal::unary_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const>, Eigen::internal::IndexBased, float>::coeff(int, int) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40, inlined from ‘Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::coeffByOuterInner(int, int) const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 1, 1>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 1, 2>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:110:78, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from ‘Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 3, 2>::run, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> const&)float’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::redux >(Eigen::internal::scalar_sum_op const&) constfloat’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::squaredNorm() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::normalized() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31, inlined from ‘Avogadro::Rendering::CurveGeometry::update(int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:97:45: /usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: ‘MEM[(float &)&previous + 4]’ may be used uninitialized [-Wmaybe-uninitialized] 359 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; } | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::update(int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:87:12: note: ‘MEM[(float &)&previous + 4]’ was declared here 87 | Vector3f previous; | ^~~~~~~~ In member function ‘Eigen::internal::scalar_difference_op::operator()(float const&, float const&) const’, inlined from ‘Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(int, int) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22, inlined from ‘Eigen::internal::unary_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const>, Eigen::internal::IndexBased, float>::coeff(int, int) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40, inlined from ‘Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::coeffByOuterInner(int, int) const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 2, 1>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 1, 2>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from ‘Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 3, 2>::run, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> const&)float’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::redux >(Eigen::internal::scalar_sum_op const&) constfloat’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::squaredNorm() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::normalized() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31, inlined from ‘Avogadro::Rendering::CurveGeometry::update(int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:97:45: /usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: ‘MEM[(float &)&previous + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 359 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; } | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::update(int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:87:12: note: ‘MEM[(float &)&previous + 8]’ was declared here 87 | Vector3f previous; | ^~~~~~~~ [ 14%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/dashedlinegeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/dashedlinegeometry.cpp.o -MF CMakeFiles/Rendering.dir/dashedlinegeometry.cpp.o.d -o CMakeFiles/Rendering.dir/dashedlinegeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.cpp [ 14%] Building CXX object avogadro/io/CMakeFiles/IO.dir/gromacsformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/gromacsformat.cpp.o -MF CMakeFiles/IO.dir/gromacsformat.cpp.o.d -o CMakeFiles/IO.dir/gromacsformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/gromacsformat.cpp [ 14%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/drawable.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/drawable.cpp.o -MF CMakeFiles/Rendering.dir/drawable.cpp.o.d -o CMakeFiles/Rendering.dir/drawable.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp:9: In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::CylinderGeometry::update()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp:119:35: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp: In member function ‘Avogadro::Rendering::CylinderGeometry::update()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp:112:25: note: ‘vert’ declared here 112 | ColorNormalVertex vert(itCylinder->color, -direction, position1); | ^~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::CylinderGeometry::update()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp:119:35: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert].padding’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp: In member function ‘Avogadro::Rendering::CylinderGeometry::update()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp:112:25: note: ‘vert’ declared here 112 | ColorNormalVertex vert(itCylinder->color, -direction, position1); | ^~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::CylinderGeometry::update()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp:122:35: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp: In member function ‘Avogadro::Rendering::CylinderGeometry::update()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp:113:25: note: ‘vert2’ declared here 113 | ColorNormalVertex vert2(itCylinder->color2, -direction, position1); | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::CylinderGeometry::update()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp:122:35: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].padding’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp: In member function ‘Avogadro::Rendering::CylinderGeometry::update()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp:113:25: note: ‘vert2’ declared here 113 | ColorNormalVertex vert2(itCylinder->color2, -direction, position1); | ^~~~~ [ 14%] Building CXX object avogadro/io/CMakeFiles/IO.dir/mdlformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/mdlformat.cpp.o -MF CMakeFiles/IO.dir/mdlformat.cpp.o.d -o CMakeFiles/IO.dir/mdlformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/mdlformat.cpp [ 14%] Building CXX object avogadro/io/CMakeFiles/IO.dir/vaspformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/vaspformat.cpp.o -MF CMakeFiles/IO.dir/vaspformat.cpp.o.d -o CMakeFiles/IO.dir/vaspformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/vaspformat.cpp [ 15%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/geometrynode.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/geometrynode.cpp.o -MF CMakeFiles/Rendering.dir/geometrynode.cpp.o.d -o CMakeFiles/Rendering.dir/geometrynode.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometrynode.cpp [ 15%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/geometryvisitor.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/geometryvisitor.cpp.o -MF CMakeFiles/Rendering.dir/geometryvisitor.cpp.o.d -o CMakeFiles/Rendering.dir/geometryvisitor.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.cpp [ 15%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/groupnode.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/groupnode.cpp.o -MF CMakeFiles/Rendering.dir/groupnode.cpp.o.d -o CMakeFiles/Rendering.dir/groupnode.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.cpp [ 16%] Building CXX object avogadro/io/CMakeFiles/IO.dir/pdbformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/pdbformat.cpp.o -MF CMakeFiles/IO.dir/pdbformat.cpp.o.d -o CMakeFiles/IO.dir/pdbformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/pdbformat.cpp [ 16%] Building CXX object avogadro/io/CMakeFiles/IO.dir/xyzformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/xyzformat.cpp.o -MF CMakeFiles/IO.dir/xyzformat.cpp.o.d -o CMakeFiles/IO.dir/xyzformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/xyzformat.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/nlohmann/json.hpp:39, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/xyzformat.cpp:14: /usr/include/c++/15/ciso646:46:4: warning: #warning " is deprecated in C++17, use to detect implementation-specific macros" [-Wcpp] 46 | # warning " is deprecated in C++17, use to detect implementation-specific macros" | ^~~~~~~ [ 16%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/glrenderer.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro 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-fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/glrenderer.cpp.o -MF CMakeFiles/Rendering.dir/glrenderer.cpp.o.d -o CMakeFiles/Rendering.dir/glrenderer.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.cpp [ 16%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/glrendervisitor.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/glrendervisitor.cpp.o -MF CMakeFiles/Rendering.dir/glrendervisitor.cpp.o.d -o CMakeFiles/Rendering.dir/glrendervisitor.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.cpp [ 16%] Building CXX object avogadro/io/CMakeFiles/IO.dir/trrformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/trrformat.cpp.o -MF CMakeFiles/IO.dir/trrformat.cpp.o.d -o CMakeFiles/IO.dir/trrformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/trrformat.cpp [ 16%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/linestripgeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/linestripgeometry.cpp.o -MF CMakeFiles/Rendering.dir/linestripgeometry.cpp.o.d -o CMakeFiles/Rendering.dir/linestripgeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.cpp [ 16%] Building CXX object avogadro/io/CMakeFiles/IO.dir/turbomoleformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/turbomoleformat.cpp.o -MF CMakeFiles/IO.dir/turbomoleformat.cpp.o.d -o CMakeFiles/IO.dir/turbomoleformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/turbomoleformat.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/nlohmann/json.hpp:39, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/turbomoleformat.cpp:14: /usr/include/c++/15/ciso646:46:4: warning: #warning " is deprecated in C++17, use to detect implementation-specific macros" [-Wcpp] 46 | # warning " is deprecated in C++17, use to detect implementation-specific macros" | ^~~~~~~ [ 16%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/meshgeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/meshgeometry.cpp.o -MF CMakeFiles/Rendering.dir/meshgeometry.cpp.o.d -o CMakeFiles/Rendering.dir/meshgeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp [ 17%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/node.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/node.cpp.o -MF CMakeFiles/Rendering.dir/node.cpp.o.d -o CMakeFiles/Rendering.dir/node.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.cpp [ 17%] Building CXX object avogadro/io/CMakeFiles/IO.dir/lammpsformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/lammpsformat.cpp.o -MF CMakeFiles/IO.dir/lammpsformat.cpp.o.d -o CMakeFiles/IO.dir/lammpsformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/lammpsformat.cpp [ 17%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/plyvisitor.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/plyvisitor.cpp.o -MF CMakeFiles/Rendering.dir/plyvisitor.cpp.o.d -o CMakeFiles/Rendering.dir/plyvisitor.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp:6: In member function ‘Avogadro::Rendering::MeshGeometry::PackedVertex::PackedVertex(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::MeshGeometry::PackedVertex*, Avogadro::Rendering::MeshGeometry::PackedVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::MeshGeometry::PackedVertex*, Avogadro::Rendering::MeshGeometry::PackedVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Core::Array::push_back(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:250:22, inlined from ‘Avogadro::Rendering::MeshGeometry::addVertices(Avogadro::Core::Array > const&, Avogadro::Core::Array > const&, Avogadro::Core::Array > const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp:241:25: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:25:10: warning: ‘MEM[(const struct PackedVertex &)&D.270569].padding’ may be used uninitialized [-Wmaybe-uninitialized] 25 | struct PackedVertex | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp: In member function ‘Avogadro::Rendering::MeshGeometry::addVertices(Avogadro::Core::Array > const&, Avogadro::Core::Array > const&, Avogadro::Core::Array > const&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp:241:71: note: ‘’ declared here 241 | m_vertices.push_back(PackedVertex(tmpColor, *(nIter++), *(vIter++))); | ^ In member function ‘Avogadro::Rendering::MeshGeometry::PackedVertex::PackedVertex(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::MeshGeometry::PackedVertex*, Avogadro::Rendering::MeshGeometry::PackedVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::MeshGeometry::PackedVertex*, Avogadro::Rendering::MeshGeometry::PackedVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Core::Array::push_back(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:250:22, inlined from ‘Avogadro::Rendering::MeshGeometry::addVertices(Avogadro::Core::Array > const&, Avogadro::Core::Array > const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp:263:25: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:25:10: warning: ‘MEM[(const struct PackedVertex &)&D.270619].padding’ may be used uninitialized [-Wmaybe-uninitialized] 25 | struct PackedVertex | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp: In member function ‘Avogadro::Rendering::MeshGeometry::addVertices(Avogadro::Core::Array > const&, Avogadro::Core::Array > const&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp:263:71: note: ‘’ declared here 263 | m_vertices.push_back(PackedVertex(tmpColor, *(nIter++), *(vIter++))); | ^ In member function ‘Avogadro::Rendering::MeshGeometry::PackedVertex::PackedVertex(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::MeshGeometry::PackedVertex*, Avogadro::Rendering::MeshGeometry::PackedVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::MeshGeometry::PackedVertex*, Avogadro::Rendering::MeshGeometry::PackedVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Core::Array::push_back(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:250:22, inlined from ‘Avogadro::Rendering::MeshGeometry::addVertices(Avogadro::Core::Array > const&, Avogadro::Core::Array > const&, Avogadro::Core::Array > const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp:217:25: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:25:10: warning: ‘MEM[(const struct PackedVertex &)&D.265835].padding’ may be used uninitialized [-Wmaybe-uninitialized] 25 | struct PackedVertex | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp: In member function ‘Avogadro::Rendering::MeshGeometry::addVertices(Avogadro::Core::Array > const&, Avogadro::Core::Array > const&, Avogadro::Core::Array > const&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp:217:73: note: ‘’ declared here 217 | m_vertices.push_back(PackedVertex(*(cIter++), *(nIter++), *(vIter++))); | ^ [ 17%] Building CXX object avogadro/io/CMakeFiles/IO.dir/hdf5dataformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/hdf5dataformat.cpp.o -MF CMakeFiles/IO.dir/hdf5dataformat.cpp.o.d -o CMakeFiles/IO.dir/hdf5dataformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.cpp [ 17%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/povrayvisitor.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/povrayvisitor.cpp.o -MF CMakeFiles/Rendering.dir/povrayvisitor.cpp.o.d -o CMakeFiles/Rendering.dir/povrayvisitor.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.cpp [ 18%] Building CXX object avogadro/io/CMakeFiles/IO.dir/mmtfformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/mmtfformat.cpp.o -MF CMakeFiles/IO.dir/mmtfformat.cpp.o.d -o CMakeFiles/IO.dir/mmtfformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/mmtfformat.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/lammpsformat.cpp: In member function ‘Avogadro::Io::LammpsTrajectoryFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/lammpsformat.cpp:268:5: warning: ‘numAtoms2’ may be used uninitialized [-Wmaybe-uninitialized] 268 | if (numAtoms2 != numAtoms) { | ^~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/lammpsformat.cpp:231:10: note: ‘numAtoms2’ was declared here 231 | size_t numAtoms2; | ^~~~~~~~~ [ 18%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/quad.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/quad.cpp.o -MF CMakeFiles/Rendering.dir/quad.cpp.o.d -o CMakeFiles/Rendering.dir/quad.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/lammpsformat.cpp: In member function ‘Avogadro::Io::LammpsDataFormat::write(std::basic_ostream >&, Avogadro::Core::Molecule const&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/lammpsformat.cpp:486:41: warning: ‘%-*d’ directive output may be truncated writing between 1 and 2147483647 bytes into a region of size 255 [-Wformat-truncation=] 486 | snprintf(atomline, lineSize - 1, "%-*d %d %10f %10f %10f\n", | ^~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/lammpsformat.cpp:486:40: note: directive argument in the range [1, 2147483647] 486 | snprintf(atomline, lineSize - 1, "%-*d %d %10f %10f %10f\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/lammpsformat.cpp:486:40: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:970, from /usr/include/c++/15/cstdio:47, from /usr/include/c++/15/ext/string_conversions.h:47, from /usr/include/c++/15/bits/basic_string.h:4444, from /usr/include/c++/15/string:56, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/lammpsformat.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/lammpsformat.cpp:6: In function ‘snprintf’, inlined from ‘Avogadro::Io::LammpsDataFormat::write(std::basic_ostream >&, Avogadro::Core::Molecule const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/lammpsformat.cpp:486:15: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 38 and 2147484615 bytes into a destination of size 255 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned int, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned int, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned int, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::Rendering::Quad::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.cpp:20:26: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.203613].m_storage’ is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.cpp: In member function ‘Avogadro::Rendering::Quad::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.cpp:20:26: note: ‘’ declared here 20 | Array verts(4); | ^ [ 18%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/quadoutline.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/quadoutline.cpp.o -MF CMakeFiles/Rendering.dir/quadoutline.cpp.o.d -o CMakeFiles/Rendering.dir/quadoutline.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.cpp [ 18%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/scene.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/scene.cpp.o -MF CMakeFiles/Rendering.dir/scene.cpp.o.d -o CMakeFiles/Rendering.dir/scene.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.cpp [ 19%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/shader.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/shader.cpp.o -MF CMakeFiles/Rendering.dir/shader.cpp.o.d -o CMakeFiles/Rendering.dir/shader.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned int, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned int, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned int, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::Rendering::QuadOutline::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.cpp:16:26: [ 19%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/shaderprogram.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/shaderprogram.cpp.o -MF CMakeFiles/Rendering.dir/shaderprogram.cpp.o.d -o CMakeFiles/Rendering.dir/shaderprogram.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.cpp /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.202300].m_storage’ is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.cpp: In member function ‘Avogadro::Rendering::QuadOutline::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.cpp:16:26: note: ‘’ declared here 16 | Array verts(5); | ^ [ 19%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/solidpipeline.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/solidpipeline.cpp.o -MF CMakeFiles/Rendering.dir/solidpipeline.cpp.o.d -o CMakeFiles/Rendering.dir/solidpipeline.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.cpp [ 19%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/spheregeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/spheregeometry.cpp.o -MF CMakeFiles/Rendering.dir/spheregeometry.cpp.o.d -o CMakeFiles/Rendering.dir/spheregeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.cpp [ 19%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/textlabel2d.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/textlabel2d.cpp.o -MF CMakeFiles/Rendering.dir/textlabel2d.cpp.o.d -o CMakeFiles/Rendering.dir/textlabel2d.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabel2d.cpp [ 19%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/textlabel3d.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/textlabel3d.cpp.o -MF CMakeFiles/Rendering.dir/textlabel3d.cpp.o.d -o CMakeFiles/Rendering.dir/textlabel3d.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabel3d.cpp [ 19%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/textlabelbase.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/textlabelbase.cpp.o -MF CMakeFiles/Rendering.dir/textlabelbase.cpp.o.d -o CMakeFiles/Rendering.dir/textlabelbase.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.cpp [ 20%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/textproperties.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/textproperties.cpp.o -MF CMakeFiles/Rendering.dir/textproperties.cpp.o.d -o CMakeFiles/Rendering.dir/textproperties.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.cpp [ 20%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/textrenderstrategy.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/textrenderstrategy.cpp.o -MF CMakeFiles/Rendering.dir/textrenderstrategy.cpp.o.d -o CMakeFiles/Rendering.dir/textrenderstrategy.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textrenderstrategy.cpp [ 20%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/texture2d.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/texture2d.cpp.o -MF CMakeFiles/Rendering.dir/texture2d.cpp.o.d -o CMakeFiles/Rendering.dir/texture2d.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.cpp [ 20%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/transformnode.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/transformnode.cpp.o -MF CMakeFiles/Rendering.dir/transformnode.cpp.o.d -o CMakeFiles/Rendering.dir/transformnode.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/transformnode.cpp [ 20%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/visitor.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/visitor.cpp.o -MF CMakeFiles/Rendering.dir/visitor.cpp.o.d -o CMakeFiles/Rendering.dir/visitor.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.cpp [ 20%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/volumegeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/volumegeometry.cpp.o -MF CMakeFiles/Rendering.dir/volumegeometry.cpp.o.d -o CMakeFiles/Rendering.dir/volumegeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/volumegeometry.cpp [ 21%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/vrmlvisitor.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/vrmlvisitor.cpp.o -MF CMakeFiles/Rendering.dir/vrmlvisitor.cpp.o.d -o CMakeFiles/Rendering.dir/vrmlvisitor.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.cpp [ 21%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/ambientocclusionspheregeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/ambientocclusionspheregeometry.cpp.o -MF CMakeFiles/Rendering.dir/ambientocclusionspheregeometry.cpp.o.d -o CMakeFiles/Rendering.dir/ambientocclusionspheregeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/ambientocclusionspheregeometry.cpp [ 21%] Linking CXX shared library ../../lib/libAvogadroIO.so cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io && /usr/bin/cmake -E cmake_link_script CMakeFiles/IO.dir/link.txt --verbose=1 [ 21%] Linking CXX shared library ../../lib/libAvogadroRendering.so cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/cmake -E cmake_link_script CMakeFiles/Rendering.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--dependency-file=CMakeFiles/Rendering.dir/link.d -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroRendering.so.1 -o ../../lib/libAvogadroRendering.so.1.99.0 CMakeFiles/Rendering.dir/arcsector.cpp.o CMakeFiles/Rendering.dir/arcstrip.cpp.o CMakeFiles/Rendering.dir/arrowgeometry.cpp.o CMakeFiles/Rendering.dir/beziergeometry.cpp.o CMakeFiles/Rendering.dir/bufferobject.cpp.o CMakeFiles/Rendering.dir/bsplinegeometry.cpp.o CMakeFiles/Rendering.dir/cartoongeometry.cpp.o CMakeFiles/Rendering.dir/camera.cpp.o CMakeFiles/Rendering.dir/curvegeometry.cpp.o CMakeFiles/Rendering.dir/cylindergeometry.cpp.o CMakeFiles/Rendering.dir/dashedlinegeometry.cpp.o CMakeFiles/Rendering.dir/drawable.cpp.o CMakeFiles/Rendering.dir/geometrynode.cpp.o CMakeFiles/Rendering.dir/geometryvisitor.cpp.o CMakeFiles/Rendering.dir/groupnode.cpp.o CMakeFiles/Rendering.dir/glrenderer.cpp.o CMakeFiles/Rendering.dir/glrendervisitor.cpp.o CMakeFiles/Rendering.dir/linestripgeometry.cpp.o CMakeFiles/Rendering.dir/meshgeometry.cpp.o CMakeFiles/Rendering.dir/node.cpp.o CMakeFiles/Rendering.dir/plyvisitor.cpp.o CMakeFiles/Rendering.dir/povrayvisitor.cpp.o CMakeFiles/Rendering.dir/quad.cpp.o CMakeFiles/Rendering.dir/quadoutline.cpp.o CMakeFiles/Rendering.dir/scene.cpp.o CMakeFiles/Rendering.dir/shader.cpp.o CMakeFiles/Rendering.dir/shaderprogram.cpp.o CMakeFiles/Rendering.dir/solidpipeline.cpp.o CMakeFiles/Rendering.dir/spheregeometry.cpp.o CMakeFiles/Rendering.dir/textlabel2d.cpp.o CMakeFiles/Rendering.dir/textlabel3d.cpp.o CMakeFiles/Rendering.dir/textlabelbase.cpp.o CMakeFiles/Rendering.dir/textproperties.cpp.o CMakeFiles/Rendering.dir/textrenderstrategy.cpp.o CMakeFiles/Rendering.dir/texture2d.cpp.o CMakeFiles/Rendering.dir/transformnode.cpp.o CMakeFiles/Rendering.dir/visitor.cpp.o CMakeFiles/Rendering.dir/volumegeometry.cpp.o CMakeFiles/Rendering.dir/vrmlvisitor.cpp.o CMakeFiles/Rendering.dir/ambientocclusionspheregeometry.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/lib: ../../lib/libAvogadroCore.so.1.99.0 /usr/lib/libGLEW.so /usr/lib/libGLX.so /usr/lib/libOpenGL.so cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroRendering.so.1.99.0 ../../lib/libAvogadroRendering.so.1 ../../lib/libAvogadroRendering.so gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 21%] Built target Rendering /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--dependency-file=CMakeFiles/IO.dir/link.d -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroIO.so.1 -o ../../lib/libAvogadroIO.so.1.99.0 CMakeFiles/IO.dir/cjsonformat.cpp.o CMakeFiles/IO.dir/cmlformat.cpp.o CMakeFiles/IO.dir/cmsgpackformat.cpp.o CMakeFiles/IO.dir/dcdformat.cpp.o CMakeFiles/IO.dir/fileformat.cpp.o CMakeFiles/IO.dir/fileformatmanager.cpp.o CMakeFiles/IO.dir/gromacsformat.cpp.o CMakeFiles/IO.dir/mdlformat.cpp.o CMakeFiles/IO.dir/vaspformat.cpp.o CMakeFiles/IO.dir/pdbformat.cpp.o CMakeFiles/IO.dir/xyzformat.cpp.o CMakeFiles/IO.dir/trrformat.cpp.o CMakeFiles/IO.dir/turbomoleformat.cpp.o CMakeFiles/IO.dir/lammpsformat.cpp.o CMakeFiles/IO.dir/hdf5dataformat.cpp.o CMakeFiles/IO.dir/mmtfformat.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/lib: /usr/lib/libhdf5.so ../../lib/libAvogadroCore.so.1.99.0 ../../thirdparty/libstruct.a ../../thirdparty/libpugixml.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroIO.so.1.99.0 ../../lib/libAvogadroIO.so.1 ../../lib/libAvogadroIO.so gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 21%] Built target IO /usr/bin/gmake -f avogadro/quantumio/CMakeFiles/QuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/QuantumIO.dir/depend /usr/bin/gmake -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/depend /usr/bin/gmake -f avogadro/command/CMakeFiles/avobabel.dir/build.make avogadro/command/CMakeFiles/avobabel.dir/depend /usr/bin/gmake -f avogadro/qtgui/CMakeFiles/QtGui_autogen_timestamp_deps.dir/build.make avogadro/qtgui/CMakeFiles/QtGui_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/command /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/command /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/command/CMakeFiles/avocjsontocml.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio/CMakeFiles/QuantumIO.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/command /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/command /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/command/CMakeFiles/avobabel.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/CMakeFiles/QtGui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/build /usr/bin/gmake -f avogadro/command/CMakeFiles/avobabel.dir/build.make avogadro/command/CMakeFiles/avobabel.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/quantumio/CMakeFiles/QuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/QuantumIO.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtgui/CMakeFiles/QtGui_autogen_timestamp_deps.dir/build.make avogadro/qtgui/CMakeFiles/QtGui_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtgui/CMakeFiles/QtGui_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 21%] Building CXX object avogadro/command/CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o [ 22%] Building CXX object avogadro/command/CMakeFiles/avobabel.dir/avobabel.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/command && 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avogadro/quantumio/CMakeFiles/QuantumIO.dir/gamessus.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio && /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 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-pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/gaussianfchk.cpp.o -MF CMakeFiles/QuantumIO.dir/gaussianfchk.cpp.o.d -o CMakeFiles/QuantumIO.dir/gaussianfchk.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.cpp: In member function ‘void Avogadro::QuantumIO::GaussianFchk::processLine(std::istream&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.cpp:194:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 194 | for (unsigned int i = 0; i < m_normalModes; ++i) { | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.cpp:211:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 211 | if (tmpVec.size() == m_numAtoms * 3 * m_normalModes) { | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.cpp:212:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 212 | for (unsigned int i = 0; i < m_normalModes; ++i) { | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.cpp:214:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 214 | for (unsigned int j = 0; j < m_numAtoms; ++j) { | ~~^~~~~~~~~~~~ [ 22%] Linking CXX executable ../../bin/avocjsontocml cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/command && /usr/bin/cmake -E cmake_link_script CMakeFiles/avocjsontocml.dir/link.txt --verbose=1 [ 22%] Linking CXX executable ../../bin/avobabel cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/command && /usr/bin/cmake -E cmake_link_script CMakeFiles/avobabel.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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AutoGen: Parsing "SRC:/avogadro/qtgui/rwlayermanager.h" AutoGen: Parsing "SRC:/avogadro/qtgui/rwmolecule.h" AutoGen: Parsing "SRC:/avogadro/qtgui/sceneplugin.h" AutoGen: Parsing "SRC:/avogadro/qtgui/scenepluginmodel.h" AutoGen: Parsing "SRC:/avogadro/qtgui/scriptloader.h" AutoGen: Parsing "SRC:/avogadro/qtgui/sortfiltertreeproxymodel.h" AutoGen: Parsing "SRC:/avogadro/qtgui/toolplugin.h" AutoGen: Parsing "SRC:/avogadro/qtgui/utilities.h" AutoGen: Parsing "SRC:/avogadro/qtgui/viewfactory.h" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtgui/avogadroqtguiexport.h" AutoGen: Parsing "SRC:/avogadro/qtgui/backgroundfileformat.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/colorbutton.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/containerwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/customelementdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/elementdetail_p.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/elementitem_p.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/elementtranslator.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/extensionplugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/filebrowsewidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/fileformatdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/generichighlighter.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/hydrogentools.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/insertfragmentdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacescript.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacewidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/jsonwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/layermodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/meshgenerator.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/molecule.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/moleculemodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/multiviewwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictablescene_p.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/pluginlayermanager.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/pythonscript.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictableview.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/rwlayermanager.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/rwmolecule.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/sceneplugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/scenepluginmodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/scriptloader.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/sortfiltertreeproxymodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/toolplugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/utilities.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/viewfactory.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/backgroundfileformat.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/backgroundfileformat.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/colorbutton.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/containerwidget.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/customelementdialog.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/customelementdialog.h /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/avobabel.dir/link.d CMakeFiles/avobabel.dir/avobabel.cpp.o -o ../../bin/avobabel -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/lib ../../lib/libAvogadroIO.so.1.99.0 ../../lib/libAvogadroCore.so.1.99.0 gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 22%] Built target avobabel [ 22%] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/gaussiancube.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio && /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/gaussiancube.cpp.o -MF CMakeFiles/QuantumIO.dir/gaussiancube.cpp.o.d -o CMakeFiles/QuantumIO.dir/gaussiancube.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussiancube.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/elementtranslator.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/elementtranslator.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/extensionplugin.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/extensionplugin.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/filebrowsewidget.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/fileformatdialog.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/fileformatdialog.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/generichighlighter.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/generichighlighter.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/insertfragmentdialog.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/interfacescript.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/interfacescript.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/interfacewidget.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/interfacewidget.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/jsonwidget.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_layermodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/layermodel.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_layermodel.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/meshgenerator.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_molecule.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/molecule.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_molecule.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_layermodel.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/moleculemodel.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h [ 22%] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/genericoutput.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio && /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/genericoutput.cpp.o -MF CMakeFiles/QuantumIO.dir/genericoutput.cpp.o.d -o CMakeFiles/QuantumIO.dir/genericoutput.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/genericoutput.cpp [ 22%] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/molden.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio && /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/molden.cpp.o -MF CMakeFiles/QuantumIO.dir/molden.cpp.o.d -o CMakeFiles/QuantumIO.dir/molden.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/molden.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_molecule.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/multiviewwidget.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/periodictablescene_p.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/periodictablescene_p.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/periodictableview.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/periodictableview.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/pythonscript.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/rwmolecule.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/sceneplugin.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/scenepluginmodel.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/scriptloader.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scriptloader.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/sortfiltertreeproxymodel.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/toolplugin.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/toolplugin.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include/multiviewwidget.moc", because it doesn't exist, from "SRC:/avogadro/qtgui/multiviewwidget.cpp" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include/multiviewwidget.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include/multiviewwidget.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtgui/QtGui_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 22%] Built target QtGui_autogen [ 23%] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/mopacaux.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio && /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/mopacaux.cpp.o -MF CMakeFiles/QuantumIO.dir/mopacaux.cpp.o.d -o CMakeFiles/QuantumIO.dir/mopacaux.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/mopacaux.cpp /usr/bin/gmake -f avogadro/qtgui/CMakeFiles/QtGui.dir/build.make avogadro/qtgui/CMakeFiles/QtGui.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 23%] Generating ui_insertfragmentdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/ui_insertfragmentdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.ui [ 23%] Generating qrc_qtgui.cpp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/lib/qt5/bin/rcc --name qtgui --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/qrc_qtgui.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/qtgui.qrc [ 23%] Generating ui_customelementdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/ui_customelementdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/customelementdialog.ui cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/CMakeFiles/QtGui.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtgui/CMakeFiles/QtGui.dir/build.make avogadro/qtgui/CMakeFiles/QtGui.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/QtGui_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/QtGui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QtGui.dir/QtGui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QtGui.dir/QtGui_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/mocs_compilation.cpp [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/backgroundfileformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/backgroundfileformat.cpp.o -MF CMakeFiles/QtGui.dir/backgroundfileformat.cpp.o.d -o CMakeFiles/QtGui.dir/backgroundfileformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/backgroundfileformat.cpp [ 23%] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio && /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o -MF CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o.d -o CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemjson.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/nlohmann/json.hpp:39, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemjson.cpp:15: /usr/include/c++/15/ciso646:46:4: warning: #warning " is deprecated in C++17, use to detect implementation-specific macros" [-Wcpp] 46 | # warning " is deprecated in C++17, use to detect implementation-specific macros" | ^~~~~~~ [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/colorbutton.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/colorbutton.cpp.o -MF CMakeFiles/QtGui.dir/colorbutton.cpp.o.d -o CMakeFiles/QtGui.dir/colorbutton.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.cpp [ 24%] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemlog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio && /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemlog.cpp.o -MF CMakeFiles/QuantumIO.dir/nwchemlog.cpp.o.d -o CMakeFiles/QuantumIO.dir/nwchemlog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemlog.cpp [ 24%] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/orca.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio && /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/orca.cpp.o -MF CMakeFiles/QuantumIO.dir/orca.cpp.o.d -o CMakeFiles/QuantumIO.dir/orca.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp: In member function ‘void Avogadro::QuantumIO::ORCAOutput::processLine(std::istream&, Avogadro::Core::GaussianSet*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:653:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 653 | while (idx < orcaOrbitals.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:656:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 656 | if (idx + 1 >= columns[i].size()) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:662:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 662 | if (idx + 1 >= columns[i].size()) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:732:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 732 | while (idx < orcaOrbitals.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:735:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 735 | if (idx + 1 >= columns[i].size()) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:741:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 741 | if (idx + 1 >= columns[i].size()) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:118:9: warning: variable ‘vibScaling’ set but not used [-Wunused-but-set-variable] 118 | float vibScaling = 1.0f; | ^~~~~~~~~~ [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/containerwidget.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/containerwidget.cpp.o -MF CMakeFiles/QtGui.dir/containerwidget.cpp.o.d -o CMakeFiles/QtGui.dir/containerwidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.cpp [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/customelementdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/customelementdialog.cpp.o -MF CMakeFiles/QtGui.dir/customelementdialog.cpp.o.d -o CMakeFiles/QtGui.dir/customelementdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/customelementdialog.cpp [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/elementdetail_p.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/elementdetail_p.cpp.o -MF CMakeFiles/QtGui.dir/elementdetail_p.cpp.o.d -o CMakeFiles/QtGui.dir/elementdetail_p.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/elementdetail_p.cpp [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/elementitem_p.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/elementitem_p.cpp.o -MF CMakeFiles/QtGui.dir/elementitem_p.cpp.o.d -o CMakeFiles/QtGui.dir/elementitem_p.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/elementitem_p.cpp In file included from /usr/include/eigen3/Eigen/Core:257, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/matrix.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:13, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemjson.cpp:8: In member function ‘Eigen::internal::mul_assign_op::assignCoeff(double&, double const&) const’, inlined from ‘Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeff(int, int)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:654:26, inlined from ‘Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeffByOuterInner(int, int)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘Eigen::internal::copy_using_evaluator_DefaultTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 2, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:211:35, inlined from ‘Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 3, 2>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:456:92, inlined from ‘Eigen::internal::call_dense_assignment_loop, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘Eigen::internal::Assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘Eigen::internal::call_assignment_no_alias, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘Eigen::internal::call_assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:858:27, inlined from ‘Eigen::DenseBase >::operator*=(double const&)’ at /usr/include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h:20:28, inlined from ‘Avogadro::QuantumIO::NWChemJson::read(std::basic_istream >&, Avogadro::Core::Molecule&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemjson.cpp:138:21: /usr/include/eigen3/Eigen/src/Core/functors/AssignmentFunctors.h:92:102: warning: ‘MEM[(double &)&position + 16]’ may be used uninitialized [-Wmaybe-uninitialized] 92 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void assignCoeff(DstScalar& a, const SrcScalar& b) const { a *= b; } | ~~^~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemjson.cpp: In member function ‘Avogadro::QuantumIO::NWChemJson::read(std::basic_istream >&, Avogadro::Core::Molecule&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemjson.cpp:133:15: note: ‘MEM[(double &)&position + 16]’ was declared here 133 | Vector3 position; | ^~~~~~~~ [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/elementtranslator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/elementtranslator.cpp.o -MF CMakeFiles/QtGui.dir/elementtranslator.cpp.o.d -o CMakeFiles/QtGui.dir/elementtranslator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/elementtranslator.cpp [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/extensionplugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/extensionplugin.cpp.o -MF CMakeFiles/QtGui.dir/extensionplugin.cpp.o.d -o CMakeFiles/QtGui.dir/extensionplugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/extensionplugin.cpp [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/filebrowsewidget.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/filebrowsewidget.cpp.o -MF CMakeFiles/QtGui.dir/filebrowsewidget.cpp.o.d -o CMakeFiles/QtGui.dir/filebrowsewidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.cpp [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/fileformatdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/fileformatdialog.cpp.o -MF CMakeFiles/QtGui.dir/fileformatdialog.cpp.o.d -o CMakeFiles/QtGui.dir/fileformatdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/fileformatdialog.cpp [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/generichighlighter.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/generichighlighter.cpp.o -MF CMakeFiles/QtGui.dir/generichighlighter.cpp.o.d -o CMakeFiles/QtGui.dir/generichighlighter.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/generichighlighter.cpp [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/hydrogentools.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/hydrogentools.cpp.o -MF CMakeFiles/QtGui.dir/hydrogentools.cpp.o.d -o CMakeFiles/QtGui.dir/hydrogentools.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/hydrogentools.cpp [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/insertfragmentdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/insertfragmentdialog.cpp.o -MF CMakeFiles/QtGui.dir/insertfragmentdialog.cpp.o.d -o CMakeFiles/QtGui.dir/insertfragmentdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.cpp [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/interfacescript.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/interfacescript.cpp.o -MF CMakeFiles/QtGui.dir/interfacescript.cpp.o.d -o CMakeFiles/QtGui.dir/interfacescript.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/interfacescript.cpp [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/interfacewidget.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/interfacewidget.cpp.o -MF CMakeFiles/QtGui.dir/interfacewidget.cpp.o.d -o CMakeFiles/QtGui.dir/interfacewidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/interfacewidget.cpp [ 26%] Linking CXX shared library ../../lib/libAvogadroQuantumIO.so cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio && /usr/bin/cmake -E cmake_link_script CMakeFiles/QuantumIO.dir/link.txt --verbose=1 [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/jsonwidget.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/jsonwidget.cpp.o -MF CMakeFiles/QtGui.dir/jsonwidget.cpp.o.d -o CMakeFiles/QtGui.dir/jsonwidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.cpp [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/layermodel.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/layermodel.cpp.o -MF CMakeFiles/QtGui.dir/layermodel.cpp.o.d -o CMakeFiles/QtGui.dir/layermodel.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h: In constructor ‘Avogadro::QtGui::JsonWidget::JsonWidget(QWidget*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:136:12: warning: ‘Avogadro::QtGui::JsonWidget::m_centralWidget’ will be initialized after [-Wreorder] 136 | QWidget* m_centralWidget; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:133:8: warning: ‘bool Avogadro::QtGui::JsonWidget::m_empty’ [-Wreorder] 133 | bool m_empty; | ^~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.cpp:33:1: warning: when initialized here [-Wreorder] 33 | JsonWidget::JsonWidget(QWidget* parent_) | ^~~~~~~~~~ [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/rwlayermanager.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/rwlayermanager.cpp.o -MF CMakeFiles/QtGui.dir/rwlayermanager.cpp.o.d -o CMakeFiles/QtGui.dir/rwlayermanager.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.cpp [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/meshgenerator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/meshgenerator.cpp.o -MF CMakeFiles/QtGui.dir/meshgenerator.cpp.o.d -o CMakeFiles/QtGui.dir/meshgenerator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.cpp [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/molecule.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/molecule.cpp.o -MF CMakeFiles/QtGui.dir/molecule.cpp.o.d -o CMakeFiles/QtGui.dir/molecule.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.cpp [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/moleculemodel.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/moleculemodel.cpp.o -MF CMakeFiles/QtGui.dir/moleculemodel.cpp.o.d -o CMakeFiles/QtGui.dir/moleculemodel.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.cpp /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--dependency-file=CMakeFiles/QuantumIO.dir/link.d -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQuantumIO.so.1 -o ../../lib/libAvogadroQuantumIO.so.1.99.0 CMakeFiles/QuantumIO.dir/gamessus.cpp.o CMakeFiles/QuantumIO.dir/gaussianfchk.cpp.o CMakeFiles/QuantumIO.dir/gaussiancube.cpp.o CMakeFiles/QuantumIO.dir/genericoutput.cpp.o CMakeFiles/QuantumIO.dir/molden.cpp.o CMakeFiles/QuantumIO.dir/mopacaux.cpp.o CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o CMakeFiles/QuantumIO.dir/nwchemlog.cpp.o CMakeFiles/QuantumIO.dir/orca.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/lib: ../../lib/libAvogadroIO.so.1.99.0 ../../lib/libAvogadroCore.so.1.99.0 cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQuantumIO.so.1.99.0 ../../lib/libAvogadroQuantumIO.so.1 ../../lib/libAvogadroQuantumIO.so [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/multiviewwidget.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/multiviewwidget.cpp.o -MF CMakeFiles/QtGui.dir/multiviewwidget.cpp.o.d -o CMakeFiles/QtGui.dir/multiviewwidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 27%] Built target QuantumIO [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/periodictablescene_p.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/periodictablescene_p.cpp.o -MF CMakeFiles/QtGui.dir/periodictablescene_p.cpp.o.d -o CMakeFiles/QtGui.dir/periodictablescene_p.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/periodictablescene_p.cpp /usr/bin/gmake -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/command /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/command /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/command/CMakeFiles/qube.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 28%] Building CXX object avogadro/command/CMakeFiles/qube.dir/qube.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/command && /usr/bin/g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/command/CMakeFiles/qube.dir/qube.cpp.o -MF CMakeFiles/qube.dir/qube.cpp.o.d -o CMakeFiles/qube.dir/qube.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/command/qube.cpp [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/periodictableview.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/periodictableview.cpp.o -MF CMakeFiles/QtGui.dir/periodictableview.cpp.o.d -o CMakeFiles/QtGui.dir/periodictableview.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/periodictableview.cpp [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/pluginlayermanager.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/pluginlayermanager.cpp.o -MF CMakeFiles/QtGui.dir/pluginlayermanager.cpp.o.d -o CMakeFiles/QtGui.dir/pluginlayermanager.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pluginlayermanager.cpp [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/pythonscript.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/pythonscript.cpp.o -MF CMakeFiles/QtGui.dir/pythonscript.cpp.o.d -o CMakeFiles/QtGui.dir/pythonscript.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.cpp [ 28%] Linking CXX executable ../../bin/qube cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/command && /usr/bin/cmake -E cmake_link_script CMakeFiles/qube.dir/link.txt --verbose=1 [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/rwmolecule.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/rwmolecule.cpp.o -MF CMakeFiles/QtGui.dir/rwmolecule.cpp.o.d -o CMakeFiles/QtGui.dir/rwmolecule.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/qube.dir/link.d CMakeFiles/qube.dir/qube.cpp.o -o ../../bin/qube -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/lib ../../lib/libAvogadroQuantumIO.so.1.99.0 ../../lib/libAvogadroIO.so.1.99.0 ../../lib/libAvogadroCore.so.1.99.0 gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 29%] Built target qube [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/sceneplugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/scenepluginmodel.cpp.o -MF CMakeFiles/QtGui.dir/scenepluginmodel.cpp.o.d -o CMakeFiles/QtGui.dir/scenepluginmodel.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.cpp [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/scriptloader.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/scriptloader.cpp.o -MF CMakeFiles/QtGui.dir/scriptloader.cpp.o.d -o CMakeFiles/QtGui.dir/scriptloader.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scriptloader.cpp [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/sortfiltertreeproxymodel.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/sortfiltertreeproxymodel.cpp.o -MF CMakeFiles/QtGui.dir/sortfiltertreeproxymodel.cpp.o.d -o CMakeFiles/QtGui.dir/sortfiltertreeproxymodel.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.cpp [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/toolplugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/toolplugin.cpp.o -MF CMakeFiles/QtGui.dir/toolplugin.cpp.o.d -o CMakeFiles/QtGui.dir/toolplugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/toolplugin.cpp [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/utilities.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/utilities.cpp.o -MF CMakeFiles/QtGui.dir/utilities.cpp.o.d -o CMakeFiles/QtGui.dir/utilities.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/utilities.cpp [ 30%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/viewfactory.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/viewfactory.cpp.o -MF CMakeFiles/QtGui.dir/viewfactory.cpp.o.d -o CMakeFiles/QtGui.dir/viewfactory.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/viewfactory.cpp [ 30%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/qrc_qtgui.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/qrc_qtgui.cpp.o -MF CMakeFiles/QtGui.dir/qrc_qtgui.cpp.o.d -o CMakeFiles/QtGui.dir/qrc_qtgui.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/qrc_qtgui.cpp [ 30%] Linking CXX shared library ../../lib/libAvogadroQtGui.so cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/cmake -E cmake_link_script CMakeFiles/QtGui.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -Wl,--dependency-file=CMakeFiles/QtGui.dir/link.d -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQtGui.so.1 -o ../../lib/libAvogadroQtGui.so.1.99.0 CMakeFiles/QtGui.dir/QtGui_autogen/mocs_compilation.cpp.o CMakeFiles/QtGui.dir/backgroundfileformat.cpp.o CMakeFiles/QtGui.dir/colorbutton.cpp.o CMakeFiles/QtGui.dir/containerwidget.cpp.o CMakeFiles/QtGui.dir/customelementdialog.cpp.o CMakeFiles/QtGui.dir/elementdetail_p.cpp.o CMakeFiles/QtGui.dir/elementitem_p.cpp.o CMakeFiles/QtGui.dir/elementtranslator.cpp.o CMakeFiles/QtGui.dir/extensionplugin.cpp.o CMakeFiles/QtGui.dir/filebrowsewidget.cpp.o CMakeFiles/QtGui.dir/fileformatdialog.cpp.o CMakeFiles/QtGui.dir/generichighlighter.cpp.o CMakeFiles/QtGui.dir/hydrogentools.cpp.o CMakeFiles/QtGui.dir/insertfragmentdialog.cpp.o CMakeFiles/QtGui.dir/interfacescript.cpp.o CMakeFiles/QtGui.dir/interfacewidget.cpp.o CMakeFiles/QtGui.dir/jsonwidget.cpp.o CMakeFiles/QtGui.dir/layermodel.cpp.o CMakeFiles/QtGui.dir/rwlayermanager.cpp.o CMakeFiles/QtGui.dir/meshgenerator.cpp.o CMakeFiles/QtGui.dir/molecule.cpp.o CMakeFiles/QtGui.dir/moleculemodel.cpp.o CMakeFiles/QtGui.dir/multiviewwidget.cpp.o CMakeFiles/QtGui.dir/periodictablescene_p.cpp.o CMakeFiles/QtGui.dir/periodictableview.cpp.o CMakeFiles/QtGui.dir/pluginlayermanager.cpp.o CMakeFiles/QtGui.dir/pythonscript.cpp.o CMakeFiles/QtGui.dir/rwmolecule.cpp.o CMakeFiles/QtGui.dir/sceneplugin.cpp.o CMakeFiles/QtGui.dir/scenepluginmodel.cpp.o CMakeFiles/QtGui.dir/scriptloader.cpp.o CMakeFiles/QtGui.dir/sortfiltertreeproxymodel.cpp.o CMakeFiles/QtGui.dir/toolplugin.cpp.o CMakeFiles/QtGui.dir/utilities.cpp.o CMakeFiles/QtGui.dir/viewfactory.cpp.o CMakeFiles/QtGui.dir/qrc_qtgui.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/lib: ../../lib/libAvogadroIO.so.1.99.0 ../../lib/libAvogadroCore.so.1.99.0 /usr/lib/libQt5Widgets.so.5.15.16 /usr/lib/libQt5Gui.so.5.15.16 /usr/lib/libQt5Core.so.5.15.16 cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtGui.so.1.99.0 ../../lib/libAvogadroQtGui.so.1 ../../lib/libAvogadroQtGui.so gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 30%] Built target QtGui /usr/bin/gmake -f avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen_timestamp_deps.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen_timestamp_deps.dir/depend /usr/bin/gmake -f avogadro/molequeue/CMakeFiles/MoleQueue_autogen_timestamp_deps.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/CMakeFiles/MoleQueue_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen_timestamp_deps.dir/depend /usr/bin/gmake -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen_timestamp_deps.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen_timestamp_deps.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/molequeue/CMakeFiles/MoleQueue_autogen_timestamp_deps.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue_autogen_timestamp_deps.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen_timestamp_deps.dir/build /usr/bin/gmake -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/molequeue/CMakeFiles/MoleQueue_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen_timestamp_deps.dir/build'. gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 30%] Built target QtOpenGL_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen_timestamp_deps.dir/depend [ 30%] Built target MoleQueue_autogen_timestamp_deps gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/depend [ 30%] Built target QTAIMScenePlugin_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/depend [ 30%] Built target ThreeDMol_autogen_timestamp_deps gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/depend cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen_timestamp_deps.dir/build /usr/bin/gmake -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen_timestamp_deps.dir/build'. gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 30%] Built target Bonding_autogen_timestamp_deps [ 30%] Built target ApplyColors_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/depend /usr/bin/gmake -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" [ 30%] Built target Centroid_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" [ 30%] Built target Cartoons_autogen_timestamp_deps gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/build gmake[2]: Nothing to be done for 'avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 30%] Built target ConfigurePython_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" [ 30%] Built target CopyPaste_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" [ 30%] Built target Crystal_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/depend [ 30%] Built target CrystalScene_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/build cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/build [ 30%] Built target CustomElements_autogen_timestamp_deps gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/depend gmake[2]: Nothing to be done for 'avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 30%] Built target FetchPDB_autogen_timestamp_deps gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" [ 30%] Built target Hydrogens_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" [ 30%] Built target ImportPQR_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/depend gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/build /usr/bin/gmake -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 30%] Built target NucleicInput_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/build /usr/bin/gmake -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" [ 30%] Built target Label_autogen_timestamp_deps [ 30%] Built target LammpsInput_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/depend /usr/bin/gmake -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 30%] Built target LineFormatInput_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/build /usr/bin/gmake -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ply /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/build /usr/bin/gmake -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 30%] Built target NetworkDatabases_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/depend gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/build cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 30%] Built target OpenMMInput_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/depend [ 30%] Built target OpenBabel_autogen_timestamp_deps gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/build [ 30%] Built target PLY_autogen_timestamp_deps gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/build [ 30%] Built target POVRay_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 30%] Built target PropertyTables_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/depend [ 30%] Built target Select_autogen_timestamp_deps gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 30%] Built target SpaceGroup_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/build [ 30%] Built target Vibrations_autogen_timestamp_deps gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/depend /usr/bin/gmake -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/build'. gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 30%] Built target CoordinateEditor_autogen_timestamp_deps gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/build /usr/bin/gmake -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/depend [ 30%] Built target VRML_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" [ 30%] Built target Forcefield_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 30%] Built target InsertFragment_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/build /usr/bin/gmake -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/depend gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 30%] Built target MolecularProperties_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/depend gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/build [ 30%] Built target commands_autogen_timestamp_deps gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" [ 30%] Built target ScriptCharges_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 30%] Built target ScriptFileFormats_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/build /usr/bin/gmake -f avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 30%] Built target PluginDownloader_autogen_timestamp_deps gmake[2]: Nothing to be done for 'avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/depend [ 30%] Built target BallStick_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/depend gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Nothing to be done for 'avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 30%] Built target CloseContacts_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/build [ 30%] Built target Force_autogen_timestamp_deps gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/depend gmake[2]: Nothing to be done for 'avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 30%] Built target Licorice_autogen_timestamp_deps gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/depend /usr/bin/gmake -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" [ 30%] Built target Meshes_autogen_timestamp_deps gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" [ 30%] Built target NonCovalent_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 30%] Built target VanDerWaals_autogen_timestamp_deps gmake[2]: Nothing to be done for 'avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/depend gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 30%] Built target Wireframe_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 30%] Built target QTAIMExtension_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/depend [ 30%] Automatic MOC for target QtOpenGL cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/AutogenInfo.json Release gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 31%] Automatic MOC for target MoleQueue cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtopengl/QtOpenGL_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build [ 31%] Automatic MOC for target QTAIMScenePlugin gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Refreshing parse cache because it doesn't exist. [ 31%] Automatic MOC for target ThreeDMol cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenInfo.json Release AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtopengl/activeobjects.h" AutoGen: Parsing "SRC:/avogadro/qtopengl/glwidget.h" AutoGen: Parsing "SRC:/avogadro/qtopengl/qttextrenderstrategy.h" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtopengl/avogadroqtopenglexport.h" AutoGen: Parsing "SRC:/avogadro/qtopengl/activeobjects.cpp" AutoGen: Parsing "SRC:/avogadro/qtopengl/glwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtopengl/qttextrenderstrategy.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp", because it doesn't exist, from "SRC:/avogadro/qtopengl/activeobjects.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl/QtOpenGL_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl/activeobjects.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtopengl/glwidget.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl/QtOpenGL_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl/glwidget.h AutoGen: Parsing "SRC:/avogadro/molequeue/batchjob.h" AutoGen: Parsing "SRC:/avogadro/molequeue/client/client.h" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jobobject.h" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jsonrpcclient.h" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgenerator.h" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratordialog.h" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratorwidget.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuemanager.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuequeuelistmodel.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuewidget.h" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/molequeue/avogadromolequeueexport.h" AutoGen: Parsing "SRC:/avogadro/molequeue/batchjob.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/client/client.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jobobject.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jsonrpcclient.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgenerator.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratordialog.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuedialog.h" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratorwidget.cpp" AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuedialog.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuemanager.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuequeuelistmodel.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuewidget.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/batchjob.h" /usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.h AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimengine.h" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimengine.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_client.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/client/client.h" /usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_client.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/qtaim/qtaimengine.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimengine.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmol.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmol.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/3dmol/3dmol.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol/3dmol.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol/3dmoldialog.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/client/jsonrpcclient.h" /usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jsonrpcclient.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 31%] Built target QTAIMScenePlugin_autogen /usr/bin/gmake -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 32%] Automatic MOC for target ApplyColors cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/applycolors/applycolors.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/applycolors/applycolors.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/applycolors/applycolors.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors/applycolors.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_client.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgenerator.h" /usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgenerator.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgeneratordialog.h" /usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratordialog.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColors_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColors_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColors_autogen/timestamp [ 32%] Built target ThreeDMol_autogen gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/DependInfo.cmake "--color=" [ 32%] Built target ApplyColors_autogen /usr/bin/gmake -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 32%] Automatic MOC for target Cartoons cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenInfo.json Release [ 32%] Automatic MOC for target Bonding cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgeneratorwidget.h" /usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratorwidget.h AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/cartoons/cartoons.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/cartoons/cartoons.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/bonding/bonding.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/bonding/bonding.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/bonding/BondingPlugin.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/bonding/bonding.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding/bonding.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cartoons/cartoons.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons/cartoons.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/bonding/BondingPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding/BondingPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuedialog.h" /usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuedialog.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtopengl/QtOpenGL_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtopengl/QtOpenGL_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl/QtOpenGL_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 32%] Built target QtOpenGL_autogen /usr/bin/gmake -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 32%] Automatic MOC for target Centroid cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/centroid/centroid.h" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/centroid/CentroidPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/centroid/centroid.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/EWIEGA46WW/moc_centroid.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/centroid/centroid.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/EWIEGA46WW/moc_centroid.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid/centroid.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/include/CentroidPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/centroid/CentroidPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/include/CentroidPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid/CentroidPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuemanager.h" /usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuemanager.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuequeuelistmodel.h" /usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/bonding/Bonding_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/bonding/Bonding_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding/Bonding_autogen/timestamp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 32%] Built target Bonding_autogen gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/include/CentroidPlugin.moc.d" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/DependInfo.cmake "--color=" [ 32%] Built target Cartoons_autogen /usr/bin/gmake -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/depend gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 32%] Automatic MOC for target ConfigurePython cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/AutogenInfo.json Release gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 32%] Automatic MOC for target CopyPaste cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/EWIEGA46WW/moc_centroid.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/mocs_compilation.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuewidget.h" /usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuewidget.h AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/deps" AutoGen: Parsing "SRC:/avogadro/qtplugins/configurepython/condadialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/configurepython/configurepython.h" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/ParseCache.txt" AutoGen: Parsing "SRC:/avogadro/qtplugins/configurepython/condadialog.cpp" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/AutogenUsed.txt" AutoGen: Parsing "SRC:/avogadro/qtplugins/configurepython/configurepythondialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/configurepython/configurepythondialog.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePythonPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/configurepython/configurepython.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_condadialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/configurepython/condadialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_condadialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/condadialog.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_configurepython.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/configurepython/configurepython.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_configurepython.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/configurepython.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/timestamp AutoGen: Parsing "SRC:/avogadro/qtplugins/copypaste/copypaste.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/copypaste/copypaste.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/copypaste/copypaste.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste/copypaste.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 32%] Built target Centroid_autogen /usr/bin/gmake -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 32%] Automatic MOC for target Crystal cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp.d" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystal.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/supercelldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/unitcelldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystal.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/supercelldialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/unitcelldialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/CrystalPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/crystal.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/crystal.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/importcrystaldialog.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/supercelldialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/supercelldialog.h [ 32%] Built target CopyPaste_autogen /usr/bin/gmake -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 32%] Automatic MOC for target CrystalScene cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystalscene.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystalscene.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/crystalscene.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/crystalscene.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_configurepython.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_configurepythondialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/configurepython/configurepythondialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_configurepythondialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/configurepythondialog.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_condadialog.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/include/ConfigurePythonPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePythonPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/include/ConfigurePythonPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePythonPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 32%] Built target MoleQueue_autogen /usr/bin/gmake -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 32%] Automatic MOC for target CustomElements cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenInfo.json Release AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/unitcelldialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/unitcelldialog.h AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/customelements/customelements.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/customelements/customelements.h" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/customelements/customelements.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/customelements/customelements.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_configurepythondialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/volumescalingdialog.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/include/ConfigurePythonPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 32%] Built target ConfigurePython_autogen /usr/bin/gmake -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 32%] Automatic MOC for target FetchPDB cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb/fetchpdb.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 32%] Built target CustomElements_autogen /usr/bin/gmake -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp.d" [ 32%] Automatic MOC for target Hydrogens cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/CrystalPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/CrystalPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp.d" AutoGen: Parsing "SRC:/avogadro/qtplugins/hydrogens/hydrogens.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/hydrogens/hydrogens.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/hydrogens/hydrogens.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens/hydrogens.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 32%] Built target FetchPDB_autogen /usr/bin/gmake -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 32%] Automatic MOC for target ImportPQR cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenInfo.json Release AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc.d" AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/ParseCache.txt" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/importpqr.h" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenUsed.txt" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrrequest.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/importpqr.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrrequest.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrwidget.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/pqrrequest.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr/pqrrequest.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/importpqr.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr/importpqr.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/timestamp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc.d" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 32%] Built target CrystalScene_autogen /usr/bin/gmake -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp.d" [ 32%] Automatic MOC for target NucleicInput cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenInfo.json Release AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/timestamp AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc.d" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertdna/insertdna.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertdna/insertdna.cpp" [ 32%] Built target Hydrogens_autogen AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertdna/insertdna.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna/insertdna.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/ParseCache.txt" /usr/bin/gmake -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/depend AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/timestamp gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 32%] Built target Crystal_autogen /usr/bin/gmake -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 33%] Automatic MOC for target Label cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenInfo.json Release cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/DependInfo.cmake "--color=" AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 33%] Automatic MOC for target LammpsInput cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenInfo.json Release AutoGen: Parsing "SRC:/avogadro/qtplugins/label/label.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/label/label.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/label/LabelPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/label/label.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label/label.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/label/LabelPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/LabelPlugin.cpp AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinput.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/pqrwidget.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr/pqrwidget.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 33%] Built target NucleicInput_autogen /usr/bin/gmake -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 34%] Automatic MOC for target LineFormatInput cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput/lineformatinput.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 34%] Built target ImportPQR_autogen /usr/bin/gmake -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp.d" [ 35%] Automatic MOC for target NetworkDatabases cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenInfo.json Release AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp.d" AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.h" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases/networkdatabases.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 35%] Built target LammpsInput_autogen /usr/bin/gmake -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/label/Label_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/label/Label_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenUsed.txt" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/Label_autogen/timestamp [ 35%] Automatic MOC for target OpenBabel gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenInfo.json Release [ 35%] Built target Label_autogen /usr/bin/gmake -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoGen: Refreshing parse cache because it doesn't exist. cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 35%] Automatic MOC for target OpenMMInput AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/conformersearchdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obcharges.h" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenInfo.json Release AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obfileformat.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obprocess.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/openbabel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/conformersearchdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obcharges.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obfileformat.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obprocess.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/openbabel.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_conformersearchdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/conformersearchdialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_conformersearchdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/conformersearchdialog.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obforcefielddialog.h AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/mocs_compilation.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput/openmminputdialog.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openmminput/openmminput.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput/openmminput.h AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp.d" [ 35%] Built target LineFormatInput_autogen /usr/bin/gmake -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ply /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/ParseCache.txt" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/timestamp gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 35%] Automatic MOC for target PLY cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/AutogenInfo.json Release gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 35%] Built target NetworkDatabases_autogen /usr/bin/gmake -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/DependInfo.cmake "--color=" AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 36%] Automatic MOC for target POVRay cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/avogadro/qtplugins/ply/ply.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/ply/ply.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/ply/PLYPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/include/PLYPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/ply/PLYPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/include/PLYPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply/PLYPlugin.cpp AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/EWIEGA46WW/moc_ply.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/ply/ply.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/EWIEGA46WW/moc_ply.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ply/ply.h AutoGen: Parsing "SRC:/avogadro/qtplugins/povray/povray.h" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/povray/POVRayPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/povray/povray.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/povray/POVRayPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray/POVRayPlugin.cpp AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/povray/povray.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray/povray.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obprocess.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obprocess.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_conformersearchdialog.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/openbabel.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/openbabel.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/include/PLYPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/EWIEGA46WW/moc_ply.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/timestamp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp.d" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/ParseCache.txt" [ 36%] Built target PLY_autogen AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenUsed.txt" /usr/bin/gmake -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/depend cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/timestamp gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 36%] Automatic MOC for target PropertyTables [ 36%] Built target POVRay_autogen /usr/bin/gmake -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenInfo.json Release cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/deps" AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp.d" /usr/bin/gmake -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obcharges.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.cpp gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 36%] Automatic MOC for target Select cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenInfo.json Release AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertymodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertytables.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertyview.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertymodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertytables.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertyview.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertymodel.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertymodel.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertytables.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertytables.h gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include [ 36%] Built target OpenMMInput_autogen /usr/bin/gmake -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obfileformat.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obfileformat.cpp AutoGen: Parsing "SRC:/avogadro/qtplugins/select/select.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/select/select.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/select/SelectPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/select/select.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select/select.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/select/SelectPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select/SelectPlugin.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 36%] Automatic MOC for target SpaceGroup cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/spacegroup/spacegroup.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/spacegroup/spacegroup.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/spacegroup/spacegroup.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup/spacegroup.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertyview.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp [ 36%] Built target SpaceGroup_autogen /usr/bin/gmake -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 36%] Automatic MOC for target Vibrations cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/vibrations/vibrationdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vibrations/vibrationmodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vibrations/vibrations.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vibrations/vibrationdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/vibrations/vibrationmodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/vibrations/vibrations.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/vibrations/VibrationsPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/EWIEGA46WW/moc_vibrationdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vibrations/vibrationdialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/EWIEGA46WW/moc_vibrationdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations/vibrationdialog.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/EWIEGA46WW/moc_vibrations.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vibrations/vibrations.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/EWIEGA46WW/moc_vibrations.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations/vibrations.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/select/Select_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/select/Select_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select/Select_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 36%] Built target Select_autogen /usr/bin/gmake -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc.d" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 36%] Automatic MOC for target VRML cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/EWIEGA46WW/moc_vibrations.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/include/VibrationsPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/vibrations/VibrationsPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/include/VibrationsPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/VibrationsPlugin.cpp AutoGen: Parsing "SRC:/avogadro/qtplugins/vrml/vrml.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vrml/vrml.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/vrml/VRMLPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vrml/vrml.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml/vrml.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/vrml/VRMLPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml/VRMLPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 36%] Built target OpenBabel_autogen /usr/bin/gmake -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 36%] Automatic MOC for target CoordinateEditor cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditor.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h [ 36%] Built target PropertyTables_autogen /usr/bin/gmake -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 36%] Automatic MOC for target Forcefield cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/AutogenInfo.json Release AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/EWIEGA46WW/moc_vibrationdialog.cpp.d" AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/openbabel3 -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/forcefielddialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/obenergy.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/obmmenergy.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/scriptenergy.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/forcefield.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/forcefielddialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/obenergy.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/obmmenergy.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/scriptenergy.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/forcefield/ForcefieldPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/forcefield.h" AutoMoc warning --------------- "SRC:/avogadro/qtplugins/forcefield/obenergy.cpp" includes the moc file "obenergy.moc", but does not contain a Q_OBJECT, Q_GADGET, Q_NAMESPACE or Q_NAMESPACE_EXPORT macro. AutoMoc warning --------------- "SRC:/avogadro/qtplugins/forcefield/obmmenergy.cpp" includes the moc file "obmmenergy.moc", but does not contain a Q_OBJECT, Q_GADGET, Q_NAMESPACE or Q_NAMESPACE_EXPORT macro. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefield.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/forcefield/forcefield.h" /usr/lib/qt5/bin/moc -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/openbabel3 -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefield.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefielddialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/forcefield/forcefielddialog.h" /usr/lib/qt5/bin/moc -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/openbabel3 -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefielddialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefielddialog.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/include/VibrationsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/AutogenUsed.txt" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/timestamp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 36%] Built target Vibrations_autogen /usr/bin/gmake -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/depend gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build [ 36%] Built target VRML_autogen /usr/bin/gmake -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/DependInfo.cmake "--color=" [ 36%] Automatic MOC for target InsertFragment cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenInfo.json Release gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefield.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/obenergy.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/forcefield/obenergy.cpp" /usr/lib/qt5/bin/moc -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/openbabel3 -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/obenergy.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.cpp AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp [ 37%] Automatic MOC for target MolecularProperties cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragment.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragment.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertfragment/insertfragment.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties/molecularproperties.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefielddialog.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/obmmenergy.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/forcefield/obmmenergy.cpp" /usr/lib/qt5/bin/moc -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/openbabel3 -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/obmmenergy.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp [ 37%] Built target InsertFragment_autogen /usr/bin/gmake -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/depend AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenUsed.txt" gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/DependInfo.cmake "--color=" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp.d" gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 37%] Built target CoordinateEditor_autogen /usr/bin/gmake -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/DependInfo.cmake "--color=" [ 37%] Automatic MOC for target commands gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenInfo.json Release gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 37%] Automatic MOC for target ScriptCharges cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/commandscripts/command.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/commandscripts/command.h" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/commandscripts/command.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts/command.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptchargemodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptcharges.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 37%] Built target MolecularProperties_autogen /usr/bin/gmake -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 37%] Automatic MOC for target ScriptFileFormats cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/fileformatscript.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/fileformatscript.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats/scriptfileformats.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/timestamp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/deps" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/ParseCache.txt" AutoMoc: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.cpp:0: Note: No relevant classes found. No output generated. AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/obenergy.moc.d" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenUsed.txt" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/ForcefieldPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/forcefield/ForcefieldPlugin.cpp" /usr/lib/qt5/bin/moc -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/openbabel3 -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/ForcefieldPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/ForcefieldPlugin.cpp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/timestamp [ 37%] Built target commands_autogen gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/DependInfo.cmake "--color=" [ 37%] Built target ScriptCharges_autogen /usr/bin/gmake -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build [ 37%] Automatic MOC for target PluginDownloader gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenInfo.json Release [ 37%] Automatic MOC for target BallStick cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp.d" AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/zipextracter.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/zipextracter.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.h" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/downloaderwidget.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/plugindownloader.h AutoGen: Parsing "SRC:/avogadro/qtplugins/ballandstick/ballandstick.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/ballandstick/ballandstick.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/ballandstick/ballandstick.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick/ballandstick.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp AutoMoc: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp:0: Note: No relevant classes found. No output generated. AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/obmmenergy.moc.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 37%] Built target ScriptFileFormats_autogen /usr/bin/gmake -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/ForcefieldPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 37%] Automatic MOC for target CloseContacts cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include [ 37%] Built target Forcefield_autogen /usr/bin/gmake -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoGen: Parsing "SRC:/avogadro/qtplugins/closecontacts/closecontacts.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/closecontacts/closecontacts.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/closecontacts/closecontacts.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts/closecontacts.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp [ 37%] Automatic MOC for target Force cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc.d" AutoGen: Parsing "SRC:/avogadro/qtplugins/force/force.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/force/force.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/force/ForcePlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/force/force.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force/force.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/force/ForcePlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force/ForcePlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/ballandstick/BallStick_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/ballandstick/BallStick_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick/BallStick_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 37%] Built target BallStick_autogen /usr/bin/gmake -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 37%] Automatic MOC for target Licorice cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc.d" AutoGen: Parsing "SRC:/avogadro/qtplugins/licorice/licorice.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/licorice/licorice.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/licorice/LicoricePlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/licorice/LicoricePlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice/LicoricePlugin.cpp AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/licorice/licorice.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice/licorice.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/force/Force_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/force/Force_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force/Force_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 37%] Built target Force_autogen /usr/bin/gmake -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc.d" [ 37%] Automatic MOC for target Meshes AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenInfo.json Release cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/timestamp AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 37%] Built target PluginDownloader_autogen /usr/bin/gmake -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/depend AutoGen: Parsing "SRC:/avogadro/qtplugins/meshes/meshes.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/meshes/meshes.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/meshes/MeshesPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/meshes/meshes.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes/meshes.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/meshes/MeshesPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes/MeshesPlugin.cpp gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 37%] Automatic MOC for target NonCovalent cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/noncovalent/noncovalent.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/noncovalent/noncovalent.h" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/noncovalent/noncovalent.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent/noncovalent.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 37%] Built target Licorice_autogen /usr/bin/gmake -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/ParseCache.txt" [ 37%] Automatic MOC for target VanDerWaals AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenInfo.json Release cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/timestamp AutoGen: Refreshing parse cache because it doesn't exist. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include [ 37%] Built target CloseContacts_autogen /usr/bin/gmake -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/DependInfo.cmake "--color=" AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals/vanderwaals.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 37%] Automatic MOC for target Wireframe cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/wireframe/wireframe.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/wireframe/wireframe.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/wireframe/WireframePlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/wireframe/wireframe.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe/wireframe.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/wireframe/WireframePlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe/WireframePlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp.d" [ 37%] Built target VanDerWaals_autogen /usr/bin/gmake -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenUsed.txt" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/timestamp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc.d" [ 37%] Automatic MOC for target QTAIMExtension gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/AutogenInfo.json Release [ 37%] Built target Wireframe_autogen AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include /usr/bin/gmake -f avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcubature.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimextension.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimmathutilities.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimodeintegrator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunction.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcubature.cpp" /usr/bin/gmake -f avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimextension.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimmathutilities.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/qtaim/qtaimextension.h" /usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimextension.h gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp [ 37%] Building CXX object avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/QtOpenGL_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl/QtOpenGL_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/QtOpenGL_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QtOpenGL.dir/QtOpenGL_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QtOpenGL.dir/QtOpenGL_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl/QtOpenGL_autogen/mocs_compilation.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/timestamp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/deps" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/timestamp [ 37%] Built target Meshes_autogen gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 37%] Built target NonCovalent_autogen [ 38%] Building CXX object avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/glwidget.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl/QtOpenGL_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/glwidget.cpp.o -MF CMakeFiles/QtOpenGL.dir/glwidget.cpp.o.d -o CMakeFiles/QtOpenGL.dir/glwidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl/glwidget.cpp [ 38%] Building CXX object avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/activeobjects.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl/QtOpenGL_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/activeobjects.cpp.o -MF CMakeFiles/QtOpenGL.dir/activeobjects.cpp.o.d -o CMakeFiles/QtOpenGL.dir/activeobjects.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl/activeobjects.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 38%] Built target QTAIMExtension_autogen [ 38%] Building CXX object avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/qttextrenderstrategy.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl/QtOpenGL_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/qttextrenderstrategy.cpp.o -MF CMakeFiles/QtOpenGL.dir/qttextrenderstrategy.cpp.o.d -o CMakeFiles/QtOpenGL.dir/qttextrenderstrategy.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl/qttextrenderstrategy.cpp /usr/bin/gmake -f avogadro/molequeue/CMakeFiles/MoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 38%] Generating ui_molequeuewidget.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/ui_molequeuewidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuewidget.ui [ 38%] Generating ui_inputgeneratordialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/ui_inputgeneratordialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratordialog.ui [ 38%] Generating ui_inputgeneratorwidget.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/ui_inputgeneratorwidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratorwidget.ui [ 38%] Generating ui_molequeuedialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/ui_molequeuedialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuedialog.ui cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/CMakeFiles/MoleQueue.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/molequeue/CMakeFiles/MoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 39%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o -MF CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/mocs_compilation.cpp [ 39%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/batchjob.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/batchjob.cpp.o -MF CMakeFiles/MoleQueue.dir/batchjob.cpp.o.d -o CMakeFiles/MoleQueue.dir/batchjob.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.cpp /usr/bin/gmake -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 39%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/mocs_compilation.cpp [ 39%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o -MF CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o.d -o CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimengine.cpp [ 39%] Linking CXX shared library ../../lib/libAvogadroQtOpenGL.so cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl && /usr/bin/cmake -E cmake_link_script CMakeFiles/QtOpenGL.dir/link.txt --verbose=1 [ 39%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o -MF CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o.d -o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp [ 39%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/inputgenerator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/inputgenerator.cpp.o -MF CMakeFiles/MoleQueue.dir/inputgenerator.cpp.o.d -o CMakeFiles/MoleQueue.dir/inputgenerator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgenerator.cpp /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -Wl,--dependency-file=CMakeFiles/QtOpenGL.dir/link.d -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQtOpenGL.so.1 -o ../../lib/libAvogadroQtOpenGL.so.1.99.0 CMakeFiles/QtOpenGL.dir/QtOpenGL_autogen/mocs_compilation.cpp.o CMakeFiles/QtOpenGL.dir/activeobjects.cpp.o CMakeFiles/QtOpenGL.dir/glwidget.cpp.o CMakeFiles/QtOpenGL.dir/qttextrenderstrategy.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/lib: ../../lib/libAvogadroRendering.so.1.99.0 ../../lib/libAvogadroQtGui.so.1.99.0 ../../lib/libAvogadroIO.so.1.99.0 ../../lib/libAvogadroCore.so.1.99.0 /usr/lib/libQt5Widgets.so.5.15.16 /usr/lib/libQt5Gui.so.5.15.16 /usr/lib/libQt5Core.so.5.15.16 /usr/lib/libQt5Widgets.so.5.15.16 /usr/lib/libQt5Gui.so.5.15.16 /usr/lib/libQt5Core.so.5.15.16 cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtOpenGL.so.1.99.0 ../../lib/libAvogadroQtOpenGL.so.1 ../../lib/libAvogadroQtOpenGL.so gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 39%] Built target QtOpenGL [ 39%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/inputgeneratordialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/inputgeneratordialog.cpp.o -MF CMakeFiles/MoleQueue.dir/inputgeneratordialog.cpp.o.d -o CMakeFiles/MoleQueue.dir/inputgeneratordialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratordialog.cpp [ 39%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/inputgeneratorwidget.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/inputgeneratorwidget.cpp.o -MF CMakeFiles/MoleQueue.dir/inputgeneratorwidget.cpp.o.d -o CMakeFiles/MoleQueue.dir/inputgeneratorwidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratorwidget.cpp [ 40%] Linking CXX static library ../../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim && /usr/bin/cmake -P CMakeFiles/QTAIMScenePlugin.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/QTAIMScenePlugin.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 40%] Built target QTAIMScenePlugin [ 40%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o -MF CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o.d -o CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuedialog.cpp /usr/bin/gmake -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 40%] Generating ui_3dmoldialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/ui_3dmoldialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol/3dmoldialog.ui cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 40%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o -MF 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmol.cpp.o -MF CMakeFiles/ThreeDMol.dir/3dmol.cpp.o.d -o CMakeFiles/ThreeDMol.dir/3dmol.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol/3dmol.cpp /usr/bin/gmake -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 41%] Generating ui_chargedialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors/ui_chargedialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors/chargedialog.ui cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 41%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColors_autogen/mocs_compilation.cpp [ 41%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o -MF CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o.d -o CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol/3dmoldialog.cpp [ 41%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/applycolors.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/applycolors.cpp.o -MF CMakeFiles/ApplyColors.dir/applycolors.cpp.o.d -o CMakeFiles/ApplyColors.dir/applycolors.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors/applycolors.cpp [ 41%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o -MF CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o.d -o CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp [ 41%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o -MF CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o.d -o CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuemanager.cpp [ 41%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o -MF CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o.d -o CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp [ 42%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o -MF CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o.d -o CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.cpp /usr/bin/gmake -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 42%] Built target AlignTool_autogen_timestamp_deps [ 42%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuewidget.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuewidget.cpp.o -MF CMakeFiles/MoleQueue.dir/molequeuewidget.cpp.o.d -o CMakeFiles/MoleQueue.dir/molequeuewidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuewidget.cpp [ 42%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ThreeDMol.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol && /usr/bin/cmake -P CMakeFiles/ThreeDMol.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_link_script CMakeFiles/ThreeDMol.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ThreeDMol.a CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o CMakeFiles/ThreeDMol.dir/3dmol.cpp.o CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ThreeDMol.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 42%] Built target ThreeDMol [ 42%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/client.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/client.cpp.o -MF CMakeFiles/MoleQueue.dir/client/client.cpp.o.d -o CMakeFiles/MoleQueue.dir/client/client.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/client.cpp /usr/bin/gmake -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 42%] Built target BondCentric_autogen_timestamp_deps [ 42%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/jobobject.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/jobobject.cpp.o -MF CMakeFiles/MoleQueue.dir/client/jobobject.cpp.o.d -o CMakeFiles/MoleQueue.dir/client/jobobject.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jobobject.cpp /usr/bin/gmake -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 43%] Generating ui_bondingdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding/ui_bondingdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding/bondingdialog.ui cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 43%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding/Bonding_autogen/mocs_compilation.cpp [ 43%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ApplyColors.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors && /usr/bin/cmake -P CMakeFiles/ApplyColors.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_link_script CMakeFiles/ApplyColors.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ApplyColors.a CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o CMakeFiles/ApplyColors.dir/applycolors.cpp.o CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ApplyColors.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 43%] Built target ApplyColors [ 43%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/bonding.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/bonding.cpp.o -MF CMakeFiles/Bonding.dir/bonding.cpp.o.d -o CMakeFiles/Bonding.dir/bonding.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding/bonding.cpp [ 43%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/BondingPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/BondingPlugin.cpp.o -MF CMakeFiles/Bonding.dir/BondingPlugin.cpp.o.d -o CMakeFiles/Bonding.dir/BondingPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding/BondingPlugin.cpp /usr/bin/gmake -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 44%] Building CXX object avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o -MF CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o.d -o CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jsonrpcclient.cpp /usr/bin/gmake -f avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/build.make 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-f avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 44%] Building CXX object avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/Centroid_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/Centroid_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Centroid.dir/Centroid_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Centroid.dir/Centroid_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/mocs_compilation.cpp [ 44%] Building CXX object avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/cartoons.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/cartoons.cpp.o -MF CMakeFiles/Cartoons.dir/cartoons.cpp.o.d -o CMakeFiles/Cartoons.dir/cartoons.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons/cartoons.cpp [ 45%] Building CXX object avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/centroid.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/centroid.cpp.o -MF CMakeFiles/Centroid.dir/centroid.cpp.o.d -o CMakeFiles/Centroid.dir/centroid.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid/centroid.cpp [ 45%] Linking CXX shared library ../../lib/libAvogadroMoleQueue.so cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/bin/cmake -E cmake_link_script CMakeFiles/MoleQueue.dir/link.txt --verbose=1 [ 45%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Bonding.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding && /usr/bin/cmake -P CMakeFiles/Bonding.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_link_script CMakeFiles/Bonding.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Bonding.a CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o CMakeFiles/Bonding.dir/bonding.cpp.o CMakeFiles/Bonding.dir/BondingPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Bonding.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 45%] Built target Bonding [ 45%] Building CXX object avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/CentroidPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/CentroidPlugin.cpp.o -MF CMakeFiles/Centroid.dir/CentroidPlugin.cpp.o.d -o CMakeFiles/Centroid.dir/CentroidPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid/CentroidPlugin.cpp [ 45%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Centroid.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid && /usr/bin/cmake -P CMakeFiles/Centroid.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid && /usr/bin/cmake -E cmake_link_script CMakeFiles/Centroid.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Centroid.a CMakeFiles/Centroid.dir/Centroid_autogen/mocs_compilation.cpp.o CMakeFiles/Centroid.dir/centroid.cpp.o CMakeFiles/Centroid.dir/CentroidPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Centroid.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 45%] Built target Centroid [ 45%] Building CXX object avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons 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/usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o -MF CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o.d -o CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp /usr/bin/gmake -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 45%] Generating ui_configurepythondialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/ui_configurepythondialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/configurepythondialog.ui [ 45%] Generating ui_condadialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/ui_condadialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/condadialog.ui cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 45%] Building CXX object avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/ConfigurePython_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/ConfigurePython_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ConfigurePython.dir/ConfigurePython_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ConfigurePython.dir/ConfigurePython_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/mocs_compilation.cpp /usr/bin/gmake -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 46%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/mocs_compilation.cpp /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -Wl,--dependency-file=CMakeFiles/MoleQueue.dir/link.d -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroMoleQueue.so.1 -o ../../lib/libAvogadroMoleQueue.so.1.99.0 CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o CMakeFiles/MoleQueue.dir/batchjob.cpp.o CMakeFiles/MoleQueue.dir/inputgenerator.cpp.o CMakeFiles/MoleQueue.dir/inputgeneratordialog.cpp.o CMakeFiles/MoleQueue.dir/inputgeneratorwidget.cpp.o CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o CMakeFiles/MoleQueue.dir/molequeuewidget.cpp.o CMakeFiles/MoleQueue.dir/client/client.cpp.o CMakeFiles/MoleQueue.dir/client/jobobject.cpp.o CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/lib: ../../lib/libAvogadroQtGui.so.1.99.0 ../../lib/libAvogadroIO.so.1.99.0 ../../lib/libAvogadroCore.so.1.99.0 /usr/lib/libQt5Widgets.so.5.15.16 /usr/lib/libQt5Gui.so.5.15.16 /usr/lib/libQt5Core.so.5.15.16 /usr/lib/libQt5Widgets.so.5.15.16 /usr/lib/libQt5Gui.so.5.15.16 /usr/lib/libQt5Network.so.5.15.16 /usr/lib/libQt5Core.so.5.15.16 cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroMoleQueue.so.1.99.0 ../../lib/libAvogadroMoleQueue.so.1 ../../lib/libAvogadroMoleQueue.so gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 46%] Built target MoleQueue [ 46%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/copypaste.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/copypaste.cpp.o -MF CMakeFiles/CopyPaste.dir/copypaste.cpp.o.d -o CMakeFiles/CopyPaste.dir/copypaste.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste/copypaste.cpp [ 46%] Building CXX object avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/condadialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/condadialog.cpp.o -MF CMakeFiles/ConfigurePython.dir/condadialog.cpp.o.d -o CMakeFiles/ConfigurePython.dir/condadialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/condadialog.cpp [ 47%] Building CXX object avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/configurepython.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/configurepython.cpp.o -MF CMakeFiles/ConfigurePython.dir/configurepython.cpp.o.d -o CMakeFiles/ConfigurePython.dir/configurepython.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/configurepython.cpp [ 47%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Cartoons.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons && /usr/bin/cmake -P CMakeFiles/Cartoons.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons && /usr/bin/cmake -E cmake_link_script CMakeFiles/Cartoons.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Cartoons.a CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o CMakeFiles/Cartoons.dir/cartoons.cpp.o CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Cartoons.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 47%] Built target Cartoons [ 47%] Building CXX object avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/configurepythondialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/configurepythondialog.cpp.o -MF CMakeFiles/ConfigurePython.dir/configurepythondialog.cpp.o.d -o CMakeFiles/ConfigurePython.dir/configurepythondialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/configurepythondialog.cpp [ 47%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o -MF CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o.d -o CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp /usr/bin/gmake -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 47%] Generating ui_volumescalingdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/ui_volumescalingdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/volumescalingdialog.ui [ 47%] Generating ui_importcrystaldialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/ui_importcrystaldialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/importcrystaldialog.ui [ 47%] Generating ui_supercelldialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/ui_supercelldialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/supercelldialog.ui [ 48%] Generating ui_unitcelldialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/ui_unitcelldialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/unitcelldialog.ui cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 48%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/mocs_compilation.cpp [ 48%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/crystal.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/crystal.cpp.o -MF CMakeFiles/Crystal.dir/crystal.cpp.o.d -o CMakeFiles/Crystal.dir/crystal.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/crystal.cpp [ 48%] Building CXX object avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/ConfigurePythonPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/ConfigurePythonPlugin.cpp.o -MF CMakeFiles/ConfigurePython.dir/ConfigurePythonPlugin.cpp.o.d -o CMakeFiles/ConfigurePython.dir/ConfigurePythonPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePythonPlugin.cpp [ 48%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ConfigurePython.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython && /usr/bin/cmake -P CMakeFiles/ConfigurePython.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython && /usr/bin/cmake -E cmake_link_script CMakeFiles/ConfigurePython.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ConfigurePython.a CMakeFiles/ConfigurePython.dir/ConfigurePython_autogen/mocs_compilation.cpp.o CMakeFiles/ConfigurePython.dir/condadialog.cpp.o CMakeFiles/ConfigurePython.dir/configurepython.cpp.o CMakeFiles/ConfigurePython.dir/configurepythondialog.cpp.o CMakeFiles/ConfigurePython.dir/ConfigurePythonPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ConfigurePython.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 48%] Built target ConfigurePython [ 48%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o -MF CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o.d -o CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/importcrystaldialog.cpp [ 48%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CopyPaste.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste && /usr/bin/cmake -P CMakeFiles/CopyPaste.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_link_script CMakeFiles/CopyPaste.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CopyPaste.a CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o CMakeFiles/CopyPaste.dir/copypaste.cpp.o CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CopyPaste.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 48%] Built target CopyPaste [ 48%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/supercelldialog.cpp.o cd 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-mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/mocs_compilation.cpp [ 48%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/crystalscene.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT 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/usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/customelements.cpp.o -MF CMakeFiles/CustomElements.dir/customelements.cpp.o.d -o CMakeFiles/CustomElements.dir/customelements.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/customelements/customelements.cpp [ 48%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o -MF CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o.d -o CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp [ 48%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/unitcelldialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/unitcelldialog.cpp.o -MF CMakeFiles/Crystal.dir/unitcelldialog.cpp.o.d -o CMakeFiles/Crystal.dir/unitcelldialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/unitcelldialog.cpp /usr/bin/gmake -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 48%] Built target Editor_autogen_timestamp_deps [ 49%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o -MF CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o.d -o CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/volumescalingdialog.cpp [ 49%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o -MF CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o.d -o CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp In file included from /usr/include/c++/15/vector:68, from /usr/include/c++/15/functional:66, from /usr/include/eigen3/Eigen/Core:85, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/crystalscene.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/crystalscene.cpp:6: In member function ‘std::vector, std::allocator > >::resize(unsigned int, Eigen::Matrix const&)’, inlined from ‘Avogadro::Core::Array >::resize(unsigned int const&, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:177:19, inlined from ‘Avogadro::QtPlugins::CrystalScene::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/crystalscene.cpp:107:17: /usr/include/c++/15/bits/stl_vector.h:1167:25: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1167 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/vector:74: /usr/include/c++/15/bits/vector.tcc: In member function ‘Avogadro::QtPlugins::CrystalScene::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)’: /usr/include/c++/15/bits/vector.tcc:652:5: note: by argument 4 of type ‘const struct value_type &’ to ‘std::vector, std::allocator > >::_M_fill_insert(__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, Eigen::Matrix const&)’ declared here 652 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/crystalscene.cpp:107:17: note: ‘’ declared here 107 | strip.resize(2); | ~~~~~~~~~~~~^~~ [ 50%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CustomElements.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements && /usr/bin/cmake -P CMakeFiles/CustomElements.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_link_script CMakeFiles/CustomElements.dir/link.txt --verbose=1 /usr/bin/gmake -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build [ 51%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CrystalScene.a gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/bin/cmake -P CMakeFiles/CrystalScene.dir/cmake_clean_target.cmake [ 51%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o -MF CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/mocs_compilation.cpp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_link_script CMakeFiles/CrystalScene.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CustomElements.a CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o CMakeFiles/CustomElements.dir/customelements.cpp.o CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CustomElements.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 51%] Built target CustomElements [ 51%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o -MF CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o.d -o CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/CrystalPlugin.cpp /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CrystalScene.a CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o CMakeFiles/CrystalScene.dir/crystalscene.cpp.o CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CrystalScene.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 51%] Built target CrystalScene [ 51%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o -MF CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o.d -o CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb/fetchpdb.cpp [ 52%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o -MF CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o.d -o CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp /usr/bin/gmake -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 52%] Built target Focus_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 52%] Building CXX object avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/mocs_compilation.cpp [ 52%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Crystal.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/bin/cmake -P CMakeFiles/Crystal.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_link_script CMakeFiles/Crystal.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Crystal.a CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o CMakeFiles/Crystal.dir/crystal.cpp.o CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o CMakeFiles/Crystal.dir/supercelldialog.cpp.o CMakeFiles/Crystal.dir/unitcelldialog.cpp.o CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Crystal.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 52%] Built target Crystal [ 53%] Building CXX object avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/hydrogens.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/hydrogens.cpp.o -MF CMakeFiles/Hydrogens.dir/hydrogens.cpp.o.d -o CMakeFiles/Hydrogens.dir/hydrogens.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens/hydrogens.cpp [ 53%] Building CXX object avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o cd 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o -MF CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o.d -o CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp /usr/bin/gmake -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 53%] Generating ui_pqrwidget.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr/ui_pqrwidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr/pqrwidget.ui cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 53%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/mocs_compilation.cpp [ 53%] Linking CXX static library ../../../lib/avogadro2/staticplugins/FetchPDB.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -P CMakeFiles/FetchPDB.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/FetchPDB.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/FetchPDB.a CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/FetchPDB.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 53%] Built target FetchPDB [ 53%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/importpqr.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/importpqr.cpp.o -MF CMakeFiles/ImportPQR.dir/importpqr.cpp.o.d -o CMakeFiles/ImportPQR.dir/importpqr.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr/importpqr.cpp [ 53%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o -MF CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o.d -o CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr/pqrwidget.cpp /usr/bin/gmake -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 53%] Generating ui_insertdnadialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna/ui_insertdnadialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna/insertdnadialog.ui cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 54%] Building CXX object avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/mocs_compilation.cpp [ 54%] Building CXX object avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/insertdna.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/insertdna.cpp.o -MF CMakeFiles/NucleicInput.dir/insertdna.cpp.o.d -o CMakeFiles/NucleicInput.dir/insertdna.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna/insertdna.cpp [ 54%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Hydrogens.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -P CMakeFiles/Hydrogens.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_link_script CMakeFiles/Hydrogens.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Hydrogens.a CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o CMakeFiles/Hydrogens.dir/hydrogens.cpp.o CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Hydrogens.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 54%] Built target Hydrogens [ 54%] Building CXX object avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o -MF CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o.d -o CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/nlohmann/json.hpp:39, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna/insertdna.cpp:21: /usr/include/c++/15/ciso646:46:4: warning: #warning " is deprecated in C++17, use to detect implementation-specific macros" [-Wcpp] 46 | # warning " is deprecated in C++17, use to detect implementation-specific macros" | ^~~~~~~ /usr/bin/gmake -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/CMakeFiles/Label.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 54%] Building CXX object avogadro/qtplugins/label/CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/Label_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/Label_autogen/mocs_compilation.cpp [ 54%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o -MF CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o.d -o CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr/pqrrequest.cpp [ 54%] Building CXX object avogadro/qtplugins/label/CMakeFiles/Label.dir/label.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/Label_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/Label.dir/label.cpp.o -MF CMakeFiles/Label.dir/label.cpp.o.d -o CMakeFiles/Label.dir/label.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label/label.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/nlohmann/json.hpp:39, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr/pqrrequest.cpp:6: /usr/include/c++/15/ciso646:46:4: warning: #warning " is deprecated in C++17, use to detect implementation-specific macros" [-Wcpp] 46 | # warning " is deprecated in C++17, use to detect implementation-specific macros" | ^~~~~~~ /usr/bin/gmake -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 54%] Built target LabelEditor_autogen_timestamp_deps [ 55%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o -MF CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o.d -o CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label/label.cpp: In member function ‘void Avogadro::QtPlugins::LayerLabel::setupWidget(Avogadro::QtPlugins::Label*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label/label.cpp:155:12: warning: unused variable ‘val’ [-Wunused-variable] 155 | char val = LabelOptions::None; | ^~~ /usr/bin/gmake -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 55%] Generating ui_lammpsinputdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput/ui_lammpsinputdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui: Warning: Tab-stop assignment: 'moreButton' is not a valid widget. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui: Warning: Tab-stop assignment: 'previewText' is not a valid widget. cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 55%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp [ 55%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o -MF CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o.d -o CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp [ 55%] Building CXX object avogadro/qtplugins/label/CMakeFiles/Label.dir/LabelPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/Label_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/Label.dir/LabelPlugin.cpp.o -MF CMakeFiles/Label.dir/LabelPlugin.cpp.o.d -o CMakeFiles/Label.dir/LabelPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/LabelPlugin.cpp [ 55%] Linking CXX static library ../../../lib/avogadro2/staticplugins/NucleicInput.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna && /usr/bin/cmake -P CMakeFiles/NucleicInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna && /usr/bin/cmake -E cmake_link_script CMakeFiles/NucleicInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/NucleicInput.a CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o CMakeFiles/NucleicInput.dir/insertdna.cpp.o CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/NucleicInput.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 55%] Built target NucleicInput [ 55%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o -MF CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o.d -o CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinput.cpp [ 55%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ImportPQR.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr && /usr/bin/cmake -P CMakeFiles/ImportPQR.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr && /usr/bin/cmake -E cmake_link_script CMakeFiles/ImportPQR.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ImportPQR.a CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o CMakeFiles/ImportPQR.dir/importpqr.cpp.o CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ImportPQR.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 55%] Built target ImportPQR [ 55%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o -MF CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o.d -o CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp [ 55%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Label.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label && /usr/bin/cmake -P CMakeFiles/Label.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_link_script CMakeFiles/Label.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Label.a CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o CMakeFiles/Label.dir/label.cpp.o CMakeFiles/Label.dir/LabelPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Label.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 55%] Built target Label /usr/bin/gmake -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 56%] Generating ui_lineformatinputdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput/ui_lineformatinputdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.ui cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 56%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/mocs_compilation.cpp [ 56%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o -MF CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o.d -o CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput/lineformatinput.cpp /usr/bin/gmake -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 56%] Built target Manipulator_autogen_timestamp_deps [ 56%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o -MF CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o.d -o CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.cpp /usr/bin/gmake -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 56%] Built target MeasureTool_autogen_timestamp_deps [ 56%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o -MF CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o.d -o CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp [ 57%] Linking CXX static library ../../../lib/avogadro2/staticplugins/LammpsInput.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -P CMakeFiles/LammpsInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/LammpsInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/LammpsInput.a CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/LammpsInput.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 57%] Built target LammpsInput /usr/bin/gmake -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 57%] Built target Navigator_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 57%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o -MF CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/mocs_compilation.cpp [ 57%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o -MF CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases/networkdatabases.cpp [ 57%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o -MF CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp /usr/bin/gmake -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 58%] Generating ui_obforcefielddialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/ui_obforcefielddialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obforcefielddialog.ui [ 58%] Generating ui_conformersearchdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/ui_conformersearchdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/conformersearchdialog.ui cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 58%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/mocs_compilation.cpp [ 58%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/conformersearchdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/conformersearchdialog.cpp.o -MF CMakeFiles/OpenBabel.dir/conformersearchdialog.cpp.o.d -o CMakeFiles/OpenBabel.dir/conformersearchdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/conformersearchdialog.cpp [ 58%] Linking CXX static library ../../../lib/avogadro2/staticplugins/LineFormatInput.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -P CMakeFiles/LineFormatInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/LineFormatInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/LineFormatInput.a CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/LineFormatInput.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 58%] Built target LineFormatInput [ 58%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obcharges.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obcharges.cpp.o -MF CMakeFiles/OpenBabel.dir/obcharges.cpp.o.d -o CMakeFiles/OpenBabel.dir/obcharges.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/nlohmann/json.hpp:39, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.cpp:12: /usr/include/c++/15/ciso646:46:4: warning: #warning " is deprecated in C++17, use to detect implementation-specific macros" [-Wcpp] 46 | # warning " is deprecated in C++17, use to detect implementation-specific macros" | ^~~~~~~ [ 58%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obfileformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obfileformat.cpp.o -MF CMakeFiles/OpenBabel.dir/obfileformat.cpp.o.d -o CMakeFiles/OpenBabel.dir/obfileformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obfileformat.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/nlohmann/json.hpp:39, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obfileformat.cpp:10: /usr/include/c++/15/ciso646:46:4: warning: #warning " is deprecated in C++17, use to detect implementation-specific macros" [-Wcpp] 46 | # warning " is deprecated in C++17, use to detect implementation-specific macros" | ^~~~~~~ [ 58%] Linking CXX static library ../../../lib/avogadro2/staticplugins/NetworkDatabases.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -P CMakeFiles/NetworkDatabases.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_link_script CMakeFiles/NetworkDatabases.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/NetworkDatabases.a CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/NetworkDatabases.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 58%] Built target NetworkDatabases [ 58%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o -MF CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o.d -o CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obforcefielddialog.cpp /usr/bin/gmake -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 58%] Generating ui_openmminputdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput/ui_openmminputdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput/openmminputdialog.ui cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 58%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.h: In constructor ‘Avogadro::QtPlugins::OBCharges::OBCharges(const std::string&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.h:65:15: warning: ‘Avogadro::QtPlugins::OBCharges::m_identifier’ will be initialized after [-Wreorder] 65 | std::string m_identifier; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.cpp:65:77: warning: base ‘Avogadro::Calc::ChargeModel’ [-Wreorder] 65 | OBCharges::OBCharges(const std::string& id) : m_identifier(id), ChargeModel() | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.cpp:65:1: warning: when initialized here [-Wreorder] 65 | OBCharges::OBCharges(const std::string& id) : m_identifier(id), ChargeModel() | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.cpp: In member function ‘virtual Avogadro::MatrixX Avogadro::QtPlugins::OBCharges::partialCharges(Avogadro::Core::Molecule&) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.cpp:172:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] 172 | for (unsigned int i = 0; i < charges.rows(); ++i) { | ~~^~~~~~~~~~~~~~~~ /usr/bin/gmake -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 58%] Built target PlayerTool_autogen_timestamp_deps [ 59%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o -MF CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o.d -o CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput/openmminputdialog.cpp [ 59%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminput.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput 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/usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminput.cpp.o -MF CMakeFiles/OpenMMInput.dir/openmminput.cpp.o.d -o CMakeFiles/OpenMMInput.dir/openmminput.cpp.o -c 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-isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ply/CMakeFiles/PLY.dir/PLY_autogen/mocs_compilation.cpp.o -MF CMakeFiles/PLY.dir/PLY_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/PLY.dir/PLY_autogen/mocs_compilation.cpp.o -c 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ply/CMakeFiles/PLY.dir/ply.cpp.o -MF CMakeFiles/PLY.dir/ply.cpp.o.d -o CMakeFiles/PLY.dir/ply.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ply/ply.cpp /usr/bin/gmake -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 59%] Building CXX object avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o -MF CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/mocs_compilation.cpp [ 60%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obprocess.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io 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-std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obprocess.cpp.o -MF CMakeFiles/OpenBabel.dir/obprocess.cpp.o.d -o CMakeFiles/OpenBabel.dir/obprocess.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obprocess.cpp [ 60%] Building CXX object avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/povray.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray 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-isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/povray.cpp.o -MF CMakeFiles/POVRay.dir/povray.cpp.o.d -o CMakeFiles/POVRay.dir/povray.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray/povray.cpp [ 60%] Building CXX object avogadro/qtplugins/ply/CMakeFiles/PLY.dir/PLYPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build 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-mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ply/CMakeFiles/PLY.dir/PLYPlugin.cpp.o -MF CMakeFiles/PLY.dir/PLYPlugin.cpp.o.d -o CMakeFiles/PLY.dir/PLYPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply/PLYPlugin.cpp [ 61%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PLY.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply && /usr/bin/cmake -P CMakeFiles/PLY.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply && /usr/bin/cmake -E cmake_link_script CMakeFiles/PLY.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PLY.a 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/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/openbabel.cpp.o -MF CMakeFiles/OpenBabel.dir/openbabel.cpp.o.d -o CMakeFiles/OpenBabel.dir/openbabel.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/openbabel.cpp [ 61%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 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-fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o -MF CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o.d -o CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp /usr/bin/gmake -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 61%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o -MF CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/mocs_compilation.cpp [ 61%] Building CXX object avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o -MF CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o.d -o CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray/POVRayPlugin.cpp [ 61%] Linking CXX static library ../../../lib/avogadro2/staticplugins/OpenMMInput.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput && /usr/bin/cmake -P CMakeFiles/OpenMMInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/OpenMMInput.a CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o CMakeFiles/OpenMMInput.dir/openmminput.cpp.o CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OpenMMInput.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 61%] Built target OpenMMInput [ 61%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertytables.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertytables.cpp.o -MF CMakeFiles/PropertyTables.dir/propertytables.cpp.o.d -o CMakeFiles/PropertyTables.dir/propertytables.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertytables.cpp [ 61%] Linking CXX static library ../../../lib/avogadro2/staticplugins/POVRay.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray && /usr/bin/cmake -P CMakeFiles/POVRay.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_link_script CMakeFiles/POVRay.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/POVRay.a CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o CMakeFiles/POVRay.dir/povray.cpp.o CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/POVRay.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 61%] Built target POVRay [ 61%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o -MF CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o.d -o CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp [ 61%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertymodel.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertymodel.cpp.o -MF CMakeFiles/PropertyTables.dir/propertymodel.cpp.o.d -o CMakeFiles/PropertyTables.dir/propertymodel.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertymodel.cpp /usr/bin/gmake -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 61%] Built target ResetView_autogen_timestamp_deps [ 62%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertyview.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertyview.cpp.o -MF CMakeFiles/PropertyTables.dir/propertyview.cpp.o.d -o CMakeFiles/PropertyTables.dir/propertyview.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.cpp /usr/bin/gmake -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select/CMakeFiles/Select.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 63%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select/Select_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select/Select_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.h: In constructor ‘Avogadro::PropertyView::PropertyView(Avogadro::PropertyType, QWidget*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.h:39:20: warning: ‘Avogadro::PropertyView::m_molecule’ will be initialized after [-Wreorder] 39 | QtGui::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.h:38:16: warning: ‘Avogadro::PropertyType Avogadro::PropertyView::m_type’ [-Wreorder] 38 | PropertyType m_type; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.cpp:37:1: warning: when initialized here [-Wreorder] 37 | PropertyView::PropertyView(PropertyType type, QWidget* parent) | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.cpp: In member function ‘virtual void Avogadro::PropertyView::selectionChanged(const QItemSelection&, const QItemSelection&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.cpp:112:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘Avogadro::Index’ {aka ‘unsigned int’} [-Wsign-compare] 112 | if (rowNum >= m_molecule->atomCount()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.cpp:117:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘Avogadro::Index’ {aka ‘unsigned int’} [-Wsign-compare] 117 | if (rowNum >= m_molecule->bondCount()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 63%] Linking CXX static library ../../../lib/avogadro2/staticplugins/OpenBabel.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel && /usr/bin/cmake -P CMakeFiles/OpenBabel.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenBabel.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/OpenBabel.a CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o CMakeFiles/OpenBabel.dir/conformersearchdialog.cpp.o CMakeFiles/OpenBabel.dir/obcharges.cpp.o CMakeFiles/OpenBabel.dir/obfileformat.cpp.o CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o CMakeFiles/OpenBabel.dir/obprocess.cpp.o CMakeFiles/OpenBabel.dir/openbabel.cpp.o CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OpenBabel.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 63%] Built target OpenBabel [ 63%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/select.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select/Select_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/select.cpp.o -MF CMakeFiles/Select.dir/select.cpp.o.d -o CMakeFiles/Select.dir/select.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select/select.cpp [ 63%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/SelectPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select/Select_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/SelectPlugin.cpp.o -MF CMakeFiles/Select.dir/SelectPlugin.cpp.o.d -o CMakeFiles/Select.dir/SelectPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select/SelectPlugin.cpp [ 63%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o -MF CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o.d -o CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp /usr/bin/gmake -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 63%] Built target Selection_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 63%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o -MF CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/mocs_compilation.cpp /usr/bin/gmake -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 63%] Built target Surfaces_autogen_timestamp_deps [ 63%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o -MF CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o.d -o CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup/spacegroup.cpp /usr/bin/gmake -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 63%] Built target TemplateTool_autogen_timestamp_deps [ 63%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o -MF CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o.d -o CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp /usr/bin/gmake -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 63%] Generating ui_vibrationdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/ui_vibrationdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations/vibrationdialog.ui cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 63%] Building CXX object avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/Vibrations_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/Vibrations_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Vibrations.dir/Vibrations_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Vibrations.dir/Vibrations_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/mocs_compilation.cpp [ 63%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PropertyTables.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables && /usr/bin/cmake -P CMakeFiles/PropertyTables.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables && /usr/bin/cmake -E cmake_link_script CMakeFiles/PropertyTables.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PropertyTables.a CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o CMakeFiles/PropertyTables.dir/propertytables.cpp.o CMakeFiles/PropertyTables.dir/propertymodel.cpp.o CMakeFiles/PropertyTables.dir/propertyview.cpp.o CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PropertyTables.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 63%] Built target PropertyTables [ 63%] Building CXX object avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/vibrationdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/vibrationdialog.cpp.o -MF CMakeFiles/Vibrations.dir/vibrationdialog.cpp.o.d -o CMakeFiles/Vibrations.dir/vibrationdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations/vibrationdialog.cpp [ 63%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Select.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select && /usr/bin/cmake -P CMakeFiles/Select.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select && /usr/bin/cmake -E cmake_link_script CMakeFiles/Select.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Select.a CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o CMakeFiles/Select.dir/select.cpp.o CMakeFiles/Select.dir/SelectPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Select.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 63%] Built target Select [ 63%] Building CXX object avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/vibrationmodel.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/vibrationmodel.cpp.o -MF CMakeFiles/Vibrations.dir/vibrationmodel.cpp.o.d -o CMakeFiles/Vibrations.dir/vibrationmodel.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations/vibrationmodel.cpp [ 64%] Building CXX object avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/vibrations.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/vibrations.cpp.o -MF CMakeFiles/Vibrations.dir/vibrations.cpp.o.d -o CMakeFiles/Vibrations.dir/vibrations.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations/vibrations.cpp /usr/bin/gmake -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 64%] Linking CXX static library ../../../lib/avogadro2/staticplugins/SpaceGroup.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -P CMakeFiles/SpaceGroup.dir/cmake_clean_target.cmake [ 64%] Building CXX object avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o -MF CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/mocs_compilation.cpp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_link_script CMakeFiles/SpaceGroup.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/SpaceGroup.a CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/SpaceGroup.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 64%] Built target SpaceGroup [ 65%] Building CXX object avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/vrml.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/vrml.cpp.o -MF CMakeFiles/VRML.dir/vrml.cpp.o.d -o CMakeFiles/VRML.dir/vrml.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml/vrml.cpp /usr/bin/gmake -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 65%] Built target apbs_autogen_timestamp_deps [ 65%] Building CXX object avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRMLPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRMLPlugin.cpp.o -MF CMakeFiles/VRML.dir/VRMLPlugin.cpp.o.d -o CMakeFiles/VRML.dir/VRMLPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml/VRMLPlugin.cpp [ 65%] Building CXX object avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/VibrationsPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/VibrationsPlugin.cpp.o -MF CMakeFiles/Vibrations.dir/VibrationsPlugin.cpp.o.d -o CMakeFiles/Vibrations.dir/VibrationsPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/VibrationsPlugin.cpp /usr/bin/gmake -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 65%] Generating ui_coordinateeditordialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/ui_coordinateeditordialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.ui cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 66%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/mocs_compilation.cpp /usr/bin/gmake -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 66%] Built target Cp2kInput_autogen_timestamp_deps [ 66%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditor.cpp /usr/bin/gmake -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 67%] Generating ui_forcefielddialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/ui_forcefielddialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefielddialog.ui cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 67%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/Forcefield_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield && /usr/bin/g++ -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/../prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/openbabel3 -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/Forcefield_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Forcefield.dir/Forcefield_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Forcefield.dir/Forcefield_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/mocs_compilation.cpp [ 67%] Linking CXX static library ../../../lib/avogadro2/staticplugins/VRML.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml && /usr/bin/cmake -P CMakeFiles/VRML.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml && /usr/bin/cmake -E cmake_link_script CMakeFiles/VRML.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/VRML.a CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o CMakeFiles/VRML.dir/vrml.cpp.o CMakeFiles/VRML.dir/VRMLPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/VRML.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 67%] Built target VRML [ 67%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp [ 67%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Vibrations.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations && /usr/bin/cmake -P CMakeFiles/Vibrations.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations && /usr/bin/cmake -E cmake_link_script CMakeFiles/Vibrations.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Vibrations.a CMakeFiles/Vibrations.dir/Vibrations_autogen/mocs_compilation.cpp.o CMakeFiles/Vibrations.dir/vibrationdialog.cpp.o CMakeFiles/Vibrations.dir/vibrationmodel.cpp.o CMakeFiles/Vibrations.dir/vibrations.cpp.o CMakeFiles/Vibrations.dir/VibrationsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Vibrations.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 67%] Built target Vibrations [ 67%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/forcefield.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield && /usr/bin/g++ -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/../prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/openbabel3 -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/forcefield.cpp.o -MF CMakeFiles/Forcefield.dir/forcefield.cpp.o.d -o CMakeFiles/Forcefield.dir/forcefield.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp [ 67%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp [ 67%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o -MF CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp /usr/bin/gmake -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 67%] Built target GamessInput_autogen_timestamp_deps [ 67%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/forcefielddialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield && /usr/bin/g++ -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/../prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/openbabel3 -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/forcefielddialog.cpp.o -MF CMakeFiles/Forcefield.dir/forcefielddialog.cpp.o.d -o CMakeFiles/Forcefield.dir/forcefielddialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefielddialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp: In member function ‘void Avogadro::QtPlugins::CoordinateEditorDialog::validateInputWorker()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:413:15: warning: unused variable ‘index’ [-Wunused-variable] 413 | int index = tokenCursor.selectedText().toInt(&isInt); | ^~~~~ /usr/bin/gmake -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 67%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o -MF CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp: In member function ‘void Avogadro::QtPlugins::Forcefield::optimize()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:257:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 257 | for (Index i = 0; i < 3 * n; ++i) { | ~~^~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:310:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 310 | for (size_t i = 0; i < n; ++i) { | ~~^~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:308:12: warning: variable ‘isFinite’ set but not used [-Wunused-but-set-variable] 308 | bool isFinite = true; | ^~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp: In member function ‘void Avogadro::QtPlugins::Forcefield::forces()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:384:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 384 | for (Index i = 0; i < 3 * n; ++i) { | ~~^~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:404:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 404 | for (size_t i = 0; i < n; ++i) { | ~~^~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp: In member function ‘void Avogadro::QtPlugins::Forcefield::freezeSelected()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:455:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (Index i = 0; i < numAtoms; ++i) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp: In member function ‘void Avogadro::QtPlugins::Forcefield::unfreezeSelected()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:469:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 469 | for (Index i = 0; i < numAtoms; ++i) { | ~~^~~~~~~~~~ [ 67%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragment.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragment.cpp.o -MF CMakeFiles/InsertFragment.dir/insertfragment.cpp.o.d -o CMakeFiles/InsertFragment.dir/insertfragment.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:26: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/avogadropython.h: At global scope: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/avogadropython.h:2:20: warning: ‘Avogadro::pythonInterpreterPath’ defined but not used [-Wunused-variable] 2 | static const char *pythonInterpreterPath = "/usr/bin/python3"; | ^~~~~~~~~~~~~~~~~~~~~ /usr/bin/gmake -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 67%] Generating ui_molecularpropertiesdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/ui_molecularpropertiesdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.ui cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 67%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o -MF CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/mocs_compilation.cpp In member function ‘__ct ’, inlined from ‘QVector<(anonymous namespace)::AtomStruct>::append((anonymous namespace)::AtomStruct const&)’ at /usr/include/qt5/QtCore/qvector.h:793:13, inlined from ‘QVector<(anonymous namespace)::AtomStruct>::operator<<((anonymous namespace)::AtomStruct const&)’ at /usr/include/qt5/QtCore/qvector.h:293:13, inlined from ‘Avogadro::QtPlugins::CoordinateEditorDialog::validateInputWorker()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:509:28: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:93:8: warning: ‘atom.atomicNumber’ may be used uninitialized [-Wmaybe-uninitialized] 93 | struct AtomStruct | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp: In member function ‘Avogadro::QtPlugins::CoordinateEditorDialog::validateInputWorker()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:341:16: note: ‘atom.atomicNumber’ was declared here 341 | AtomStruct atom; | ^~~~ In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.h: In constructor ‘Avogadro::QtPlugins::InsertFragment::InsertFragment(QObject*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.h:50:32: warning: ‘Avogadro::QtPlugins::InsertFragment::m_crystalDialog’ will be initialized after [-Wreorder] 50 | QtGui::InsertFragmentDialog* m_crystalDialog; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.h:49:32: warning: ‘Avogadro::QtGui::InsertFragmentDialog* Avogadro::QtPlugins::InsertFragment::m_moleculeDialog’ [-Wreorder] 49 | QtGui::InsertFragmentDialog* m_moleculeDialog; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.cpp:28:1: warning: when initialized here [-Wreorder] 28 | InsertFragment::InsertFragment(QObject* parent_) | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.h:55:19: warning: ‘Avogadro::QtPlugins::InsertFragment::m_reader’ will be initialized after [-Wreorder] 55 | Io::FileFormat* m_reader; | ^~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.h:54:20: warning: ‘Avogadro::QtGui::Molecule* Avogadro::QtPlugins::InsertFragment::m_molecule’ [-Wreorder] 54 | QtGui::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.cpp:28:1: warning: when initialized here [-Wreorder] 28 | InsertFragment::InsertFragment(QObject* parent_) | ^~~~~~~~~~~~~~ [ 67%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o -MF CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o.d -o CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties/molecularproperties.cpp [ 67%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CoordinateEditor.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -P CMakeFiles/CoordinateEditor.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_link_script CMakeFiles/CoordinateEditor.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CoordinateEditor.a CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CoordinateEditor.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 67%] Built target CoordinateEditor [ 67%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o -MF CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o.d -o CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.cpp [ 67%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o -MF CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o.d -o CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp [ 67%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/obmmenergy.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield && /usr/bin/g++ -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/../prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/openbabel3 -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/obmmenergy.cpp.o -MF CMakeFiles/Forcefield.dir/obmmenergy.cpp.o.d -o CMakeFiles/Forcefield.dir/obmmenergy.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp [ 68%] Linking CXX static library ../../../lib/avogadro2/staticplugins/InsertFragment.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -P CMakeFiles/InsertFragment.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E cmake_link_script CMakeFiles/InsertFragment.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/InsertFragment.a CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o CMakeFiles/InsertFragment.dir/insertfragment.cpp.o CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/InsertFragment.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 68%] Built target InsertFragment [ 68%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/scriptenergy.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield && /usr/bin/g++ -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/../prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/openbabel3 -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/scriptenergy.cpp.o -MF CMakeFiles/Forcefield.dir/scriptenergy.cpp.o.d -o CMakeFiles/Forcefield.dir/scriptenergy.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.h: In constructor ‘Avogadro::QtPlugins::OBMMEnergy::OBMMEnergy(const std::string&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.h:82:15: warning: ‘Avogadro::QtPlugins::OBMMEnergy::m_name’ will be initialized after [-Wreorder] 82 | std::string m_name; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.h:77:13: warning: ‘QProcess* Avogadro::QtPlugins::OBMMEnergy::m_process’ [-Wreorder] 77 | QProcess* m_process; | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp:20:1: warning: when initialized here [-Wreorder] 20 | OBMMEnergy::OBMMEnergy(const std::string& method) | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.h:77:13: warning: ‘Avogadro::QtPlugins::OBMMEnergy::m_process’ will be initialized after [-Wreorder] 77 | QProcess* m_process; | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.h:75:19: warning: ‘Avogadro::Core::Molecule* Avogadro::QtPlugins::OBMMEnergy::m_molecule’ [-Wreorder] 75 | Core::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp:20:1: warning: when initialized here [-Wreorder] 20 | OBMMEnergy::OBMMEnergy(const std::string& method) | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp: In member function ‘virtual Avogadro::Real Avogadro::QtPlugins::OBMMEnergy::value(const Eigen::VectorXd&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp:225:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘int’} [-Wsign-compare] 225 | for (Index i = 0; i < x.size(); i += 3) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp: In member function ‘virtual void Avogadro::QtPlugins::OBMMEnergy::gradient(const Eigen::VectorXd&, Eigen::VectorXd&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp:258:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘int’} [-Wsign-compare] 258 | for (Index i = 0; i < x.size(); i += 3) { | ~~^~~~~~~~~~ [ 68%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o -MF CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o.d -o CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.h: In constructor ‘Avogadro::QtPlugins::ScriptEnergy::ScriptEnergy(const QString&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.h:91:8: warning: ‘Avogadro::QtPlugins::ScriptEnergy::m_valid’ will be initialized after [-Wreorder] 91 | bool m_valid; | ^~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.h:86:10: warning: ‘Avogadro::QtPlugins::ScriptEnergy::Format Avogadro::QtPlugins::ScriptEnergy::m_inputFormat’ [-Wreorder] 86 | Format m_inputFormat; | ^~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.cpp:29:1: warning: when initialized here [-Wreorder] 29 | ScriptEnergy::ScriptEnergy(const QString& scriptFileName_) | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.cpp: In member function ‘virtual Avogadro::Real Avogadro::QtPlugins::ScriptEnergy::value(const Eigen::VectorXd&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.cpp:116:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘int’} [-Wsign-compare] 116 | for (Index i = 0; i < x.size(); i += 3) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.cpp: In member function ‘virtual void Avogadro::QtPlugins::ScriptEnergy::gradient(const Eigen::VectorXd&, Eigen::VectorXd&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.cpp:149:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘int’} [-Wsign-compare] 149 | for (Index i = 0; i < x.size(); i += 3) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.cpp:176:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::EigenBase >::Index’ {aka ‘int’} [-Wsign-compare] 176 | if (i > x.size()) | ~~^~~~~~~~~~ /usr/bin/gmake -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 68%] Built target SVG_autogen_timestamp_deps [ 69%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/obenergy.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield && /usr/bin/g++ -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/../prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/openbabel3 -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/obenergy.cpp.o -MF CMakeFiles/Forcefield.dir/obenergy.cpp.o.d -o CMakeFiles/Forcefield.dir/obenergy.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.cpp [ 69%] Linking CXX static library ../../../lib/avogadro2/staticplugins/MolecularProperties.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -P CMakeFiles/MolecularProperties.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolecularProperties.dir/link.txt --verbose=1 [ 69%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/ForcefieldPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield && /usr/bin/g++ -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/../prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/ForcefieldPlugin.cpp.o -MF CMakeFiles/Forcefield.dir/ForcefieldPlugin.cpp.o.d -o CMakeFiles/Forcefield.dir/ForcefieldPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/ForcefieldPlugin.cpp /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/MolecularProperties.a CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/MolecularProperties.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 69%] Built target MolecularProperties /usr/bin/gmake -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 70%] Building CXX object avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o -MF CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.cpp:7: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.h: In constructor ‘Avogadro::QtPlugins::OBEnergy::OBEnergy(const std::string&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.h:59:15: warning: ‘Avogadro::QtPlugins::OBEnergy::m_name’ will be initialized after [-Wreorder] 59 | std::string m_name; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.h:54:19: warning: ‘Avogadro::Core::Molecule* Avogadro::QtPlugins::OBEnergy::m_molecule’ [-Wreorder] 54 | Core::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.cpp:43:1: warning: when initialized here [-Wreorder] 43 | OBEnergy::OBEnergy(const std::string& method) | ^~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.cpp: In member function ‘virtual void Avogadro::QtPlugins::OBEnergy::gradient(const Eigen::VectorXd&, Eigen::VectorXd&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.cpp:183:12: warning: unused variable ‘energy’ [-Wunused-variable] 183 | double energy = d->m_forceField->Energy(true); | ^~~~~~ [ 70%] Building CXX object avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/command.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/command.cpp.o -MF CMakeFiles/commands.dir/command.cpp.o.d -o CMakeFiles/commands.dir/command.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts/command.cpp [ 70%] Building CXX object avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commandsPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commandsPlugin.cpp.o -MF CMakeFiles/commands.dir/commandsPlugin.cpp.o.d -o CMakeFiles/commands.dir/commandsPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp /usr/bin/gmake -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 70%] Built target QuantumInput_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 71%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/mocs_compilation.cpp [ 71%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o -MF CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o.d -o CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp /usr/bin/gmake -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 72%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/mocs_compilation.cpp [ 72%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Forcefield.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield && /usr/bin/cmake -P CMakeFiles/Forcefield.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield && /usr/bin/cmake -E cmake_link_script CMakeFiles/Forcefield.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Forcefield.a CMakeFiles/Forcefield.dir/Forcefield_autogen/mocs_compilation.cpp.o CMakeFiles/Forcefield.dir/forcefield.cpp.o CMakeFiles/Forcefield.dir/forcefielddialog.cpp.o CMakeFiles/Forcefield.dir/obmmenergy.cpp.o CMakeFiles/Forcefield.dir/scriptenergy.cpp.o CMakeFiles/Forcefield.dir/obenergy.cpp.o CMakeFiles/Forcefield.dir/ForcefieldPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Forcefield.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 72%] Built target Forcefield [ 72%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats/scriptfileformats.cpp [ 72%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats/fileformatscript.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.h: In constructor ‘Avogadro::QtPlugins::ScriptChargeModel::ScriptChargeModel(const QString&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.h:86:8: warning: ‘Avogadro::QtPlugins::ScriptChargeModel::m_electrostatics’ will be initialized after [-Wreorder] 86 | bool m_electrostatics; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.h:82:10: warning: ‘Avogadro::QtPlugins::ScriptChargeModel::Format Avogadro::QtPlugins::ScriptChargeModel::m_inputFormat’ [-Wreorder] 82 | Format m_inputFormat; | ^~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:28:1: warning: when initialized here [-Wreorder] 28 | ScriptChargeModel::ScriptChargeModel(const QString& scriptFileName_) | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp: In member function ‘virtual Avogadro::MatrixX Avogadro::QtPlugins::ScriptChargeModel::partialCharges(Avogadro::Core::Molecule&) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:58:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] 58 | for (unsigned int i = 0; i < charges.rows(); ++i) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:95:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 95 | for (unsigned int i = 0; i < lines.size(); ++i) { | ~~^~~~~~~~~~~~~~ [ 72%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp [ 72%] Linking CXX static library ../../../lib/avogadro2/staticplugins/commands.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -P CMakeFiles/commands.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E cmake_link_script CMakeFiles/commands.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/commands.a CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o CMakeFiles/commands.dir/command.cpp.o CMakeFiles/commands.dir/commandsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/commands.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 72%] Built target commands [ 72%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o -MF CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o.d -o CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptcharges.cpp [ 72%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o -MF CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o.d -o CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp /usr/bin/gmake -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 72%] Generating ui_downloaderwidget.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/ui_downloaderwidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/downloaderwidget.ui cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 72%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o -MF CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/nlohmann/json.hpp:39, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/plugindownloader/downloaderwidget.h:15, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/mocs_compilation.cpp:2: /usr/include/c++/15/ciso646:46:4: warning: #warning " is deprecated in C++17, use to detect implementation-specific macros" [-Wcpp] 46 | # warning " is deprecated in C++17, use to detect implementation-specific macros" | ^~~~~~~ [ 72%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o -MF CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o.d -o CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/plugindownloader.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/nlohmann/json.hpp:39, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/downloaderwidget.h:15, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/plugindownloader.cpp:7: /usr/include/c++/15/ciso646:46:4: warning: #warning " is deprecated in C++17, use to detect implementation-specific macros" [-Wcpp] 46 | # warning " is deprecated in C++17, use to detect implementation-specific macros" | ^~~~~~~ [ 72%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ScriptFileFormats.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -P CMakeFiles/ScriptFileFormats.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_link_script CMakeFiles/ScriptFileFormats.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ScriptFileFormats.a CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ScriptFileFormats.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 72%] Built target ScriptFileFormats [ 72%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o -MF CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o.d -o CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/downloaderwidget.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/nlohmann/json.hpp:39, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/downloaderwidget.h:15, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/downloaderwidget.cpp:6: /usr/include/c++/15/ciso646:46:4: warning: #warning " is deprecated in C++17, use to detect implementation-specific macros" [-Wcpp] 46 | # warning " is deprecated in C++17, use to detect implementation-specific macros" | ^~~~~~~ [ 72%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ScriptCharges.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -P CMakeFiles/ScriptCharges.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/ScriptCharges.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ScriptCharges.a CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ScriptCharges.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 72%] Built target ScriptCharges [ 72%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o -MF CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o.d -o CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/zipextracter.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/zipextracter.cpp: In member function ‘QList Avogadro::QtPlugins::ZipExtracter::extract(std::string, std::string)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/zipextracter.cpp:110:8: warning: unused variable ‘itrCount’ [-Wunused-variable] 110 | long itrCount = 0; | ^~~~~~~~ /usr/bin/gmake -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 72%] Building CXX object avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o -MF CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick/BallStick_autogen/mocs_compilation.cpp [ 72%] Building CXX object avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/ballandstick.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/ballandstick.cpp.o -MF CMakeFiles/BallStick.dir/ballandstick.cpp.o.d -o CMakeFiles/BallStick.dir/ballandstick.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick/ballandstick.cpp /usr/bin/gmake -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 72%] Building CXX object avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/mocs_compilation.cpp [ 72%] Building CXX object avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/closecontacts.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/closecontacts.cpp.o -MF CMakeFiles/CloseContacts.dir/closecontacts.cpp.o.d -o CMakeFiles/CloseContacts.dir/closecontacts.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts/closecontacts.cpp [ 72%] Building CXX object avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o -MF CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o.d -o CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp /usr/bin/gmake -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force/CMakeFiles/Force.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 72%] Building CXX object avogadro/qtplugins/force/CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force/Force_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/force/CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force/Force_autogen/mocs_compilation.cpp [ 72%] Building CXX object avogadro/qtplugins/force/CMakeFiles/Force.dir/force.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force/Force_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/force/CMakeFiles/Force.dir/force.cpp.o -MF CMakeFiles/Force.dir/force.cpp.o.d -o CMakeFiles/Force.dir/force.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force/force.cpp [ 72%] Linking CXX static library ../../../lib/avogadro2/staticplugins/BallStick.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -P CMakeFiles/BallStick.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_link_script CMakeFiles/BallStick.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/BallStick.a CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o CMakeFiles/BallStick.dir/ballandstick.cpp.o CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/BallStick.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 72%] Built target BallStick [ 73%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o -MF CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o.d -o CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp [ 73%] Building CXX object avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o -MF CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o.d -o CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp [ 73%] Building CXX object avogadro/qtplugins/force/CMakeFiles/Force.dir/ForcePlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force/Force_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/force/CMakeFiles/Force.dir/ForcePlugin.cpp.o -MF CMakeFiles/Force.dir/ForcePlugin.cpp.o.d -o CMakeFiles/Force.dir/ForcePlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force/ForcePlugin.cpp [ 73%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PluginDownloader.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -P CMakeFiles/PluginDownloader.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E cmake_link_script CMakeFiles/PluginDownloader.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PluginDownloader.a CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PluginDownloader.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 73%] Built target PluginDownloader /usr/bin/gmake -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 73%] Building CXX object avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/mocs_compilation.cpp /usr/bin/gmake -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/mocs_compilation.cpp [ 73%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Force.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force && /usr/bin/cmake -P CMakeFiles/Force.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force && /usr/bin/cmake -E cmake_link_script 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/usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/licorice.cpp.o -MF CMakeFiles/Licorice.dir/licorice.cpp.o.d -o CMakeFiles/Licorice.dir/licorice.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice/licorice.cpp [ 74%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CloseContacts.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -P CMakeFiles/CloseContacts.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E cmake_link_script CMakeFiles/CloseContacts.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CloseContacts.a CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o CMakeFiles/CloseContacts.dir/closecontacts.cpp.o CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CloseContacts.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 74%] Built target CloseContacts [ 74%] Building CXX object avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o -MF CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o.d -o CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice/LicoricePlugin.cpp [ 74%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/meshes.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/meshes.cpp.o -MF CMakeFiles/Meshes.dir/meshes.cpp.o.d -o CMakeFiles/Meshes.dir/meshes.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes/meshes.cpp /usr/bin/gmake -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 74%] Building CXX object avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o -MF CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/mocs_compilation.cpp [ 74%] Building CXX object avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/noncovalent.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/noncovalent.cpp.o -MF CMakeFiles/NonCovalent.dir/noncovalent.cpp.o.d -o CMakeFiles/NonCovalent.dir/noncovalent.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent/noncovalent.cpp [ 74%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Licorice.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice && /usr/bin/cmake -P CMakeFiles/Licorice.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_link_script CMakeFiles/Licorice.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Licorice.a CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o CMakeFiles/Licorice.dir/licorice.cpp.o CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Licorice.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 74%] Built target Licorice [ 74%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o -MF CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o.d -o CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes/MeshesPlugin.cpp /usr/bin/gmake -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 74%] Building CXX object avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o -MF CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/mocs_compilation.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes/meshes.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes/meshes.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned int, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned int, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned int, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::Meshes::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes/meshes.cpp:86:53: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.391143].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes/meshes.cpp: In member function ‘Avogadro::QtPlugins::Meshes::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes/meshes.cpp:86:53: note: ‘’ declared here 86 | Core::Array colorsRGB(colors.size()); | ^ /usr/bin/gmake -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 74%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/mocs_compilation.cpp [ 74%] Building CXX object avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o -MF CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o.d -o CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals/vanderwaals.cpp [ 74%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/wireframe.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/wireframe.cpp.o -MF CMakeFiles/Wireframe.dir/wireframe.cpp.o.d -o CMakeFiles/Wireframe.dir/wireframe.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe/wireframe.cpp [ 75%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Meshes.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes && /usr/bin/cmake -P CMakeFiles/Meshes.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_link_script CMakeFiles/Meshes.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Meshes.a CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o CMakeFiles/Meshes.dir/meshes.cpp.o CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Meshes.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 75%] Built target Meshes [ 76%] Building CXX object avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o -MF CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o.d -o CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp [ 76%] Building CXX object avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o -MF CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o.d -o CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp [ 77%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o -MF CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o.d -o CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe/WireframePlugin.cpp [ 77%] Linking CXX static library ../../../lib/avogadro2/staticplugins/VanDerWaals.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -P CMakeFiles/VanDerWaals.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_link_script CMakeFiles/VanDerWaals.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/VanDerWaals.a CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/VanDerWaals.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 77%] Built target VanDerWaals /usr/bin/gmake -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 77%] Built target OverlayAxes_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 77%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/mocs_compilation.cpp [ 77%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimextension.cpp /usr/bin/gmake -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 78%] Automatic MOC for target AlignTool cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/aligntool/AlignTool_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/aligntool/aligntool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/aligntool/aligntool.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/aligntool/AlignToolPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/aligntool/AlignTool_autogen/EWIEGA46WW/moc_aligntool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/aligntool/aligntool.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool/AlignTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool/AlignTool_autogen/EWIEGA46WW/moc_aligntool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/aligntool/AlignTool_autogen/include/AlignToolPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/aligntool/AlignToolPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool/AlignTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool/AlignTool_autogen/include/AlignToolPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool/AlignToolPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/aligntool/AlignTool_autogen/EWIEGA46WW/moc_aligntool.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/aligntool/AlignTool_autogen/include/AlignToolPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/aligntool/AlignTool_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/aligntool/AlignTool_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool/AlignTool_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 78%] Built target AlignTool_autogen [ 78%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp [ 78%] Linking CXX static library ../../../lib/avogadro2/staticplugins/NonCovalent.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -P CMakeFiles/NonCovalent.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E cmake_link_script CMakeFiles/NonCovalent.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/NonCovalent.a CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o CMakeFiles/NonCovalent.dir/noncovalent.cpp.o CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/NonCovalent.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 78%] Built target NonCovalent [ 79%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.cpp [ 79%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Wireframe.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe && /usr/bin/cmake -P CMakeFiles/Wireframe.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_link_script CMakeFiles/Wireframe.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Wireframe.a CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o CMakeFiles/Wireframe.dir/wireframe.cpp.o CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Wireframe.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 79%] Built target Wireframe [ 79%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp: In member function ‘Avogadro::QtPlugins::QTAIMODEIntegrator::r8_f(double, double*, double*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:267:23: warning: ‘MEM[(double &)&gradient + 16]’ may be used uninitialized [-Wmaybe-uninitialized] 267 | yp[2] = gradient(2) / normGradient; | ~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:196:23: note: ‘MEM[(double &)&gradient + 16]’ was declared here 196 | Matrix gradient; | ^~~~~~~~ /usr/bin/gmake -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 79%] Automatic MOC for target BondCentric cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp: In member function ‘Avogadro::QtPlugins::QTAIMODEIntegrator::integrate(QVector3D)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:56:10: warning: ‘n_step’ may be used uninitialized [-Wmaybe-uninitialized] 56 | qint64 n_step; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:151:40: warning: ‘abserr’ may be used uninitialized [-Wmaybe-uninitialized] 151 | flag = QTAIMODEIntegrator::r8_rkf45(NEQN, y, yp, &t, t_out, &relerr, abserr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | flag); | ~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:53:9: note: ‘abserr’ was declared here 53 | qreal abserr; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:145:69: warning: ‘t_stop’ may be used uninitialized [-Wmaybe-uninitialized] 145 | ((qreal)(n_step - i_step + 1) * t_start + (qreal)(i_step - 1) * t_stop) / | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:61:9: note: ‘t_stop’ was declared here 61 | qreal t_stop; | ^~~~~~ AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 79%] Built target BondCentric_autogen /usr/bin/gmake -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/DependInfo.cmake "--color=" [ 79%] Automatic MOC for target Editor cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenInfo.json Release gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoGen: Refreshing parse cache because it doesn't exist. /usr/bin/gmake -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 80%] Automatic MOC for target Focus cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenInfo.json Release AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editor.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editortoolwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editor.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editortoolwidget.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/editor/EditorPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/editor/editor.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor/editor.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/editor/editortoolwidget.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor/editortoolwidget.h AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/focus/focus.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/focus/focus.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/focus/FocusPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/focus/focus.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus/focus.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/focus/FocusPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus/FocusPlugin.cpp [ 80%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/editor/EditorPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/EditorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/timestamp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp.d" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 80%] Built target Focus_autogen [ 80%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimmathutilities.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 80%] Built target Editor_autogen [ 80%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp: In member function ‘Avogadro::QtPlugins::QTAIMLSODAIntegrator::f(int, double, double*, double*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp:242:25: warning: ‘MEM[(double &)&gradient + 16]’ may be used uninitialized [-Wmaybe-uninitialized] 242 | ydot[3] = gradient(2) / normGradient; | ~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp:171:23: note: ‘MEM[(double &)&gradient + 16]’ was declared here 171 | Matrix gradient; | ^~~~~~~~ /usr/bin/gmake -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 80%] Automatic MOC for target LabelEditor cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/label/labeleditor.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/label/labeleditor.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/label/LabelEditorPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/label/labeleditor.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label/labeleditor.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/label/LabelEditorPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/LabelEditorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 80%] Built target LabelEditor_autogen /usr/bin/gmake -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 80%] Automatic MOC for target Manipulator cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/manipulator/manipulator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/manipulator/manipulator.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/manipulator/manipulator.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator/manipulator.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 80%] Built target Manipulator_autogen [ 80%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp /usr/bin/gmake -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 80%] Automatic MOC for target MeasureTool cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/measuretool/measuretool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/measuretool/measuretool.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/measuretool/measuretool.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp /usr/bin/gmake -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc.d" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp.d" [ 80%] Automatic MOC for target Navigator AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/deps" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/AutogenInfo.json Release AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/timestamp AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 80%] Built target MeasureTool_autogen AutoGen: Parsing "SRC:/avogadro/qtplugins/navigator/navigator.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/navigator/navigator.h" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/navigator/navigator.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator/navigator.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp [ 81%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o -MF CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 81%] Built target Navigator_autogen /usr/bin/gmake -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 81%] Automatic MOC for target PlayerTool cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/playertool/playertool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/playertool/playertool.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/playertool/playertool.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool/playertool.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 81%] Built target PlayerTool_autogen /usr/bin/gmake -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 81%] Automatic MOC for target ResetView cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/resetview/resetview.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/resetview/resetview.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/resetview/resetview.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview/resetview.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 81%] Built target ResetView_autogen /usr/bin/gmake -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 82%] Automatic MOC for target Selection cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontool.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/selectiontool/selectiontool.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.h /usr/bin/gmake -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 82%] Automatic MOC for target Surfaces cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfacedialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfaces.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfacedialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfaces.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h" /usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.h" /usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/slatersetconcurrent.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/surfacedialog.h" /usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfacedialog.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/surfaces.h" /usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfaces.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 82%] Built target Selection_autogen /usr/bin/gmake -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 82%] Automatic MOC for target TemplateTool cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/templatetool/templatetool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/templatetool/templatetool.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/templatetool/templatetoolwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/templatetool/templatetoolwidget.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateToolPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/templatetool/templatetool.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetool.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetoolwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/templatetool/templatetoolwidget.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetoolwidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 82%] Built target Surfaces_autogen /usr/bin/gmake -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 82%] Automatic MOC for target apbs cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbs.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/opendxreader.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbs.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/opendxreader.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/apbs/apbsPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbsdialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbsdialog.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbs.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbs.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetoolwidget.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include/TemplateToolPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateToolPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include/TemplateToolPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateToolPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbsoutputdialog.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetool.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/apbs/apbsPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/apbsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include/TemplateToolPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 82%] Built target TemplateTool_autogen /usr/bin/gmake -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 82%] Automatic MOC for target Cp2kInput cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinput.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 82%] Built target apbs_autogen /usr/bin/gmake -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 82%] Automatic MOC for target GamessInput cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinput.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamesshighlighter.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamessinput.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinput.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 82%] Built target Cp2kInput_autogen /usr/bin/gmake -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 82%] Automatic MOC for target SVG cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/svg/svg.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/svg/svg.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/svg/SVGPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/svg/svg.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/svg/SVGPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg/SVGPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp.d" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 82%] Built target GamessInput_autogen /usr/bin/gmake -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 82%] Automatic MOC for target QuantumInput cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/quantuminput/quantuminput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/quantuminput/quantuminput.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/quantuminput/quantuminput.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput/quantuminput.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 82%] Built target QuantumInput_autogen /usr/bin/gmake -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/svg/SVG_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/svg/SVG_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenUsed.txt" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg/SVG_autogen/timestamp gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 82%] Automatic MOC for target OverlayAxes gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenInfo.json Release [ 82%] Built target SVG_autogen AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include /usr/bin/gmake -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 82%] Generating qrc_aligntool.cpp AutoGen: Parsing "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.cpp" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.h AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc", because it doesn't exist, from "SRC:/redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool && /usr/lib/qt5/bin/rcc --name aligntool --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool/qrc_aligntool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.qrc cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 82%] Building CXX object avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/AlignTool_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool/AlignTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/AlignTool_autogen/mocs_compilation.cpp.o -MF CMakeFiles/AlignTool.dir/AlignTool_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/AlignTool.dir/AlignTool_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool/AlignTool_autogen/mocs_compilation.cpp AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 82%] Built target OverlayAxes_autogen [ 82%] Building CXX object avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/aligntool.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool/AlignTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/aligntool.cpp.o -MF CMakeFiles/AlignTool.dir/aligntool.cpp.o.d -o CMakeFiles/AlignTool.dir/aligntool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp [ 82%] Building CXX object avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/qrc_aligntool.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool/AlignTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/qrc_aligntool.cpp.o -MF CMakeFiles/AlignTool.dir/qrc_aligntool.cpp.o.d -o CMakeFiles/AlignTool.dir/qrc_aligntool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool/qrc_aligntool.cpp /usr/bin/gmake -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 82%] Generating qrc_bondcentrictool.cpp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool && /usr/lib/qt5/bin/rcc --name bondcentrictool --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/qrc_bondcentrictool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.qrc cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 83%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o -MF CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/mocs_compilation.cpp /usr/bin/gmake -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 83%] Generating ui_editortoolwidget.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/ui_editortoolwidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor/editortoolwidget.ui [ 83%] Generating qrc_editor.cpp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor && /usr/lib/qt5/bin/rcc --name editor --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/qrc_editor.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor/editor.qrc cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/CMakeFiles/Editor.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 83%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/mocs_compilation.cpp [ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/QTAIMExtension.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim && /usr/bin/cmake -P CMakeFiles/QTAIMExtension.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/QTAIMExtension.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/QTAIMExtension.a CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/QTAIMExtension.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 83%] Built target QTAIMExtension [ 83%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editor.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editor.cpp.o -MF CMakeFiles/Editor.dir/editor.cpp.o.d -o CMakeFiles/Editor.dir/editor.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor/editor.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.h: In constructor ‘Avogadro::QtPlugins::AlignTool::AlignTool(QObject*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.h:89:20: warning: ‘Avogadro::QtPlugins::AlignTool::m_toolWidget’ will be initialized after [-Wreorder] 89 | mutable QWidget* m_toolWidget; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.h:83:26: warning: ‘Avogadro::Rendering::GLRenderer* Avogadro::QtPlugins::AlignTool::m_renderer’ [-Wreorder] 83 | Rendering::GLRenderer* m_renderer; | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:48:1: warning: when initialized here [-Wreorder] 48 | AlignTool::AlignTool(QObject* parent_) | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.h:87:7: warning: ‘Avogadro::QtPlugins::AlignTool::m_alignType’ will be initialized after [-Wreorder] 87 | int m_alignType; | ^~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.h:86:7: warning: ‘int Avogadro::QtPlugins::AlignTool::m_axis’ [-Wreorder] 86 | int m_axis; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:48:1: warning: when initialized here [-Wreorder] 48 | AlignTool::AlignTool(QObject* parent_) | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘void Avogadro::QtPlugins::AlignTool::alignAtomToAxis(Avogadro::Index, int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:167:11: warning: variable ‘align’ set but not used [-Wunused-but-set-variable] 167 | Vector3 align = m_molecule->atom(atomIndex).position3d(); | ^~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:171:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 171 | double alpha, beta, gamma; | ^~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:11, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:14, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:15, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.h:11: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned int, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned int, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned int, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::AlignTool::shiftAtomToOrigin(unsigned int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:156:47: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.481790].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::shiftAtomToOrigin(unsigned int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:156:47: note: ‘’ declared here 156 | Core::Array newCoords(coords.size()); | ^ In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘QVector >::QVector(int, Eigen::Matrix const&)’ at /usr/include/qt5/QtCore/qvector.h:528:13, inlined from ‘QVector >::QVector(int, Eigen::Matrix const&)’ at /usr/include/qt5/QtCore/qvector.h:519:1, inlined from ‘Avogadro::QtPlugins::AlignTool::draw(Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:280:55: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.483464].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::draw(Avogadro::Rendering::GroupNode&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:280:54: note: ‘’ declared here 280 | QVector positions(m_atoms.size(), Vector3()); | ^ [ 83%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editortoolwidget.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editortoolwidget.cpp.o -MF CMakeFiles/Editor.dir/editortoolwidget.cpp.o.d -o CMakeFiles/Editor.dir/editortoolwidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor/editortoolwidget.cpp In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned int, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned int, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned int, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned int, int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:169:47: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.481815].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned int, int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:169:47: note: ‘’ declared here 169 | Core::Array newCoords(coords.size()); | ^ In file included from /usr/include/eigen3/Eigen/Geometry:36, from /usr/include/eigen3/Eigen/Dense:6: In member function ‘Eigen::MatrixBase >::cross >(Eigen::MatrixBase > const&) constEigen::MatrixBase >::cross_product_return_type >::type’, inlined from ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned int, int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:189:32: /usr/include/eigen3/Eigen/src/Geometry/OrthoMethods.h:47:31: warning: ‘MEM[(const Scalar &)&axisVector]’ may be used uninitialized [-Wmaybe-uninitialized] 47 | numext::conj(lhs.coeff(0) * rhs.coeff(1) - lhs.coeff(1) * rhs.coeff(0)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned int, int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:176:11: note: ‘axisVector’ declared here 176 | Vector3 axisVector; | ^~~~~~~~~~ In member function ‘Eigen::MatrixBase >::cross >(Eigen::MatrixBase > const&) constEigen::MatrixBase >::cross_product_return_type >::type’, inlined from ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned int, int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:189:32: /usr/include/eigen3/Eigen/src/Geometry/OrthoMethods.h:47:61: warning: ‘MEM[(const Scalar &)&axisVector + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 47 | numext::conj(lhs.coeff(0) * rhs.coeff(1) - lhs.coeff(1) * rhs.coeff(0)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned int, int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:176:11: note: ‘axisVector’ declared here 176 | Vector3 axisVector; | ^~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/src/Core/util/ConfigureVectorization.h:346, from /usr/include/eigen3/Eigen/Core:22: In function ‘_mm_loadu_pd’, inlined from ‘Eigen::internal::ploadu(Eigen::internal::unpacket_traits::type const*)double __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/arch/SSE/PacketMath.h:746:22, inlined from ‘Eigen::internal::ploadt(Eigen::internal::unpacket_traits::type const*)double __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:969:26, inlined from ‘Eigen::internal::evaluator > >::packet<0, double __vector(2)>(int, int) constdouble __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:238:42, inlined from ‘Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::packet<0, double __vector(2)>(int, int) constdouble __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:782:80, inlined from ‘Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> >::packetByOuterInner<0, double __vector(2)>(int, int) constdouble __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:386:54, inlined from ‘Eigen::internal::redux_vec_unroller, Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> >, 0, 1>::run(Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> > const&, Eigen::internal::scalar_sum_op const&)double __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:177:66, inlined from ‘Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> >, 3, 2>::run, Eigen::Matrix const, Eigen::Matrix const> >(Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const&)double’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:344:115, inlined from ‘Eigen::DenseBase, Eigen::Matrix const, Eigen::Matrix const> >::redux >(Eigen::internal::scalar_sum_op const&) constdouble’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from ‘Eigen::DenseBase, Eigen::Matrix const, Eigen::Matrix const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from ‘Eigen::internal::dot_nocheck, Eigen::Matrix, false>::run(Eigen::MatrixBase > const&, Eigen::MatrixBase > const&)’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:37:51, inlined from ‘Eigen::MatrixBase >::dot >(Eigen::MatrixBase > const&) constEigen::ScalarBinaryOpTraits >::Scalar, Eigen::internal::scalar_product_op >::Scalar> >::ReturnType’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:84:58, inlined from ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned int, int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:186:22: /usr/lib/gcc/i686-redhat-linux/15/include/emmintrin.h:135:24: warning: ‘MEM[(__m128d_u * {ref-all})&axisVector]’ may be used uninitialized [-Wmaybe-uninitialized] 135 | return *(__m128d_u *)__P; | ^~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned int, int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:176:11: note: ‘axisVector’ declared here 176 | Vector3 axisVector; | ^~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: In function ‘Eigen::internal::pmul(double const&, double const&)double’, inlined from ‘Eigen::internal::conj_helper::pmul(double const&, double const&) const’ at /usr/include/eigen3/Eigen/src/Core/arch/Default/ConjHelper.h:99:33, inlined from ‘Eigen::internal::scalar_conj_product_op::operator()(double const&, double const&) const’ at /usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:118:62, inlined from ‘Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::coeff(int, int) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22, inlined from ‘Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> >::coeffByOuterInner(int, int) const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> >, 2, 1>::run(Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from ‘Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> >, 3, 2>::run, Eigen::Matrix const, Eigen::Matrix const> >(Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const&)double’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:346:103, inlined from ‘Eigen::DenseBase, Eigen::Matrix const, Eigen::Matrix const> >::redux >(Eigen::internal::scalar_sum_op const&) constdouble’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from ‘Eigen::DenseBase, Eigen::Matrix const, Eigen::Matrix const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from ‘Eigen::internal::dot_nocheck, Eigen::Matrix, false>::run(Eigen::MatrixBase > const&, Eigen::MatrixBase > const&)’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:37:51, inlined from ‘Eigen::MatrixBase >::dot >(Eigen::MatrixBase > const&) constEigen::ScalarBinaryOpTraits >::Scalar, Eigen::internal::scalar_product_op >::Scalar> >::ReturnType’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:84:58, inlined from ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned int, int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:186:22: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:237:51: warning: ‘MEM[(double &)&axisVector + 16]’ may be used uninitialized [-Wmaybe-uninitialized] 237 | pmul(const Packet& a, const Packet& b) { return a*b; } | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned int, int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:176:11: note: ‘MEM[(double &)&axisVector + 16]’ was declared here 176 | Vector3 axisVector; | ^~~~~~~~~~ [ 83%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o -MF CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o.d -o CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp [ 83%] Building CXX object avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/AlignToolPlugin.cpp.o cd 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/AlignToolPlugin.cpp.o -MF CMakeFiles/AlignTool.dir/AlignToolPlugin.cpp.o.d -o CMakeFiles/AlignTool.dir/AlignToolPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool/AlignToolPlugin.cpp [ 83%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o -MF CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o.d -o CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/qrc_bondcentrictool.cpp /usr/bin/gmake -f avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 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/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/focus/CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/mocs_compilation.cpp [ 84%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/qrc_editor.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/qrc_editor.cpp.o -MF CMakeFiles/Editor.dir/qrc_editor.cpp.o.d -o CMakeFiles/Editor.dir/qrc_editor.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/qrc_editor.cpp [ 84%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/EditorPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/EditorPlugin.cpp.o -MF CMakeFiles/Editor.dir/EditorPlugin.cpp.o.d -o CMakeFiles/Editor.dir/EditorPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/EditorPlugin.cpp [ 84%] Linking CXX static library ../../../lib/avogadro2/staticplugins/AlignTool.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool && /usr/bin/cmake -P CMakeFiles/AlignTool.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool && /usr/bin/cmake -E cmake_link_script CMakeFiles/AlignTool.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/AlignTool.a CMakeFiles/AlignTool.dir/AlignTool_autogen/mocs_compilation.cpp.o CMakeFiles/AlignTool.dir/aligntool.cpp.o CMakeFiles/AlignTool.dir/qrc_aligntool.cpp.o CMakeFiles/AlignTool.dir/AlignToolPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/AlignTool.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 84%] Built target AlignTool [ 84%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o -MF CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o.d -o CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp [ 84%] Building CXX object avogadro/qtplugins/focus/CMakeFiles/Focus.dir/focus.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/focus/CMakeFiles/Focus.dir/focus.cpp.o -MF CMakeFiles/Focus.dir/focus.cpp.o.d -o CMakeFiles/Focus.dir/focus.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus/focus.cpp [ 84%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Editor.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor && /usr/bin/cmake -P CMakeFiles/Editor.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Editor.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Editor.a CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o CMakeFiles/Editor.dir/editor.cpp.o CMakeFiles/Editor.dir/editortoolwidget.cpp.o CMakeFiles/Editor.dir/qrc_editor.cpp.o CMakeFiles/Editor.dir/EditorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Editor.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 84%] Built target Editor [ 84%] Building CXX object avogadro/qtplugins/focus/CMakeFiles/Focus.dir/FocusPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/focus/CMakeFiles/Focus.dir/FocusPlugin.cpp.o -MF CMakeFiles/Focus.dir/FocusPlugin.cpp.o.d -o CMakeFiles/Focus.dir/FocusPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus/FocusPlugin.cpp /usr/bin/gmake -f avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 85%] Generating qrc_label.cpp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label && /usr/lib/qt5/bin/rcc --name label --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/qrc_label.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label/label.qrc cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 85%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/mocs_compilation.cpp /usr/bin/gmake -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 85%] Generating ui_manipulatewidget.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/ui_manipulatewidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator/manipulatewidget.ui [ 85%] Generating qrc_manipulator.cpp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator && /usr/lib/qt5/bin/rcc --name manipulator --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/qrc_manipulator.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator/manipulator.qrc cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 85%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/mocs_compilation.cpp [ 85%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Focus.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus && /usr/bin/cmake -P CMakeFiles/Focus.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus && /usr/bin/cmake -E cmake_link_script CMakeFiles/Focus.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Focus.a CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o CMakeFiles/Focus.dir/focus.cpp.o CMakeFiles/Focus.dir/FocusPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Focus.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 85%] Built target Focus [ 85%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/manipulator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/manipulator.cpp.o -MF CMakeFiles/Manipulator.dir/manipulator.cpp.o.d -o CMakeFiles/Manipulator.dir/manipulator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator/manipulator.cpp [ 85%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o -MF CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o.d -o CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/qrc_manipulator.cpp [ 85%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/labeleditor.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/labeleditor.cpp.o -MF 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/qrc_label.cpp.o -MF CMakeFiles/LabelEditor.dir/qrc_label.cpp.o.d -o CMakeFiles/LabelEditor.dir/qrc_label.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/qrc_label.cpp /usr/bin/gmake -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 85%] Generating qrc_measuretool.cpp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool && /usr/lib/qt5/bin/rcc --name measuretool --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool/qrc_measuretool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.qrc cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 85%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o -MF CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/mocs_compilation.cpp [ 85%] Linking CXX static library ../../../lib/avogadro2/staticplugins/BondCentric.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -P 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&& /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/measuretool.cpp.o -MF CMakeFiles/MeasureTool.dir/measuretool.cpp.o.d -o CMakeFiles/MeasureTool.dir/measuretool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.cpp [ 85%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o -MF CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o.d -o CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool/qrc_measuretool.cpp [ 86%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o -MF CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o.d -o CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp [ 86%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o -MF CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o.d -o CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/LabelEditorPlugin.cpp /usr/bin/gmake -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 86%] Generating qrc_navigator.cpp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator && /usr/lib/qt5/bin/rcc --name navigator --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator/qrc_navigator.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator/navigator.qrc cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 86%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/mocs_compilation.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometrynode.h:11, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.cpp:11: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘QVector >::QVector(int, Eigen::Matrix const&)’ at /usr/include/qt5/QtCore/qvector.h:528:13, inlined from ‘QVector >::QVector(int, Eigen::Matrix const&)’ at /usr/include/qt5/QtCore/qvector.h:519:1, inlined from ‘Avogadro::QtPlugins::MeasureTool::draw(Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.cpp:165:55: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.477585].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.cpp: In member function ‘Avogadro::QtPlugins::MeasureTool::draw(Avogadro::Rendering::GroupNode&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.cpp:165:54: note: ‘’ declared here 165 | QVector positions(m_atoms.size(), Vector3()); | ^ [ 86%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Manipulator.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator && /usr/bin/cmake -P CMakeFiles/Manipulator.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_link_script CMakeFiles/Manipulator.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Manipulator.a CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o CMakeFiles/Manipulator.dir/manipulator.cpp.o CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Manipulator.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 86%] Built target Manipulator [ 86%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/navigator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/navigator.cpp.o -MF CMakeFiles/Navigator.dir/navigator.cpp.o.d -o CMakeFiles/Navigator.dir/navigator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator/navigator.cpp [ 87%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o -MF CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o.d -o CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp /usr/bin/gmake -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 87%] Generating qrc_playertool.cpp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool && /usr/lib/qt5/bin/rcc --name playertool --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool/qrc_playertool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool/playertool.qrc cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 87%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/playertool.cpp.o -MF CMakeFiles/PlayerTool.dir/playertool.cpp.o.d -o CMakeFiles/PlayerTool.dir/playertool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool/playertool.cpp [ 87%] Linking CXX static library ../../../lib/avogadro2/staticplugins/LabelEditor.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label && /usr/bin/cmake -P CMakeFiles/LabelEditor.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_link_script CMakeFiles/LabelEditor.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/LabelEditor.a CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o 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-DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o -MF CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o.d -o CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool/qrc_playertool.cpp [ 87%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/qrc_navigator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/qrc_navigator.cpp.o -MF CMakeFiles/Navigator.dir/qrc_navigator.cpp.o.d -o CMakeFiles/Navigator.dir/qrc_navigator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator/qrc_navigator.cpp /usr/bin/gmake -f avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 87%] Building CXX object avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API 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--verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/MeasureTool.a CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o CMakeFiles/MeasureTool.dir/measuretool.cpp.o CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/MeasureTool.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 87%] Built target MeasureTool [ 87%] Building CXX object avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/resetview.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/resetview.cpp.o -MF CMakeFiles/ResetView.dir/resetview.cpp.o.d -o CMakeFiles/ResetView.dir/resetview.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview/resetview.cpp [ 87%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o -MF CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o.d -o CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp [ 87%] Building CXX object avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o -MF CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o.d -o CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp [ 88%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Navigator.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator && /usr/bin/cmake -P CMakeFiles/Navigator.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_link_script CMakeFiles/Navigator.dir/link.txt --verbose=1 [ 88%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o -MF CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o.d -o CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Navigator.a CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o CMakeFiles/Navigator.dir/navigator.cpp.o CMakeFiles/Navigator.dir/qrc_navigator.cpp.o CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Navigator.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 88%] Built target Navigator /usr/bin/gmake -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 88%] Generating ui_selectiontoolwidget.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/ui_selectiontoolwidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.ui /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.ui: Warning: The name 'label' (QLabel) is already in use, defaulting to 'label1'. [ 88%] Generating qrc_selectiontool.cpp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool && /usr/lib/qt5/bin/rcc --name selectiontool --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/qrc_selectiontool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.qrc cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 89%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/mocs_compilation.cpp [ 89%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontool.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontool.cpp.o -MF CMakeFiles/Selection.dir/selectiontool.cpp.o.d -o CMakeFiles/Selection.dir/selectiontool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.cpp [ 90%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PlayerTool.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool && /usr/bin/cmake -P CMakeFiles/PlayerTool.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_link_script CMakeFiles/PlayerTool.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PlayerTool.a CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o CMakeFiles/PlayerTool.dir/playertool.cpp.o CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PlayerTool.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 90%] Built target PlayerTool [ 90%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o -MF CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o.d -o CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp /usr/bin/gmake -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 90%] Generating ui_surfacedialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/ui_surfacedialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfacedialog.ui cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 91%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -isystem /usr/include/qt5/QtConcurrent -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/mocs_compilation.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp: In member function ‘void Avogadro::QtPlugins::SelectionToolWidget::setDropDown(size_t, size_t)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp:36:15: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 36 | if (current != m_ui->changeLayerDropDown->currentIndex()) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -isystem /usr/include/qt5/QtConcurrent -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o -MF CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o.d -o CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/gaussiansetconcurrent.cpp [ 91%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -isystem /usr/include/qt5/QtConcurrent -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o -MF CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o.d -o CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/slatersetconcurrent.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometrynode.h:11, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.h:13, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned int, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned int, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned int, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::SelectionTool::draw(Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:211:26: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.481844].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.cpp: In member function ‘Avogadro::QtPlugins::SelectionTool::draw(Avogadro::Rendering::GroupNode&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:211:26: note: ‘’ declared here 211 | Array verts(4); | ^ [ 91%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o -MF CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o.d -o CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/qrc_selectiontool.cpp [ 91%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/SelectionPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/SelectionPlugin.cpp.o -MF CMakeFiles/Selection.dir/SelectionPlugin.cpp.o.d -o CMakeFiles/Selection.dir/SelectionPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp [ 91%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfacedialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -isystem /usr/include/qt5/QtConcurrent -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfacedialog.cpp.o -MF CMakeFiles/Surfaces.dir/surfacedialog.cpp.o.d -o CMakeFiles/Surfaces.dir/surfacedialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfacedialog.cpp /usr/bin/gmake -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 91%] Generating ui_templatetoolwidget.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/ui_templatetoolwidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.ui [ 91%] Generating qrc_template.cpp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool && /usr/lib/qt5/bin/rcc --name template --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/qrc_template.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/template.qrc cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 91%] Building CXX object avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/TemplateTool_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/TemplateTool_autogen/mocs_compilation.cpp.o -MF CMakeFiles/TemplateTool.dir/TemplateTool_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/TemplateTool.dir/TemplateTool_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/mocs_compilation.cpp [ 91%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Selection.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -P CMakeFiles/Selection.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Selection.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Selection.a CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o CMakeFiles/Selection.dir/selectiontool.cpp.o CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o CMakeFiles/Selection.dir/SelectionPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Selection.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 91%] Built target Selection [ 91%] Building CXX object avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/templatetool.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/templatetool.cpp.o -MF CMakeFiles/TemplateTool.dir/templatetool.cpp.o.d -o CMakeFiles/TemplateTool.dir/templatetool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetool.cpp [ 91%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfaces.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -isystem /usr/include/qt5/QtConcurrent -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfaces.cpp.o -MF CMakeFiles/Surfaces.dir/surfaces.cpp.o.d -o CMakeFiles/Surfaces.dir/surfaces.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfaces.cpp /usr/bin/gmake -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 91%] Generating ui_apbsoutputdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/ui_apbsoutputdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbsoutputdialog.ui [ 91%] Generating ui_apbsdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/ui_apbsdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbsdialog.ui cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 91%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o -MF CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/mocs_compilation.cpp [ 91%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs.cpp.o -MF CMakeFiles/apbs.dir/apbs.cpp.o.d -o CMakeFiles/apbs.dir/apbs.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbs.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/matrix.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemanager.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfaces.cpp:19: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned int, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned int, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned int, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::Surfaces::colorMeshByPotential()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfaces.cpp:799:51: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.508998].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfaces.cpp: In member function ‘Avogadro::QtPlugins::Surfaces::colorMeshByPotential()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfaces.cpp:799:51: note: ‘’ declared here 799 | Core::Array positions(positionsf.size()); | ^ [ 92%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsdialog.cpp.o -MF CMakeFiles/apbs.dir/apbsdialog.cpp.o.d -o CMakeFiles/apbs.dir/apbsdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbsdialog.cpp [ 92%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -isystem /usr/include/qt5/QtConcurrent -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o -MF CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o.d -o CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp [ 93%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Surfaces.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces && /usr/bin/cmake -P CMakeFiles/Surfaces.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/Surfaces.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Surfaces.a CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o CMakeFiles/Surfaces.dir/surfacedialog.cpp.o CMakeFiles/Surfaces.dir/surfaces.cpp.o CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Surfaces.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 93%] Built target Surfaces [ 93%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o -MF CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o.d -o CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbsoutputdialog.cpp [ 94%] Building CXX object avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o -MF CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o.d -o CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.h: In constructor ‘Avogadro::QtPlugins::TemplateToolWidget::TemplateToolWidget(QWidget*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.h:68:29: warning: ‘Avogadro::QtPlugins::TemplateToolWidget::m_elementSelector’ will be initialized after [-Wreorder] 68 | QtGui::PeriodicTableView* m_elementSelector; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.h:67:32: warning: ‘Avogadro::QtGui::InsertFragmentDialog* Avogadro::QtPlugins::TemplateToolWidget::m_fragmentDialog’ [-Wreorder] 67 | QtGui::InsertFragmentDialog* m_fragmentDialog; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.cpp:48:1: warning: when initialized here [-Wreorder] 48 | TemplateToolWidget::TemplateToolWidget(QWidget* parent_) | ^~~~~~~~~~~~~~~~~~ [ 95%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ResetView.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview && /usr/bin/cmake -P CMakeFiles/ResetView.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview && /usr/bin/cmake -E cmake_link_script CMakeFiles/ResetView.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ResetView.a CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o CMakeFiles/ResetView.dir/resetview.cpp.o CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ResetView.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 95%] Built target ResetView [ 95%] Building CXX object avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/qrc_template.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/qrc_template.cpp.o -MF CMakeFiles/TemplateTool.dir/qrc_template.cpp.o.d -o CMakeFiles/TemplateTool.dir/qrc_template.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/qrc_template.cpp [ 95%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/opendxreader.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/opendxreader.cpp.o -MF CMakeFiles/apbs.dir/opendxreader.cpp.o.d -o CMakeFiles/apbs.dir/opendxreader.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/opendxreader.cpp [ 95%] Building CXX object avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o -MF CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o.d -o CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateToolPlugin.cpp [ 95%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsPlugin.cpp.o -MF CMakeFiles/apbs.dir/apbsPlugin.cpp.o.d -o CMakeFiles/apbs.dir/apbsPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/apbsPlugin.cpp /usr/bin/gmake -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 95%] Generating ui_cp2kinputdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput/ui_cp2kinputdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.ui cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 95%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/mocs_compilation.cpp [ 95%] Linking CXX static library ../../../lib/avogadro2/staticplugins/apbs.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs && /usr/bin/cmake -P CMakeFiles/apbs.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/apbs.a CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o CMakeFiles/apbs.dir/apbs.cpp.o CMakeFiles/apbs.dir/apbsdialog.cpp.o CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o CMakeFiles/apbs.dir/opendxreader.cpp.o CMakeFiles/apbs.dir/apbsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/apbs.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 95%] Built target apbs [ 95%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o -MF CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o.d -o CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp [ 96%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o -MF CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o.d -o CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinput.cpp /usr/bin/gmake -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 96%] Generating ui_gamessinputdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/ui_gamessinputdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinputdialog.ui cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 96%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io 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-fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/mocs_compilation.cpp [ 96%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput 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-MF CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o.d -o CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp [ 97%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o -MF CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o.d -o CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamesshighlighter.cpp [ 97%] Linking CXX static library ../../../lib/avogadro2/staticplugins/TemplateTool.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool && /usr/bin/cmake -P CMakeFiles/TemplateTool.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool && /usr/bin/cmake -E cmake_link_script CMakeFiles/TemplateTool.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/TemplateTool.a CMakeFiles/TemplateTool.dir/TemplateTool_autogen/mocs_compilation.cpp.o CMakeFiles/TemplateTool.dir/templatetool.cpp.o CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o CMakeFiles/TemplateTool.dir/qrc_template.cpp.o CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/TemplateTool.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 97%] Built target TemplateTool [ 97%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o -MF CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o.d -o CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp /usr/bin/gmake -f avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake 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avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg/SVG_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtSvg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o -MF CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg/SVG_autogen/mocs_compilation.cpp [ 97%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinput.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinput.cpp.o -MF CMakeFiles/GamessInput.dir/gamessinput.cpp.o.d -o CMakeFiles/GamessInput.dir/gamessinput.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinput.cpp [ 97%] Building CXX object avogadro/qtplugins/svg/CMakeFiles/SVG.dir/svg.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg/SVG_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtSvg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/svg.cpp.o -MF CMakeFiles/SVG.dir/svg.cpp.o.d -o CMakeFiles/SVG.dir/svg.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp [ 97%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Cp2kInput.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -P CMakeFiles/Cp2kInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/Cp2kInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Cp2kInput.a CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Cp2kInput.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 97%] Built target Cp2kInput [ 97%] Building CXX object avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVGPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg/SVG_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtSvg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVGPlugin.cpp.o -MF CMakeFiles/SVG.dir/SVGPlugin.cpp.o.d -o CMakeFiles/SVG.dir/SVGPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg/SVGPlugin.cpp [ 97%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o -MF CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o.d -o CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp /usr/bin/gmake -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 97%] Building CXX object avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/mocs_compilation.cpp [ 98%] Building CXX object avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/quantuminput.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/quantuminput.cpp.o -MF CMakeFiles/QuantumInput.dir/quantuminput.cpp.o.d -o CMakeFiles/QuantumInput.dir/quantuminput.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput/quantuminput.cpp [ 98%] Linking CXX static library ../../../lib/avogadro2/staticplugins/GamessInput.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -P CMakeFiles/GamessInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/GamessInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/GamessInput.a CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o CMakeFiles/GamessInput.dir/gamessinput.cpp.o CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/GamessInput.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 98%] Built target GamessInput [ 98%] Building CXX object avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o -MF CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o.d -o CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp /usr/bin/gmake -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 98%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/mocs_compilation.cpp [ 99%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o -MF CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o.d -o CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘Avogadro::QtPlugins::SVG::SVGAtom::SVGAtom(Avogadro::QtPlugins::SVG::SVGAtom const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.h:47:10, inlined from ‘std::__new_allocator::construct(Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::QtPlugins::SVG::SVGAtom const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::QtPlugins::SVG::getPositions()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp:154:22: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&atom + 24].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp: In member function ‘Avogadro::QtPlugins::SVG::getPositions()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp:152:13: note: ‘atom’ declared here 152 | SVGAtom atom(atomPositions[i].cast(), pos, i, | ^~~~ In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘Avogadro::QtPlugins::SVG::SVGAtom::SVGAtom(Avogadro::QtPlugins::SVG::SVGAtom const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.h:47:10, inlined from ‘std::__new_allocator::construct(Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::_M_realloc_append(Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/15/bits/vector.tcc:586:26, inlined from ‘std::vector >::push_back(Avogadro::QtPlugins::SVG::SVGAtom const&)’ at /usr/include/c++/15/bits/stl_vector.h:1427:21, inlined from ‘Avogadro::QtPlugins::SVG::getPositions()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp:154:22: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&atom + 24].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp: In member function ‘Avogadro::QtPlugins::SVG::getPositions()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp:152:13: note: ‘atom’ declared here 152 | SVGAtom atom(atomPositions[i].cast(), pos, i, | ^~~~ In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput/quantuminput.cpp:11: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/avogadropython.h:2:20: warning: ‘Avogadro::pythonInterpreterPath’ defined but not used [-Wunused-variable] 2 | static const char *pythonInterpreterPath = "/usr/bin/python3"; | ^~~~~~~~~~~~~~~~~~~~~ [ 99%] Linking CXX static library ../../../lib/avogadro2/staticplugins/SVG.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg && /usr/bin/cmake -P CMakeFiles/SVG.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg && /usr/bin/cmake -E cmake_link_script CMakeFiles/SVG.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/SVG.a CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o CMakeFiles/SVG.dir/svg.cpp.o CMakeFiles/SVG.dir/SVGPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/SVG.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 99%] Built target SVG [ 99%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o -MF CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o.d -o CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp [ 99%] Linking CXX static library ../../../lib/avogadro2/staticplugins/QuantumInput.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -P CMakeFiles/QuantumInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/QuantumInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/QuantumInput.a CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o CMakeFiles/QuantumInput.dir/quantuminput.cpp.o CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/QuantumInput.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 99%] Built target QuantumInput In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:11, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:14, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:15, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned int, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned int, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned int, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:145:39: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.467027].m_storage’ is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp: In member function ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:145:39: note: ‘’ declared here 145 | Array vertices(numVertices); | ^ In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned int, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned int, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned int, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned int, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned int, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned int, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:146:38: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.467029].m_storage’ is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp: In member function ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:146:38: note: ‘’ declared here 146 | Array normals(numVertices); | ^ [ 99%] Linking CXX static library ../../../lib/avogadro2/staticplugins/OverlayAxes.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -P CMakeFiles/OverlayAxes.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_link_script CMakeFiles/OverlayAxes.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/OverlayAxes.a CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OverlayAxes.a gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 99%] Built target OverlayAxes /usr/bin/gmake -f avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' gmake[2]: Nothing to be done for 'avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 99%] Built target QtPlugins_autogen_timestamp_deps /usr/bin/gmake -f avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 99%] Automatic MOC for target QtPlugins cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/QtPlugins_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtPlugins_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/qt5 -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/eigen3 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/pluginfactory.h" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/avogadroqtpluginsexport.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/pluginmanager.h" AutoGen: Parsing "SRC:/redhat-linux-build/avogadro/qtplugins/avogadrostaticqtplugins.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/pluginmanager.cpp" AutoMoc: Generating "SRC:/redhat-linux-build/avogadro/qtplugins/QtPlugins_autogen/EWIEGA46WW/moc_pluginmanager.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/pluginmanager.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtPlugins_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/usr/include/qt5 -I/usr/include/qt5/QtCore -I/usr/lib/qt5/mkspecs/linux-g++ -I/usr/include/eigen3 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/15 -I/usr/include/c++/15/i686-redhat-linux -I/usr/include/c++/15/backward -I/usr/lib/gcc/i686-redhat-linux/15/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/QtPlugins_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/QtPlugins_autogen/EWIEGA46WW/moc_pluginmanager.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/pluginmanager.h AutoMoc: Reading dependencies from "SRC:/redhat-linux-build/avogadro/qtplugins/QtPlugins_autogen/EWIEGA46WW/moc_pluginmanager.cpp.d" AutoMoc: Generating MOC compilation "SRC:/redhat-linux-build/avogadro/qtplugins/QtPlugins_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/redhat-linux-build/avogadro/qtplugins/QtPlugins_autogen/deps" AutoGen: Writing the parse cache file "SRC:/redhat-linux-build/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/redhat-linux-build/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/QtPlugins_autogen/timestamp gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 99%] Built target QtPlugins_autogen /usr/bin/gmake -f avogadro/qtplugins/CMakeFiles/QtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/CMakeFiles/QtPlugins.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f avogadro/qtplugins/CMakeFiles/QtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [ 99%] Building CXX object avogadro/qtplugins/CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o [ 99%] Building CXX object avogadro/qtplugins/CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtPlugins_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/QtPlugins_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/eigen3 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/QtPlugins_autogen/mocs_compilation.cpp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtPlugins_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/QtPlugins_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/mkspecs/linux-g++ -isystem /usr/include/eigen3 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o -MF CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o.d -o CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/pluginmanager.cpp [100%] Linking CXX shared library ../../lib/libAvogadroQtPlugins.so cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins && /usr/bin/cmake -E cmake_link_script CMakeFiles/QtPlugins.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -Wl,--dependency-file=CMakeFiles/QtPlugins.dir/link.d -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQtPlugins.so.1 -o ../../lib/libAvogadroQtPlugins.so.1.99.0 CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/lib: ../../lib/avogadro2/staticplugins/ThreeDMol.a ../../lib/avogadro2/staticplugins/ApplyColors.a ../../lib/avogadro2/staticplugins/AlignTool.a ../../lib/avogadro2/staticplugins/BondCentric.a ../../lib/avogadro2/staticplugins/Bonding.a ../../lib/avogadro2/staticplugins/Cartoons.a ../../lib/avogadro2/staticplugins/Centroid.a ../../lib/avogadro2/staticplugins/ConfigurePython.a ../../lib/avogadro2/staticplugins/CopyPaste.a ../../lib/avogadro2/staticplugins/Crystal.a ../../lib/avogadro2/staticplugins/CrystalScene.a ../../lib/avogadro2/staticplugins/CustomElements.a ../../lib/avogadro2/staticplugins/Editor.a ../../lib/avogadro2/staticplugins/FetchPDB.a ../../lib/avogadro2/staticplugins/Focus.a ../../lib/avogadro2/staticplugins/Hydrogens.a ../../lib/avogadro2/staticplugins/ImportPQR.a ../../lib/avogadro2/staticplugins/NucleicInput.a ../../lib/avogadro2/staticplugins/Label.a ../../lib/avogadro2/staticplugins/LabelEditor.a ../../lib/avogadro2/staticplugins/LammpsInput.a ../../lib/avogadro2/staticplugins/LineFormatInput.a ../../lib/avogadro2/staticplugins/Manipulator.a ../../lib/avogadro2/staticplugins/MeasureTool.a ../../lib/avogadro2/staticplugins/Navigator.a ../../lib/avogadro2/staticplugins/NetworkDatabases.a ../../lib/avogadro2/staticplugins/OpenBabel.a ../../lib/avogadro2/staticplugins/OpenMMInput.a ../../lib/avogadro2/staticplugins/PlayerTool.a ../../lib/avogadro2/staticplugins/PLY.a ../../lib/avogadro2/staticplugins/POVRay.a ../../lib/avogadro2/staticplugins/PropertyTables.a ../../lib/avogadro2/staticplugins/ResetView.a ../../lib/avogadro2/staticplugins/Select.a ../../lib/avogadro2/staticplugins/Selection.a ../../lib/avogadro2/staticplugins/SpaceGroup.a ../../lib/avogadro2/staticplugins/Surfaces.a ../../lib/avogadro2/staticplugins/TemplateTool.a ../../lib/avogadro2/staticplugins/Vibrations.a ../../lib/avogadro2/staticplugins/VRML.a ../../lib/avogadro2/staticplugins/apbs.a ../../lib/avogadro2/staticplugins/CoordinateEditor.a ../../lib/avogadro2/staticplugins/Cp2kInput.a ../../lib/avogadro2/staticplugins/Forcefield.a ../../lib/avogadro2/staticplugins/GamessInput.a ../../lib/avogadro2/staticplugins/InsertFragment.a ../../lib/avogadro2/staticplugins/MolecularProperties.a ../../lib/avogadro2/staticplugins/SVG.a ../../lib/avogadro2/staticplugins/commands.a ../../lib/avogadro2/staticplugins/QuantumInput.a ../../lib/avogadro2/staticplugins/ScriptCharges.a ../../lib/avogadro2/staticplugins/ScriptFileFormats.a ../../lib/avogadro2/staticplugins/PluginDownloader.a ../../lib/avogadro2/staticplugins/BallStick.a ../../lib/avogadro2/staticplugins/CloseContacts.a ../../lib/avogadro2/staticplugins/Force.a ../../lib/avogadro2/staticplugins/Licorice.a ../../lib/avogadro2/staticplugins/Meshes.a ../../lib/avogadro2/staticplugins/NonCovalent.a ../../lib/avogadro2/staticplugins/VanDerWaals.a ../../lib/avogadro2/staticplugins/Wireframe.a ../../lib/avogadro2/staticplug/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:61:6: warning: type ‘Avogadro::QtPlugins::BasisOption’ violates the C++ One Definition Rule [-Wodr] 61 | enum BasisOption | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:59:6: note: an enum with different value name is defined in another translation unit 59 | enum BasisOption | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:63:3: note: name ‘BasisSZVGTH’ differs from name ‘BasisSTO3G’ defined in another translation unit 63 | BasisSZVGTH = 0, | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:61:3: note: mismatching definition 61 | BasisSTO3G = 0, | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:40:6: warning: type ‘Avogadro::QtPlugins::CalculateOption’ violates the C++ One Definition Rule [-Wodr] 40 | enum CalculateOption | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:37:6: note: an enum with different value name is defined in another translation unit 37 | enum CalculateOption | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:42:3: note: name ‘CalculateEnergy’ differs from name ‘CalculateSinglePoint’ defined in another translation unit 42 | CalculateEnergy = 0, | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:39:3: note: mismatching definition 39 | CalculateSinglePoint = 0, | ^ ins/OverlayAxes.a ../../lib/avogadro2/staticplugins/QTAIMExtension.a ../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a ../../lib/libAvogadroCalc.so.1.99.0 ../../thirdparty/libgwavi/libgwavi.a /usr/lib/libopenbabel.so /usr/lib/libQt5Svg.so.5.15.16 /usr/lib/libQt5Widgets.so.5.15.16 /usr/lib/libQt5Gui.so.5.15.16 ../../lib/libAvogadroMoleQueue.so.1.99.0 /usr/lib/libQt5Widgets.so.5.15.16 /usr/lib/libQt5Gui.so.5.15.16 /usr/lib/libQt5Network.so.5.15.16 /usr/lib/libQt5Core.so.5.15.16 ../../lib/libAvogadroQuantumIO.so.1.99.0 /usr/lib/libQt5Network.so.5.15.16 /usr/lib/libarchive.so ../../lib/libAvogadroQtOpenGL.so.1.99.0 /usr/lib/libQt5Widgets.so.5.15.16 /usr/lib/libQt5Gui.so.5.15.16 /usr/lib/libQt5Core.so.5.15.16 /usr/lib/libGLX.so /usr/lib/libOpenGL.so /usr/lib/libGLEW.so /usr/lib/libQt5Concurrent.so.5.15.16 /usr/lib/libQt5Core.so.5.15.16 ../../lib/libAvogadroQtGui.so.1.99.0 ../../lib/libAvogadroIO.so.1.99.0 /usr/lib/libQt5Widgets.so.5.15.16 /usr/lib/libQt5Gui.so.5.15.16 /usr/lib/libQt5Core.so.5.15.16 ../../lib/libAvogadroRendering.so.1.99.0 ../../lib/libAvogadroCore.so.1.99.0 cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtPlugins.so.1.99.0 ../../lib/libAvogadroQtPlugins.so.1 ../../lib/libAvogadroQtPlugins.so gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' [100%] Built target QtPlugins gmake[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles 0 + /usr/bin/cmake --build redhat-linux-build -j4 --verbose -t documentation Change Dir: '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4 documentation /usr/bin/cmake -S/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -B/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/gmake -f CMakeFiles/Makefile2 documentation gmake[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/cmake -S/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -B/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles 0 /usr/bin/gmake -f CMakeFiles/Makefile2 docs/CMakeFiles/documentation.dir/all gmake[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f docs/CMakeFiles/documentation.dir/build.make docs/CMakeFiles/documentation.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/docs /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/CMakeFiles/documentation.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/gmake -f docs/CMakeFiles/documentation.dir/build.make docs/CMakeFiles/documentation.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs && /usr/bin/cmake -E remove_directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/html cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs && /usr/bin/doxygen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile warning: Tag 'OUTPUT_TEXT_DIRECTION' at line 102 of file '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 1244 of file '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1549 of file '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1862 of file '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 1878 of file '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 1952 of file '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 2057 of file '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 2266 of file '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 2308 of file '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 2315 of file '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 2561 of file '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. warning: source 'images' is not a readable file or directory... skipping. Doxygen version used: 1.13.2 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for plantuml files... 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Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/command Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/icons Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/icons/colormap Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/icons/fallback Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/icons/fallback/32x32 Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/icons/fallback/64x64 Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/docs Reading and parsing tag files Parsing files Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemanager.h... 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Preprocessing /builddir/buil/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:177: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:188: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:38: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:42: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:84: warning: unbalanced grouping commands d/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjonesdata.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjonesdata.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angletools.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angletools.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper-inline.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper-inline.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomutilities.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomutilities.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/avogadrocore.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/avogadrocore.h... 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Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h... Preprocessing /builddir/build/BUILD/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:77: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:84: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:91: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:103: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:110: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:117: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:124: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:131: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:138: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:116: warning: unbalanced grouping commands /avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabel2d.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabel2d.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabel3d.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabel3d.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textrenderstrategy.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textrenderstrategy.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/transformnode.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/transformnode.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/volumegeometry.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/volumegeometry.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/qvtkwidget.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/qvtkwidget.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadro/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energycalculator.h:24: warning: Compound Avogadro::Calc::EnergyCalculator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:21: warning: Compound Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:23: warning: Compound Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:59: warning: Compound Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:48: warning: Compound Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:47: warning: Compound Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomutilities.h:20: warning: Compound Avogadro::Core::AtomUtilities is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:23: warning: Compound Avogadro::Core::BondTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:23: warning: Compound Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:88: warning: Compound Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:11: warning: Compound Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h:19: warning: Compound Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/secondarystructure.h:36: warning: Compound Avogadro::Core::SecondaryStructureAssigner is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/secondarystructure.h:22: warning: Compound Avogadro::Core::hBondRecord is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:22: warning: Compound Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h:32: warning: Compound Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/lammpsformat.h:57: warning: Compound Avogadro::Io::LammpsDataFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/vaspformat.h:51: warning: Compound Avogadro::Io::OutcarFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/elementdetail_p.h:24: warning: Compound Avogadro::QtGui::ElementDetail is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/elementitem_p.h:24: warning: Compound Avogadro::QtGui::ElementItem is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:20: warning: Compound Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/hydrogentools.h:21: warning: Compound Avogadro::QtGui::HydrogenTools is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:19: warning: Compound Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/periodictablescene_p.h:25: warning: Compound Avogadro::QtGui::PeriodicTableScene is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:671: warning: Compound Avogadro::QtGui::RWAtom is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:678: warning: Compound Avogadro::QtGui::RWBond is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:27: warning: Compound Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:37: warning: Compound Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.h:15: warning: Compound Avogadro::QtGui::SortFilterTreeProxyModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessus.h:18: warning: Compound Avogadro::QuantumIO::GAMESSUSOutput is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:77: warning: Compound Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussiancube.h:17: warning: Compound Avogadro::QuantumIO::GaussianCube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.h:20: warning: Compound Avogadro::QuantumIO::GaussianFchk is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/genericoutput.h:18: warning: Compound Avogadro::QuantumIO::GenericOutput is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/molden.h:18: warning: Compound Avogadro::QuantumIO::MoldenFile is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/mopacaux.h:19: warning: Compound Avogadro::QuantumIO::MopacAux is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemlog.h:19: warning: Compound Avogadro::QuantumIO::NWChemLog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.h:20: warning: Compound Avogadro::QuantumIO::ORCAOutput is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h:14: warning: Compound Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/beziergeometry.h:14: warning: Compound Avogadro::Rendering::BezierGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:25: warning: Compound Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:64: warning: Compound Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:112: warning: Compound Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:16: warning: Compound Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:25: warning: Compound Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/camera.h:26: warning: Compound Avogadro::Rendering::EigenData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:35: warning: Compound Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:38: warning: Compound Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:25: warning: Compound Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:25: warning: Compound Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:28: warning: Compound Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:42: warning: Compound Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:21: warning: Compound Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h:12: warning: Compound Avogadro::Rendering::SolidPipeline is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:92: warning: Compound Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:17: warning: Compound Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:26: warning: Compound Avogadro::TypeTraits is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:37: warning: Compound Avogadro::TypeTraits< char > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:114: warning: Compound Avogadro::TypeTraits< double > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:103: warning: Compound Avogadro::TypeTraits< float > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:81: warning: Compound Avogadro::TypeTraits< int > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:59: warning: Compound Avogadro::TypeTraits< short > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:48: warning: Compound Avogadro::TypeTraits< unsigned char > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:92: warning: Compound Avogadro::TypeTraits< unsigned int > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:70: warning: Compound Avogadro::TypeTraits< unsigned short > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h:14: warning: Compound Avogadro::VTK::ChartDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:26: warning: Compound Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/qvtkwidget.h:14: warning: Compound Avogadro::VTK::QVTKWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkglwidget.h:38: warning: Compound Avogadro::VTK::vtkGLWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:217: warning: no matching class member found for template < Molecule_T > BondTemplate< Molecule_T >::AtomType getOtherAtom(Avogadro::Core::BondTemplate< Molecule_T >::Molecule_T::AtomType atom) const Possible candidates: 'AtomType BondTemplate< Molecule_T >::getOtherAtom(Index index) const' at line 99 of file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h 'AtomType BondTemplate< Molecule_T >::getOtherAtom(AtomType atom) const' at line 104 of file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h:35: warning: Member override (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h:62: warning: Member m_scene (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h:63: warning: Member m_bounds[6] (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h:65: warning: Member m_initialized (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:32: warning: Member points[8] (variable) of struct Avogadro::Frustrum is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:33: warning: Member planes[4] (variable) of struct Avogadro::Frustrum is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:33: warning: Member name() (function) of class Avogadro::TypeTraits is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:44: warning: Member name() (function) of class Avogadro::TypeTraits< char > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:33: warning: Member name() (function) of class Avogadro::TypeTraits< char > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:121: warning: Member name() (function) of class Avogadro::TypeTraits< double > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:33: warning: Member name() (function) of class Avogadro::TypeTraits< double > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:110: warning: Member name() (function) of class Avogadro::TypeTraits< float > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:33: warning: Member name() (function) of class Avogadro::TypeTraits< float > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:88: warning: Member name() (function) of class Avogadro::TypeTraits< int > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:33: warning: Member name() (function) of class Avogadro::TypeTraits< int > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:66: warning: Member name() (function) of class Avogadro::TypeTraits< short > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:33: warning: Member name() (function) of class Avogadro::TypeTraits< short > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:55: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned char > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:33: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned char > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:99: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned int > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:33: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned int > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:77: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned short > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:33: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned short > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemanager.h:97: warning: Member nameForModel(const std::string &identifier) const (function) of class Avogadro::Calc::ChargeManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h:83: warning: Member partialCharges(Core::Molecule &mol) const =0 (function) of class Avogadro::Calc::ChargeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h:96: warning: argument 'array' of command @param is not found in the argument list of ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h:96: warning: The following parameter of Avogadro::Calc::ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const is not documented: parameter 'points' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/defaultmodel.h:35: warning: Member DefaultModel(const std::string &identifier="") (function) of class Avogadro::Calc::DefaultModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/defaultmodel.h:80: warning: Member m_identifier (variable) of class Avogadro::Calc::DefaultModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/defaultmodel.h:81: warning: Member m_elements (variable) of class Avogadro::Calc::DefaultModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energycalculator.h:118: warning: Member m_mask (variable) of class Avogadro::Calc::EnergyCalculator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:42: warning: Member value(const Eigen::VectorXd &x) override (function) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:43: warning: Member gradient(const Eigen::VectorXd &x, Eigen::VectorXd &grad) override (function) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:51: warning: Member m_molecule (variable) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:52: warning: Member m_cell (variable) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:53: warning: Member m_radii (variable) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:54: warning: Member m_vdw (variable) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:55: warning: Member m_depth (variable) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:56: warning: Member m_exponent (variable) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:58: warning: Member m_elements (variable) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energycalculator.h:118: warning: Member m_mask (variable) of class Avogadro::Calc::EnergyCalculator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:21: warning: Member Angle (typedef) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:21: warning: Member Dihedral (typedef) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:15: warning: Member AtomHybridization (enumeration) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:32: warning: Member AtomicNumber (enumeration) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:381: warning: Member operator==(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:388: warning: Member operator!=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:394: warning: Member operator<(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:401: warning: Member operator>(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:407: warning: Member operator<=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:413: warning: Member operator>=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:419: warning: Member swap(Array< T > &lhs, Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/avogadrocore.h:63: warning: Member isCustomElement(unsigned char atomicNumber) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:59: warning: Member ALAData("ALA", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HB3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:88: warning: Member CYSData("CYS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "SG", 16 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HG", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "SG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "SG", "HG" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:119: warning: Member ASPData("ASP", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OD1", 8 }, { "OD2", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD2", 1 }, { "HD2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "OD2" }, { "OD2", "HD2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "OD1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:153: warning: Member GLUData("GLU", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE1", 8 }, { "OE2", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "OE2" }, { "OE2", "HE2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CD", "OE1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:193: warning: Member PHEData("PHE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HZ", 1 }, { "HZ", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "HZ" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:223: warning: Member GLYData("GLY", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA2", 1 }, { "HA3", 1 }, { "HA3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "HA2" }, { "CA", "HA3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:246: warning: Member HISData("HIS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "ND1", 7 }, { "CD2", 6 }, { "CE1", 6 }, { "NE2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "ND1" }, { "ND1", "HD1" }, { "CD2", "NE2" }, { "CD2", "HD2" }, { "CE1", "NE2" }, { "CE1", "HE1" }, { "NE2", "HE2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD2" }, { "ND1", "CE1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:275: warning: Member ILEData("ILE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG1", 6 }, { "CG2", 6 }, { "CD1", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG12", 1 }, { "HG13", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HD11", 1 }, { "HD12", 1 }, { "HD13", 1 }, { "HD13", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "CG1", "CD1" }, { "CG1", "HG12" }, { "CG1", "HG13" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "CD1", "HD11" }, { "CD1", "HD12" }, { "CD1", "HD13" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:291: warning: Member LYSData("LYS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "CE", 6 }, { "NZ", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HZ1", 1 }, { "HZ2", 1 }, { "HZ3", 1 }, { "HZ3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "CE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "CE", "NZ" }, { "CE", "HE2" }, { "CE", "HE3" }, { "NZ", "HZ1" }, { "NZ", "HZ2" }, { "NZ", "HZ3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:308: warning: Member LEUData("LEU", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HD11", 1 }, { "HD12", 1 }, { "HD13", 1 }, { "HD21", 1 }, { "HD22", 1 }, { "HD23", 1 }, { "HD23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD1" }, { "CG", "CD2" }, { "CG", "HG" }, { "CD1", "HD11" }, { "CD1", "HD12" }, { "CD1", "HD13" }, { "CD2", "HD21" }, { "CD2", "HD22" }, { "CD2", "HD23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:324: warning: Member METData("MET", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "CE", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HE3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "SD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "SD", "CE" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:352: warning: Member ASNData("ASN", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OD1", 8 }, { "ND2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD21", 1 }, { "HD22", 1 }, { "HD22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "ND2" }, { "ND2", "HD21" }, { "ND2", "HD22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "OD1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:388: warning: Member PROData("PRO", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OXT", 8 }, { "H", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HD3", 1 } }, { { "N", "CA" }, { "N", "CD" }, { "N", "H" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "HD2" }, { "CD", "HD3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:426: warning: Member GLNData("GLN", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE1", 8 }, { "NE2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE21", 1 }, { "HE22", 1 }, { "HE22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "NE2" }, { "NE2", "HE21" }, { "NE2", "HE22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CD", "OE1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:453: warning: Member ARGData("ARG", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "NE", 7 }, { "CZ", 6 }, { "NH1", 7 }, { "NH2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE", 1 }, { "HH11", 1 }, { "HH12", 1 }, { "HH21", 1 }, { "HH22", 1 }, { "HH22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "NE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "NE", "CZ" }, { "NE", "HE" }, { "CZ", "NH1" }, { "NH1", "HH11" }, { "NH1", "HH12" }, { "NH2", "HH21" }, { "NH2", "HH22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CZ", "NH2" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:471: warning: Member SERData("SER", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OG", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HG", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "OG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OG", "HG" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:502: warning: Member THRData("THR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OG1", 8 }, { "CG2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG1", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HG23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "OG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "OG1", "HG1" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:539: warning: Member VALData("VAL", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG1", 6 }, { "CG2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG11", 1 }, { "HG12", 1 }, { "HG13", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HG23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "CG1", "HG11" }, { "CG1", "HG12" }, { "CG1", "HG13" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:580: warning: Member TRPData("TRP", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "NE1", 7 }, { "CE2", 6 }, { "CE3", 6 }, { "CZ2", 6 }, { "CZ3", 6 }, { "CH2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HE1", 1 }, { "HE3", 1 }, { "HZ2", 1 }, { "HZ3", 1 }, { "HH2", 1 }, { "HH2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "NE1" }, { "CD1", "HD1" }, { "CD2", "CE3" }, { "NE1", "CE2" }, { "NE1", "HE1" }, { "CE2", "CZ2" }, { "CE3", "HE3" }, { "CZ2", "HZ2" }, { "CZ3", "CH2" }, { "CZ3", "HZ3" }, { "CH2", "HH2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE3", "CZ3" }, { "CZ2", "CH2" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:602: warning: Member TYRData("TYR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OH", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HH", 1 }, { "HH", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "OH" }, { "OH", "HH" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:618: warning: Member DAData("DA", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H61", 1 }, { "H62", 1 }, { "H62", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "H61" }, { "N6", "H62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:645: warning: Member DCData("DC", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H41", 1 }, { "H42", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "C4", "N4" }, { "C4", "C5" }, { "N4", "H41" }, { "N4", "H42" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "N3", "C4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:666: warning: Member DGData("DG", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H21", 1 }, { "H21", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "N2" }, { "N2", "H21" }, { "N2", "H22" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:693: warning: Member DTData("DT", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "C7", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H3", 1 }, { "H71", 1 }, { "H72", 1 }, { "H73", 1 }, { "H73", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "H3" }, { "C4", "C5" }, { "C5", "C7" }, { "C7", "H71" }, { "C7", "H72" }, { "C7", "H73" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "C4", "O4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:716: warning: Member DIData("DI", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H1", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:741: warning: Member AData("A", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H61", 1 }, { "H62", 1 }, { "H62", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "H61" }, { "N6", "H62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:768: warning: Member CData("C", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H41", 1 }, { "H42", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "C4", "N4" }, { "C4", "C5" }, { "N4", "H41" }, { "N4", "H42" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "N3", "C4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:789: warning: Member GData("G", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H21", 1 }, { "H21", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "N2" }, { "N2", "H21" }, { "N2", "H22" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:816: warning: Member UData("U", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H3", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "H3" }, { "C4", "C5" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "C4", "O4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:837: warning: Member IData("I", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H1", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:864: warning: Member HEMData("HEM", { { "CHA", 6 }, { "CHB", 6 }, { "CHC", 6 }, { "CHD", 6 }, { "C1A", 6 }, { "C2A", 6 }, { "C3A", 6 }, { "C4A", 6 }, { "CMA", 6 }, { "CAA", 6 }, { "CBA", 6 }, { "CGA", 6 }, { "O1A", 8 }, { "O2A", 8 }, { "C1B", 6 }, { "C2B", 6 }, { "C3B", 6 }, { "C4B", 6 }, { "CMB", 6 }, { "CAB", 6 }, { "CBB", 6 }, { "C1C", 6 }, { "C2C", 6 }, { "C3C", 6 }, { "C4C", 6 }, { "CMC", 6 }, { "CAC", 6 }, { "CBC", 6 }, { "C1D", 6 }, { "C2D", 6 }, { "C3D", 6 }, { "C4D", 6 }, { "CMD", 6 }, { "CAD", 6 }, { "CBD", 6 }, { "CGD", 6 }, { "O1D", 8 }, { "O2D", 8 }, { "NA", 7 }, { "NB", 7 }, { "NC", 7 }, { "ND", 7 }, { "FE", 26 }, { "HHB", 1 }, { "HHC", 1 }, { "HHD", 1 }, { "HMA", 1 }, { "HMAA", 1 }, { "HMAB", 1 }, { "HAA", 1 }, { "HAAA", 1 }, { "HBA", 1 }, { "HBAA", 1 }, { "HMB", 1 }, { "HMBA", 1 }, { "HMBB", 1 }, { "HAB", 1 }, { "HBB", 1 }, { "HBBA", 1 }, { "HMC", 1 }, { "HMCA", 1 }, { "HMCB", 1 }, { "HAC", 1 }, { "HBC", 1 }, { "HBCA", 1 }, { "HMD", 1 }, { "HMDA", 1 }, { "HMDB", 1 }, { "HAD", 1 }, { "HADA", 1 }, { "HBD", 1 }, { "HBDA", 1 }, { "H2A", 1 }, { "H2D", 1 }, { "H2D", 1 } }, { { "CHA", "C1A" }, { "CHA", "HHA" }, { "CHB", "C4A" }, { "CHB", "HHB" }, { "CHC", "C4B" }, { "CHC", "HHC" }, { "CHD", "C1D" }, { "CHD", "HHD" }, { "C1A", "NA" }, { "C2A", "C3A" }, { "C2A", "CAA" }, { "C3A", "CMA" }, { "C4A", "NA" }, { "CMA", "HMA" }, { "CMA", "HMAA" }, { "CMA", "HMAB" }, { "CAA", "CBA" }, { "CAA", "HAA" }, { "CAA", "HAAA" }, { "CBA", "CGA" }, { "CBA", "HBA" }, { "CBA", "HBAA" }, { "CGA", "O2A" }, { "O2A", "H2A" }, { "C1B", "C2B" }, { "C1B", "NB" }, { "C2B", "CMB" }, { "C3B", "C4B" }, { "C3B", "CAB" }, { "CMB", "HMB" }, { "CMB", "HMBA" }, { "CMB", "HMBB" }, { "CAB", "HAB" }, { "CBB", "HBB" }, { "CBB", "HBBA" }, { "C1C", "C2C" }, { "C1C", "NC" }, { "C2C", "CMC" }, { "C3C", "C4C" }, { "C3C", "CAC" }, { "C4C", "NC" }, { "CMC", "HMC" }, { "CMC", "HMCA" }, { "CMC", "HMCB" }, { "CAC", "HAC" }, { "CBC", "HBC" }, { "CBC", "HBCA" }, { "C1D", "C2D" }, { "C2D", "CMD" }, { "C3D", "C4D" }, { "C3D", "CAD" }, { "C4D", "ND" }, { "CMD", "HMD" }, { "CMD", "HMDA" }, { "CMD", "HMDB" }, { "CAD", "CBD" }, { "CAD", "HAD" }, { "CAD", "HADA" }, { "CBD", "CGD" }, { "CBD", "HBD" }, { "CBD", "HBDA" }, { "CGD", "O2D" }, { "O2D", "H2D" }, { "FE", "NA" }, { "FE", "NB" }, { "FE", "NC" }, { "FE", "ND" } }, { { "CHA", "C4D" }, { "CHB", "C1B" }, { "CHC", "C1C" }, { "CHD", "C4C" }, { "C1A", "C2A" }, { "C3A", "C4A" }, { "CGA", "O1A" }, { "C2B", "C3B" }, { "C4B", "NB" }, { "CAB", "CBB" }, { "C2C", "C3C" }, { "CAC", "CBC" }, { "C1D", "ND" }, { "C2D", "C3D" }, { "CGD", "O1D" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:916: warning: Member HOHData("HOH", { { "O", 8 }, { "H1", 1 }, { "H1", 1 } }, { { "O", "H1" }, { "O", "H2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:923: warning: Member SO4Data("SO4", { { "S", 16 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O3", 8 } }, { { "S", "O3" }, { "S", "O4" } }, { { "S", "O1" }, { "S", "O2" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:931: warning: Member GOLData("GOL", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "O3", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H2", 1 }, { "HO2", 1 }, { "H31", 1 }, { "H32", 1 }, { "H32", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "C3" }, { "C2", "H2" }, { "O2", "HO2" }, { "C3", "O3" }, { "C3", "H31" }, { "C3", "H32" }, { "O3", "HO3" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:963: warning: Member EDOData("EDO", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "HO2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:987: warning: Member MSEData("MSE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "SE", 34 }, { "CE", 6 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HXT", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "OXT", "HXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "SE" }, { "CG", "HG2" }, { "CG", "HG3" }, { "SE", "CE" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1015: warning: Member NAGData("NAG", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "N2", 7 }, { "O1", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "O7", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H81", 1 }, { "H82", 1 }, { "H83", 1 }, { "HN2", 1 }, { "HO1", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "N2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "N2" }, { "C8", "H81" }, { "C8", "H82" }, { "C8", "H83" }, { "N2", "HN2" }, { "O1", "HO1" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, { { "C7", "O7" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1035: warning: Member PO4Data("PO4", { { "P", 15 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O3", 8 } }, { { "P", "O2" }, { "P", "O3" }, { "P", "O4" } }, { { "P", "O1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1043: warning: Member ACTData("ACT", { { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CH3", 6 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "OXT" }, { "C", "CH3" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1060: warning: Member PEGData("PEG", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H41", 1 }, { "H42", 1 }, { "H42", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O4" }, { "C4", "H41" }, { "C4", "H42" }, { "O4", "HO4" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1098: warning: Member BMAData("BMA", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1115: warning: Member MANData("MAN", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1132: warning: Member DMSData("DMS", { { "S", 16 }, { "O", 8 }, { "C1", 6 }, { "C2", 6 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "S", "C1" }, { "S", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "H21" }, { "C2", "H22" }, { "C2", "H23" } }, { { "S", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1155: warning: Member ADPData("ADP", { { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOB2", 1 }, { "HOB3", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3B", "HOB3" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1185: warning: Member FADData("FAD", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4X", 6 }, { "N5", 7 }, { "C5X", 6 }, { "C6", 6 }, { "C7", 6 }, { "C7M", 6 }, { "C8", 6 }, { "C8M", 6 }, { "C9", 6 }, { "C9A", 6 }, { "N10", 7 }, { "C10", 6 }, { "C1'", 6 }, { "C2'", 6 }, { "O2'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C4'", 6 }, { "O4'", 8 }, { "C5'", 6 }, { "O5'", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "HN3", 1 }, { "H6", 1 }, { "HM71", 1 }, { "HM72", 1 }, { "HM73", 1 }, { "HM81", 1 }, { "HM82", 1 }, { "HM83", 1 }, { "H9", 1 }, { "H1'1", 1 }, { "H1'2", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H4'", 1 }, { "HO4'", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H5'2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3P" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "N1", "C2" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4X" }, { "C4X", "C10" }, { "N5", "C5X" }, { "C5X", "C9A" }, { "C6", "C7" }, { "C6", "H6" }, { "C7", "C7M" }, { "C7M", "HM71" }, { "C7M", "HM72" }, { "C7M", "HM73" }, { "C8", "C8M" }, { "C8", "C9" }, { "C8M", "HM81" }, { "C8M", "HM82" }, { "C8M", "HM83" }, { "C9", "H9" }, { "C9A", "N10" }, { "N10", "C10" }, { "N10", "C1'" }, { "C1'", "C2'" }, { "C1'", "H1'1" }, { "C1'", "H1'2" }, { "C2'", "O2'" }, { "C2'", "C3'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C3'", "O3'" }, { "C3'", "C4'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C4'", "O4'" }, { "C4'", "C5'" }, { "C4'", "H4'" }, { "O4'", "HO4'" }, { "C5'", "O5'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "O5'", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "N1", "C10" }, { "C2", "O2" }, { "C4", "O4" }, { "C4X", "N5" }, { "C5X", "C6" }, { "C7", "C8" }, { "C9", "C9A" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1241: warning: Member ACEData("ACE", { { "C", 6 }, { "O", 8 }, { "CH3", 6 }, { "H", 1 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "CH3" }, { "C", "H" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1258: warning: Member MPDData("MPD", { { "C1", 6 }, { "C2", 6 }, { "O2", 8 }, { "CM", 6 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "HO2", 1 }, { "HM1", 1 }, { "HM2", 1 }, { "HM3", 1 }, { "H31", 1 }, { "H32", 1 }, { "H4", 1 }, { "HO4", 1 }, { "H51", 1 }, { "H52", 1 }, { "H52", 1 } }, { { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "O2" }, { "C2", "CM" }, { "C2", "C3" }, { "O2", "HO2" }, { "CM", "HM1" }, { "CM", "HM2" }, { "CM", "HM3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O4" }, { "C4", "C5" }, { "C4", "H4" }, { "O4", "HO4" }, { "C5", "H51" }, { "C5", "H52" }, { "C5", "H53" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1276: warning: Member GLCData("GLC", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1293: warning: Member ATPData("ATP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "O3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1326: warning: Member MESData("MES", { { "O1", 8 }, { "C2", 6 }, { "C3", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "S", 16 }, { "O1S", 8 }, { "O2S", 8 }, { "O3S", 8 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "HN4", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H81", 1 } }, { { "O1", "C2" }, { "O1", "C6" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "N4" }, { "C3", "H31" }, { "C3", "H32" }, { "N4", "C5" }, { "N4", "C7" }, { "N4", "HN4" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "S" }, { "C8", "H81" }, { "C8", "H82" }, { "S", "O3S" } }, { { "S", "O1S" }, { "S", "O2S" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1343: warning: Member TRSData("TRS", { { "C", 6 }, { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "N", 7 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "HN1", 1 }, { "HN2", 1 }, { "HN3", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO2", 1 } }, { { "C", "C1" }, { "C", "C2" }, { "C", "C3" }, { "C", "N" }, { "C1", "O1" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "O3" }, { "C3", "H31" }, { "C3", "H32" }, { "N", "HN1" }, { "N", "HN2" }, { "N", "HN3" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1372: warning: Member PG4Data("PG4", { { "O1", 8 }, { "C1", 6 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O3", 8 }, { "C5", 6 }, { "C6", 6 }, { "O4", 8 }, { "C7", 6 }, { "C8", 6 }, { "O5", 8 }, { "HO1", 1 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H41", 1 }, { "H42", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H82", 1 }, { "H82", 1 } }, { { "O1", "C1" }, { "O1", "HO1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O3" }, { "C4", "H41" }, { "C4", "H42" }, { "O3", "C5" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "O4" }, { "C6", "H61" }, { "C6", "H62" }, { "O4", "C7" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "O5" }, { "C8", "H81" }, { "C8", "H82" }, { "O5", "HO5" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1393: warning: Member PGEData("PGE", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "C6", 6 }, { "C5", 6 }, { "O3", 8 }, { "H1", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H2", 1 }, { "H22", 1 }, { "H3", 1 }, { "H32", 1 }, { "H4", 1 }, { "H42", 1 }, { "HO4", 1 }, { "H6", 1 }, { "H62", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H1" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H2" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H3" }, { "C3", "H32" }, { "C4", "O3" }, { "C4", "H4" }, { "C4", "H42" }, { "O4", "C6" }, { "O4", "HO4" }, { "C6", "C5" }, { "C6", "H6" }, { "C6", "H62" }, { "C5", "O3" }, { "C5", "H5" }, { "C5", "H52" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1410: warning: Member NADData("NAD", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H4N", 1 }, { "H5N", 1 }, { "H5N", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "H4N" }, { "C5N", "C6N" }, { "C5N", "H5N" }, { "C6N", "H6N" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "N1N", "C6N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C4N", "C5N" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1457: warning: Member FUCData("FUC", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H63", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO3", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "H61" }, { "C6", "H62" }, { "C6", "H63" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1474: warning: Member NH2Data("NH2", { { "N", 7 }, { "HN1", 1 }, { "HN1", 1 } }, { { "N", "HN1" }, { "N", "HN2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1481: warning: Member FMTData("FMT", { { "C", 6 }, { "O1", 8 }, { "O2", 8 }, { "H", 1 }, { "H", 1 } }, { { "C", "O2" }, { "C", "H" }, { "O2", "HO2" } }, { { "C", "O1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1489: warning: Member NAPData("NAP", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "P2B", 15 }, { "O1X", 8 }, { "O2X", 8 }, { "O3X", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H4N", 1 }, { "H5N", 1 }, { "H6N", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "P2B" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "H4N" }, { "C5N", "C6N" }, { "C5N", "H5N" }, { "C6N", "H6N" }, { "P2B", "O2X" }, { "P2B", "O3X" }, { "O2X", "HOP2" }, { "O3X", "HOP3" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "N1N", "C6N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C4N", "C5N" }, { "P2B", "O1X" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1539: warning: Member SEPData("SEP", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "OG", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HXT", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "OG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OG", "P" }, { "C", "OXT" }, { "OXT", "HXT" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "C", "O" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1579: warning: Member GDPData("GDP", { { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOB2", 1 }, { "HOB3", 1 }, { "HOA2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3B", "HOB3" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1609: warning: Member GALData("GAL", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1626: warning: Member SF4Data("SF4", { { "FE1", 26 }, { "FE2", 26 }, { "FE3", 26 }, { "FE4", 26 }, { "S1", 16 }, { "S2", 16 }, { "S3", 16 }, { "S3", 16 } }, { { "FE1", "S2" }, { "FE1", "S3" }, { "FE1", "S4" }, { "FE2", "S1" }, { "FE2", "S3" }, { "FE2", "S4" }, { "FE3", "S1" }, { "FE3", "S2" }, { "FE3", "S4" }, { "FE4", "S1" }, { "FE4", "S2" }, { "FE4", "S3" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1651: warning: Member BGCData("BGC", { { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "C1", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H1", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C2", "C3" }, { "C2", "C1" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1668: warning: Member FMNData("FMN", { { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4A", 6 }, { "N5", 7 }, { "C5A", 6 }, { "C6", 6 }, { "C7", 6 }, { "C7M", 6 }, { "C8", 6 }, { "C8M", 6 }, { "C9", 6 }, { "C9A", 6 }, { "N10", 7 }, { "C10", 6 }, { "C1'", 6 }, { "C2'", 6 }, { "O2'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C4'", 6 }, { "O4'", 8 }, { "C5'", 6 }, { "O5'", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "HN3", 1 }, { "H6", 1 }, { "HM71", 1 }, { "HM72", 1 }, { "HM73", 1 }, { "HM81", 1 }, { "HM82", 1 }, { "HM83", 1 }, { "H9", 1 }, { "H1'1", 1 }, { "H1'2", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H4'", 1 }, { "HO4'", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N1", "C2" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4A" }, { "C4A", "C10" }, { "N5", "C5A" }, { "C5A", "C9A" }, { "C6", "C7" }, { "C6", "H6" }, { "C7", "C7M" }, { "C7M", "HM71" }, { "C7M", "HM72" }, { "C7M", "HM73" }, { "C8", "C8M" }, { "C8", "C9" }, { "C8M", "HM81" }, { "C8M", "HM82" }, { "C8M", "HM83" }, { "C9", "H9" }, { "C9A", "N10" }, { "N10", "C10" }, { "N10", "C1'" }, { "C1'", "C2'" }, { "C1'", "H1'1" }, { "C1'", "H1'2" }, { "C2'", "O2'" }, { "C2'", "C3'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C3'", "O3'" }, { "C3'", "C4'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C4'", "O4'" }, { "C4'", "C5'" }, { "C4'", "H4'" }, { "O4'", "HO4'" }, { "C5'", "O5'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "O5'", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "N1", "C10" }, { "C2", "O2" }, { "C4", "O4" }, { "C4A", "N5" }, { "C5A", "C6" }, { "C7", "C8" }, { "C9", "C9A" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1704: warning: Member UNKData("UNK", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HG3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "HG1" }, { "CG", "HG2" }, { "CG", "HG3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1739: warning: Member CITData("CIT", { { "C1", 6 }, { "O1", 8 }, { "O2", 8 }, { "C2", 6 }, { "C3", 6 }, { "O7", 8 }, { "C4", 6 }, { "C5", 6 }, { "O3", 8 }, { "O4", 8 }, { "C6", 6 }, { "O5", 8 }, { "O6", 8 }, { "HO2", 1 }, { "H21", 1 }, { "H22", 1 }, { "HO7", 1 }, { "H41", 1 }, { "H42", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "O2" }, { "C1", "C2" }, { "O2", "HO2" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "O7" }, { "C3", "C4" }, { "C3", "C6" }, { "O7", "HO7" }, { "C4", "C5" }, { "C4", "H41" }, { "C4", "H42" }, { "C5", "O4" }, { "O4", "HO4" }, { "C6", "O6" }, { "O6", "HO6" } }, { { "C1", "O1" }, { "C5", "O3" }, { "C6", "O5" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1767: warning: Member EPEData("EPE", { { "N1", 7 }, { "C2", 6 }, { "C3", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "O8", 8 }, { "C9", 6 }, { "C10", 6 }, { "S", 16 }, { "O1S", 8 }, { "O2S", 8 }, { "O3S", 8 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H82", 1 }, { "HO8", 1 }, { "H91", 1 }, { "H92", 1 }, { "H101", 1 }, { "H102", 1 }, { "H102", 1 } }, { { "N1", "C2" }, { "N1", "C6" }, { "N1", "C9" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "N4" }, { "C3", "H31" }, { "C3", "H32" }, { "N4", "C5" }, { "N4", "C7" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "O8" }, { "C8", "H81" }, { "C8", "H82" }, { "O8", "HO8" }, { "C9", "C10" }, { "C9", "H91" }, { "C9", "H92" }, { "C10", "S" }, { "C10", "H101" }, { "C10", "H102" }, { "S", "O3S" }, { "O3S", "HOS3" } }, { { "S", "O1S" }, { "S", "O2S" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1788: warning: Member TPOData("TPO", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG2", 6 }, { "OG1", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HOP2", 1 }, { "HOP3", 1 }, { "HOP3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG2" }, { "CB", "OG1" }, { "CB", "HB" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OG1", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "P", "O1P" }, { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1818: warning: Member PLPData("PLP", { { "N1", 7 }, { "C2", 6 }, { "C2A", 6 }, { "C3", 6 }, { "O3", 8 }, { "C4", 6 }, { "C4A", 6 }, { "O4A", 8 }, { "C5", 6 }, { "C6", 6 }, { "C5A", 6 }, { "O4P", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H2A1", 1 }, { "H2A2", 1 }, { "H2A3", 1 }, { "HO3", 1 }, { "H4A", 1 }, { "H6", 1 }, { "H5A1", 1 }, { "H5A2", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N1", "C6" }, { "C2", "C2A" }, { "C2", "C3" }, { "C2A", "H2A1" }, { "C2A", "H2A2" }, { "C2A", "H2A3" }, { "C3", "O3" }, { "O3", "HO3" }, { "C4", "C4A" }, { "C4", "C5" }, { "C4A", "H4A" }, { "C5", "C5A" }, { "C6", "H6" }, { "C5A", "O4P" }, { "C5A", "H5A1" }, { "C5A", "H5A2" }, { "O4P", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "N1", "C2" }, { "C3", "C4" }, { "C4A", "O4A" }, { "C5", "C6" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1840: warning: Member GTPData("GTP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "O3B", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "O3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "O3B", "PB" }, { "PB", "O2B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1873: warning: Member SAHData("SAH", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HN1", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HXT", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "N", "CA" }, { "N", "HN1" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "SD" }, { "CG", "HG1" }, { "CG", "HG2" }, { "SD", "C5'" }, { "C", "OXT" }, { "OXT", "HXT" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "C", "O" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1904: warning: Member BMEData("BME", { { "C1", 6 }, { "C2", 6 }, { "O1", 8 }, { "S2", 16 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "HO1", 1 }, { "HO1", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "S2" }, { "C2", "H21" }, { "C2", "H22" }, { "O1", "HO1" }, { "S2", "HS2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1928: warning: Member ACYData("ACY", { { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CH3", 6 }, { "HXT", 1 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "OXT" }, { "C", "CH3" }, { "OXT", "HXT" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1947: warning: Member ANPData("ANP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "N3B", 7 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HNB1", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "N3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "PB", "O2B" }, { "PB", "N3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "N3B", "HNB1" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1980: warning: Member IMDData("IMD", { { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "C5", 6 }, { "HN1", 1 }, { "H2", 1 }, { "HN3", 1 }, { "H4", 1 }, { "H4", 1 } }, { { "N1", "C2" }, { "N1", "C5" }, { "N1", "HN1" }, { "C2", "H2" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "H4" }, { "C5", "H5" } }, { { "C2", "N3" }, { "C4", "C5" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2003: warning: Member PCAData("PCA", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HG3", 1 } }, { { "N", "CA" }, { "N", "CD" }, { "N", "H" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "CD", "OE" }, { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2038: warning: Member CSOData("CSO", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "SG", 16 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "OD", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HXT", 1 }, { "HXT", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "SG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "SG", "OD" }, { "C", "OXT" }, { "OXT", "HXT" }, { "OD", "HD" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2071: warning: Member MLIData("MLI", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "O6", 8 }, { "O7", 8 }, { "O8", 8 }, { "O9", 8 }, { "H11", 1 }, { "H11", 1 } }, { { "C1", "C2" }, { "C1", "C3" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O7" }, { "C3", "O9" } }, { { "C2", "O6" }, { "C3", "O8" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2091: warning: Member FESData("FES", { { "FE1", 26 }, { "FE2", 26 }, { "S1", 16 }, { "S1", 16 } }, { { "FE1", "S1" }, { "FE1", "S2" }, { "FE2", "S1" }, { "FE2", "S2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2100: warning: Member NDPData("NDP", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "P2B", 15 }, { "O1X", 8 }, { "O2X", 8 }, { "O3X", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H21N", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H41N", 1 }, { "H42N", 1 }, { "H5N", 1 }, { "H6N", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "P2B" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O2N", "H21N" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "N1N", "C6N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "C5N" }, { "C4N", "H41N" }, { "C4N", "H42N" }, { "C5N", "H5N" }, { "C6N", "H6N" }, { "P2B", "O2X" }, { "P2B", "O3X" }, { "O2X", "HOP2" }, { "O3X", "HOP3" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C5N", "C6N" }, { "P2B", "O1X" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2155: warning: Member AMPData("AMP", { { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP2", 1 }, { "HOP3", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "P", "O2P" }, { "P", "O3P" }, { "P", "O5'" }, { "O2P", "HOP2" }, { "O3P", "HOP3" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "O1P" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2182: warning: Member NO3Data("NO3", { { "N", 7 }, { "O1", 8 }, { "O2", 8 }, { "O2", 8 } }, { { "N", "O2" }, { "N", "O3" } }, { { "N", "O1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2189: warning: Member PTRData("PTR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OH", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HXT", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HO2P", 1 }, { "HO2P", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "OXT", "HXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "OH" }, { "OH", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HO2P" }, { "O3P", "HO3P" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2211: warning: Member IPAData("IPA", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "O2", 8 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "H2", 1 }, { "H31", 1 }, { "H32", 1 }, { "H33", 1 }, { "H33", 1 } }, { { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "H31" }, { "C3", "H32" }, { "C3", "H33" }, { "O2", "HO2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2239: warning: Member COAData("COA", { { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N7A", 7 }, { "C8A", 6 }, { "N9A", 7 }, { "C1B", 6 }, { "C2B", 6 }, { "O2B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "P3B", 15 }, { "O7A", 8 }, { "O8A", 8 }, { "O9A", 8 }, { "C4B", 6 }, { "O4B", 8 }, { "C5B", 6 }, { "O5B", 8 }, { "P1A", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "P2A", 15 }, { "O4A", 8 }, { "O5A", 8 }, { "O6A", 8 }, { "CBP", 6 }, { "CCP", 6 }, { "CDP", 6 }, { "CEP", 6 }, { "CAP", 6 }, { "OAP", 8 }, { "C9P", 6 }, { "O9P", 8 }, { "N8P", 7 }, { "C7P", 6 }, { "C6P", 6 }, { "C5P", 6 }, { "O5P", 8 }, { "N4P", 7 }, { "C3P", 6 }, { "C2P", 6 }, { "S1P", 16 }, { "H2A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H8A", 1 }, { "H1B", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H3B", 1 }, { "HOA8", 1 }, { "HOA9", 1 }, { "H4B", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "HOA2", 1 }, { "HOA5", 1 }, { "H121", 1 }, { "H122", 1 }, { "H131", 1 }, { "H132", 1 }, { "H133", 1 }, { "H141", 1 }, { "H142", 1 }, { "H143", 1 }, { "H10", 1 }, { "HO1", 1 }, { "HN8", 1 }, { "H71", 1 }, { "H72", 1 }, { "H61", 1 }, { "H62", 1 }, { "HN4", 1 }, { "H31", 1 }, { "H32", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "C4A", "N9A" }, { "C5A", "C6A" }, { "C5A", "N7A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "C8A", "N9A" }, { "C8A", "H8A" }, { "N9A", "C1B" }, { "C1B", "C2B" }, { "C1B", "O4B" }, { "C1B", "H1B" }, { "C2B", "O2B" }, { "C2B", "C3B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C3B", "O3B" }, { "C3B", "C4B" }, { "C3B", "H3B" }, { "O3B", "P3B" }, { "P3B", "O8A" }, { "P3B", "O9A" }, { "O8A", "HOA8" }, { "O9A", "HOA9" }, { "C4B", "O4B" }, { "C4B", "C5B" }, { "C4B", "H4B" }, { "C5B", "O5B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "O5B", "P1A" }, { "P1A", "O2A" }, { "P1A", "O3A" }, { "O2A", "HOA2" }, { "O3A", "P2A" }, { "P2A", "O5A" }, { "P2A", "O6A" }, { "O5A", "HOA5" }, { "O6A", "CCP" }, { "CBP", "CCP" }, { "CBP", "CDP" }, { "CBP", "CEP" }, { "CBP", "CAP" }, { "CCP", "H121" }, { "CCP", "H122" }, { "CDP", "H131" }, { "CDP", "H132" }, { "CDP", "H133" }, { "CEP", "H141" }, { "CEP", "H142" }, { "CEP", "H143" }, { "CAP", "OAP" }, { "CAP", "C9P" }, { "CAP", "H10" }, { "OAP", "HO1" }, { "C9P", "N8P" }, { "N8P", "C7P" }, { "N8P", "HN8" }, { "C7P", "C6P" }, { "C7P", "H71" }, { "C7P", "H72" }, { "C6P", "C5P" }, { "C6P", "H61" }, { "C6P", "H62" }, { "C5P", "N4P" }, { "N4P", "C3P" }, { "N4P", "HN4" }, { "C3P", "C2P" }, { "C3P", "H31" }, { "C3P", "H32" }, { "C2P", "S1P" }, { "C2P", "H21" }, { "C2P", "H22" }, { "S1P", "HS1" } }, { { "N1A", "C6A" }, { "C2A", "N3A" }, { "C4A", "C5A" }, { "N7A", "C8A" }, { "P3B", "O7A" }, { "P1A", "O1A" }, { "P2A", "O4A" }, { "C9P", "O9P" }, { "C5P", "O5P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2290: warning: Member KCXData("KCX", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "CE", 6 }, { "NZ", 7 }, { "C", 6 }, { "O", 8 }, { "CX", 6 }, { "OXT", 8 }, { "OQ1", 8 }, { "OQ2", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HZ", 1 }, { "HXT", 1 }, { "HXT", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "CE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "CE", "NZ" }, { "CE", "HE2" }, { "CE", "HE3" }, { "NZ", "CX" }, { "NZ", "HZ" }, { "C", "OXT" }, { "CX", "OQ2" }, { "OXT", "HXT" }, { "OQ2", "HQ2" } }, { { "C", "O" }, { "CX", "OQ1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2308: warning: Member H4BData("H4B", { { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4A", 6 }, { "C8A", 6 }, { "N5", 7 }, { "N8", 7 }, { "C6", 6 }, { "C7", 6 }, { "C9", 6 }, { "O9", 8 }, { "C10", 6 }, { "C11", 6 }, { "O10", 8 }, { "HN21", 1 }, { "HN22", 1 }, { "HN3", 1 }, { "HN5", 1 }, { "HN8", 1 }, { "H6", 1 }, { "H71", 1 }, { "H72", 1 }, { "H9", 1 }, { "HO9", 1 }, { "H10", 1 }, { "H111", 1 }, { "H112", 1 }, { "H113", 1 }, { "H113", 1 } }, { { "N1", "C8A" }, { "C2", "N2" }, { "C2", "N3" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4A" }, { "C4A", "N5" }, { "C8A", "N8" }, { "N5", "C6" }, { "N5", "HN5" }, { "N8", "C7" }, { "N8", "HN8" }, { "C6", "C7" }, { "C6", "C9" }, { "C6", "H6" }, { "C7", "H71" }, { "C7", "H72" }, { "C9", "O9" }, { "C9", "C10" }, { "C9", "H9" }, { "O9", "HO9" }, { "C10", "C11" }, { "C10", "O10" }, { "C10", "H10" }, { "C11", "H111" }, { "C11", "H112" }, { "C11", "H113" }, { "O10", "HO0" } }, { { "N1", "C2" }, { "C4", "O4" }, { "C4A", "C8A" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2329: warning: Member SAMData("SAM", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "CE", 6 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HN1", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "N", "CA" }, { "N", "HN1" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "SD" }, { "CG", "HG1" }, { "CG", "HG2" }, { "SD", "CE" }, { "SD", "C5'" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "C", "O" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2361: warning: Member GNPData("GNP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "N3B", 7 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HNB3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'2", 1 }, { "H5'1", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "N3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "N3B", "PB" }, { "N3B", "HNB3" }, { "PB", "O2B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'2" }, { "C5'", "H5'1" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2394: warning: Member FLCData("FLC", { { "CAC", 6 }, { "CA", 6 }, { "CB", 6 }, { "CBC", 6 }, { "CG", 6 }, { "CGC", 6 }, { "OA1", 8 }, { "OA2", 8 }, { "OB1", 8 }, { "OB2", 8 }, { "OG1", 8 }, { "OG2", 8 }, { "OHB", 8 }, { "HA1", 1 }, { "HA2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HG2", 1 } }, { { "CAC", "CA" }, { "CAC", "OA2" }, { "CA", "CB" }, { "CA", "HA1" }, { "CA", "HA2" }, { "CB", "CBC" }, { "CB", "CG" }, { "CB", "OHB" }, { "CBC", "OB2" }, { "CG", "CGC" }, { "CG", "HG1" }, { "CG", "HG2" }, { "CGC", "OG2" }, { "OHB", "HOB" } }, { { "CAC", "OA1" }, { "CBC", "OB1" }, { "CGC", "OG1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:194: warning: Member swap(UnitCell &lhs, UnitCell &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elementdata.h:7: warning: Member element_symbols[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elementdata.h:20: warning: Member element_names[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elementdata.h:47: warning: Member element_masses[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elementdata.h:71: warning: Member valence_electrons[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elementdata.h:83: warning: Member element_VDW[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elementdata.h:226: warning: Member element_covalent[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elementdata.h:267: warning: Member element_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuecolors.h:7: warning: Member chain_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuecolors.h:25: warning: Member amino_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuecolors.h:41: warning: Member shapely_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuecolors.h:57: warning: Member secondary_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2431: warning: Member residueDict (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:16: warning: Member space_group_international_number[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:55: warning: Member space_group_schoenflies[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:134: warning: Member space_group_hall_symbol[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:666: warning: Member space_group_international[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:1198: warning: Member space_group_international_full[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:1730: warning: Member space_group_international_short[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:1822: warning: Member space_group_setting[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:1884: warning: Member space_group_transforms[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:33: warning: Member operator*() (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:37: warning: Member begin() (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:39: warning: Member end() const (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:43: warning: Member operator++() (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:45: warning: Member operator!=(const AngleIterator &other) (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:96: warning: Member Container (typedef) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:99: warning: Member ValueType (typedef) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:119: warning: Member Array(const size_t n, const ValueType &value=ValueType()) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:124: warning: Member Array(InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:156: warning: Member data() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:158: warning: Member constData() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:160: warning: Member size() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:162: warning: Member max_size() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:164: warning: Member empty() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:166: warning: Member capacity() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:168: warning: Member reserve(const size_t &sz) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:174: warning: Member resize(const size_t &sz, const ValueType &t=ValueType()) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:180: warning: Member clear() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:186: warning: Member begin() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:188: warning: Member end() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:190: warning: Member begin() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:196: warning: Member end() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:202: warning: Member rbegin() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:204: warning: Member rend() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:206: warning: Member rbegin() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:212: warning: Member rend() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:218: warning: Member front() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:224: warning: Member front() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:226: warning: Member back() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:232: warning: Member back() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:235: warning: Member assign(InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:241: warning: Member assign(size_type n, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:247: warning: Member push_back(const ValueType &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:253: warning: Member pop_back() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:259: warning: Member insert(iterator position, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:265: warning: Member insert(iterator position, size_type n, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:272: warning: Member insert(iterator position, InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:278: warning: Member erase(iterator position) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:284: warning: Member erase(iterator first, iterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:290: warning: Member operator[](const std::size_t &idx) const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:295: warning: Member operator[](const std::size_t &idx) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:301: warning: Member at(const std::size_t &idx) const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:304: warning: Member operator=(const std::vector< OtherT > &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:312: warning: Member operator=(const Array< OtherT > &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:319: warning: Member operator=(const Array &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:328: warning: Member swap(Array< ValueType > &other) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:351: warning: Member d (variable) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:71: warning: Member m_content (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:72: warning: Member m_data (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:62: warning: Member Holder(const ValueType &value) (function) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:64: warning: Member type() const (function) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:66: warning: Member clone() const (function) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:68: warning: Member m_content (variable) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:53: warning: Member type() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:55: warning: Member clone() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:865: warning: Member Atom(Molecule *m, Index i) (function) of class Avogadro::Core::Atom is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:176: warning: Member selected() const (function) of class Avogadro::Core::AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class Avogadro::Core::AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class Avogadro::Core::AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:187: warning: Member label() const (function) of class Avogadro::Core::AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class Avogadro::Core::AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:176: warning: Member selected() const (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:187: warning: Member label() const (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class Avogadro::Core::AtomTyper is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::AtomTyper is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/basisset.h:82: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented. libs-1.99.0/avogadro/vtk/vtkglwidget.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkglwidget.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/docs/mainpage.dox... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/docs/mainpage.dox... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Warn for undocumented namespaces... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Distributing member group documentation. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating file documentation... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound vtkAvogadroActor... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating docs for compound Frustrum... Generating docs for compound TypeTraits< T >... Generating docs for compound TypeTraits< char >... Generating docs for compound TypeTraits< double >... Generating docs for compound TypeTraits< float >... Generating docs for compound TypeTraits< int >... Generating docs for compound TypeTraits< short >... Generating docs for compound TypeTraits< unsigned char >... Generating docs for compound TypeTraits< unsigned int >... Generating docs for compound TypeTraits< unsigned short >... Generating docs for compound ChargeManager... Generating docs for compound ChargeModel... Generating docs for compound DefaultModel... Generating docs for compound EnergyCalculator... Generating docs for compound EnergyManager... Generating docs for compound LennardJones... Generating docs for namespace Avogadro::Core Generating docs for compound AngleIterator... Generating docs for compound Array< T >... Generating docs for compound ArraySet... Generating docs for nested compound ArraySet::Holder< ValueType >... Generating docs for nested compound ArraySet::PlaceHolder... Generating docs for compound Atom... Generating docs for compound AtomTemplate< Molecule_T >... Generating docs for compound AtomTyper< OutputType >... Generating docs for compound AtomUtilities... Generating docs for compound AvoSpglib... Generating docs for compound BasisSet... Generating docs/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:872: warning: Member Bond(Molecule *m, Index i) (function) of class Avogadro::Core::Bond is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class Avogadro::Core::BondTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class Avogadro::Core::BondTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class Avogadro::Core::BondTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class Avogadro::Core::BondTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/color3f.h:84: warning: Member m_data[3] (variable) of class Avogadro::Core::Color3f is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:40: warning: Member setMolecule(const Molecule *mol) (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:41: warning: Member molecule() const (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:83: warning: Member specification() const (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:92: warning: Member resize(Index _size) (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:93: warning: Member size() const (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:94: warning: Member coordinates() (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:95: warning: Member coordinates() const (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:100: warning: Member operator[](Index _index) (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:101: warning: Member operator[](Index _index) const (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:71: warning: Member m_content (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:72: warning: Member m_data (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:98: warning: Found unknown command '\index' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:40: warning: Member Options (typedef) of class Avogadro::Core::CrystalTools is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:50: warning: The following parameter of Avogadro::Core::CrystalTools::rotateToStandardOrientation(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:65: warning: The following parameters of Avogadro::Core::CrystalTools::setVolume(Molecule &molecule, Real newVolume, Options opts=None) are not documented: parameter 'molecule' parameter 'newVolume' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:75: warning: The following parameter of Avogadro::Core::CrystalTools::niggliReduce(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:97: warning: The following parameter of Avogadro::Core::CrystalTools::buildSupercell(Molecule &molecule, unsigned int a, unsigned int b, unsigned int c) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:109: warning: The following parameters of Avogadro::Core::CrystalTools::setCellMatrix(Molecule &molecule, const Matrix3 &newCellColMatrix, Options opt=None) are not documented: parameter 'molecule' parameter 'newCellColMatrix' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:124: warning: Member data() const (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:227: warning: Member setName(const std::string &name_) (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:228: warning: Member name() const (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:230: warning: Member setCubeType(Type type) (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:231: warning: Member cubeType() const (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:239: warning: Member m_data (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:240: warning: Member m_min (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:240: warning: Member m_max (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:240: warning: Member m_spacing (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:241: warning: Member m_points (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:242: warning: Member m_minValue (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:242: warning: Member m_maxValue (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:243: warning: Member m_name (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:244: warning: Member m_cubeType (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:245: warning: Member m_lock (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:194: warning: The following parameter of Avogadro::Core::Cube::setValue(unsigned int i, float value) is not documented: parameter 'value' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:33: warning: Member operator*() (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:37: warning: Member begin() (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:39: warning: Member end() const (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:43: warning: Member operator++() (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:45: warning: Member operator!=(const DihedralIterator &other) (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:229: warning: Member symmetry() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:230: warning: Member atomIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:231: warning: Member atomIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:232: warning: Member moIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:233: warning: Member moIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:234: warning: Member gtoIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:235: warning: Member gtoIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:236: warning: Member cIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:237: warning: Member cIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:238: warning: Member gtoA() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:239: warning: Member gtoA() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:240: warning: Member gtoC() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:241: warning: Member gtoC() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:242: warning: Member gtoCN() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:248: warning: Member moMatrix(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:256: warning: Member moMatrix(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:264: warning: Member moEnergy(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:272: warning: Member moEnergy(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:280: warning: Member moOccupancy(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:288: warning: Member moOccupancy(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:296: warning: Member moNumber(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:304: warning: Member moNumber(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:312: warning: Member densityMatrix() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:313: warning: Member spinDensityMatrix() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/basisset.h:82: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussiansettools.h:35: warning: Member GaussianSetTools(Molecule *mol=nullptr) (function) of class Avogadro::Core::GaussianSetTools is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layer.h:31: warning: Member addAtom(size_t layer) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layer.h:32: warning: Member addAtom(size_t layer, Index atom) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layer.h:33: warning: Member addAtomToActiveLayer(Index atom) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layer.h:34: warning: Member removeAtom(Index atom) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layer.h:35: warning: Member removeLayer(size_t layer) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:34: warning: Member LayerData(std::string save="") (function) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:49: warning: Member boolToString(bool b) (function) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:50: warning: Member stringToBool(std::string b) (function) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:51: warning: Member m_save (variable) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:115: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:116: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:229: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:230: warning: Member layer(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:303: warning: Member atomLabels() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:343: warning: Member addAtom(unsigned char atomicNumber, Vector3 position3d) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:438: warning: Member bondLabels() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:463: warning: Member mesh(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:464: warning: Member mesh(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:466: warning: Member meshCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:468: warning: Member clearMeshes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:476: warning: Member cube(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:477: warning: Member cube(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:479: warning: Member cubeCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:481: warning: Member clearCubes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:488: warning: Member cubes() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:543: warning: Member basisSet() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:564: warning: Member vibrationFrequencies() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:565: warning: Member setVibrationFrequencies(const Array< double > &freq) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:566: warning: Member vibrationIRIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:567: warning: Member setVibrationIRIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:568: warning: Member vibrationRamanIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:569: warning: Member setVibrationRamanIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:570: warning: Member vibrationLx(int mode) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:571: warning: Member setVibrationLx(const Array< Array< Vector3 > > &lx) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:592: warning: Member perceiveBondOrders() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:600: warning: Member coordinate3dCount() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:601: warning: Member setCoordinate3d(int coord) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:602: warning: Member coordinate3d(int index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:603: warning: Member setCoordinate3d(const Array< Vector3 > &coords, int index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:614: warning: Member timeStep(int index, bool &status) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:645: warning: Member addResidue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:646: warning: Member addResidue(Residue &residue) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:647: warning: Member residue(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:649: warning: Member residues() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:650: warning: Member residues() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:775: warning: Member frozenAtomMask() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:782: warning: Member getAtomBonds(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:783: warning: Member getAtomOrders(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:787: warning: Member removeBonds(Index atom) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:789: warning: Member addBonds(const Array< std::pair< Index, Index > > &bonds, const Array< unsigned char > &orders) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:793: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:795: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:797: warning: Member getAtomsAtLayer(size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:799: warning: Member layer() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:800: warning: Member layer() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:785: warning: Member makeBondPair(const Index &a, const Index &b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:813: warning: Member m_data (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:818: warning: Member m_customElementMap (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:821: warning: Member m_positions2d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:822: warning: Member m_positions3d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:823: warning: Member m_atomLabels (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:824: warning: Member m_bondLabels (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:826: warning: Member m_timesteps (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:827: warning: Member m_hybridizations (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:828: warning: Member m_formalCharges (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:829: warning: Member m_forceVectors (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:830: warning: Member m_colors (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:832: warning: Member m_vibrationFrequencies (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:833: warning: Member m_vibrationIRIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:834: warning: Member m_vibrationRamanIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:835: warning: Member m_vibrationLx (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:838: warning: Member m_selectedAtoms (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:840: warning: Member m_meshes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:841: warning: Member m_cubes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:843: warning: Member m_basisSet (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:844: warning: Member m_unitCell (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:845: warning: Member m_residues (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:848: warning: Member m_hallNumber (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:850: warning: Member m_frozenAtomMask (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:70: warning: Member MoleculeInfo(const Molecule *m) (function) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:76: warning: Member clear() (function) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:62: warning: Member mol (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:63: warning: Member visible (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:64: warning: Member locked (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:65: warning: Member enable (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:66: warning: Member settings (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:67: warning: Member layer (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:68: warning: Member loaded (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/nameatomtyper.h:26: warning: Member NameAtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::NameAtomTyper is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class Avogadro::Core::AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:60: warning: Member m_maxDistance (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:61: warning: Member m_binCount (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:62: warning: Member m_bins (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:63: warning: Member m_minPos (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:64: warning: Member m_maxPos (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:65: warning: Member m_cachedArray (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:66: warning: Member m_cachedIndex (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:39: warning: Member SecondaryStructure (enumeration) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:55: warning: Member Residue(std::string &name) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:56: warning: Member Residue(std::string &name, Index &number) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:57: warning: Member Residue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:59: warning: Member Residue(const Residue &other) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:61: warning: Member operator=(Residue other) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:65: warning: Member residueName() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:67: warning: Member setResidueName(std::string &name) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:69: warning: Member residueId() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:71: warning: Member setResidueId(Index &number) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:73: warning: Member chainId() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:75: warning: Member setChainId(const char &id) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:77: warning: Member secondaryStructure() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:82: warning: Member setSecondaryStructure(const SecondaryStructure &ss) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:120: warning: Member hasAtomByIndex(Index index) const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:138: warning: Member m_residueName (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:139: warning: Member m_residueId (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:140: warning: Member m_chainId (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:141: warning: Member m_atomNameMap (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:142: warning: Member m_heterogen (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:143: warning: Member m_color (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:144: warning: Member m_customColorSet (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:145: warning: Member m_secondaryStructure (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:21: warning: Member ResidueData(std::string name, std::map< std::string, int > atomNames, std::vector< std::pair< std::string, std::string > > singleBonds, std::vector< std::pair< std::string, std::string > > doubleBonds) (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:31: warning: Member ResidueData(const ResidueData &other) (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:39: warning: Member operator=(ResidueData other) (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:46: warning: Member residueAtoms() (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:48: warning: Member residueSingleBonds() (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:53: warning: Member residueDoubleBonds() (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h:23: warning: Member RingPerceiver(const Molecule *m=nullptr) (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h:27: warning: Member setMolecule(const Molecule *m) (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h:28: warning: Member molecule() const (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h:31: warning: Member rings() (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/secondarystructure.h:40: warning: Member SecondaryStructureAssigner(Molecule *m=nullptr) (function) of class Avogadro::Core::SecondaryStructureAssigner is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/secondarystructure.h:43: warning: Member assign(Molecule *mol) (function) of class Avogadro::Core::SecondaryStructureAssigner is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.h:137: warning: Member slaterTypes() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.h:138: warning: Member zetas() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.h:139: warning: Member factors() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.h:140: warning: Member PQNs() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.h:141: warning: Member normalizedMatrix() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.h:142: warning: Member densityMatrix() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.h:144: warning: Member outputAll() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/basisset.h:82: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slatersettools.h:33: warning: Member SlaterSetTools(Molecule *mol=nullptr) (function) of class Avogadro::Core::SlaterSetTools is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/symbolatomtyper.h:26: warning: Member SymbolAtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::SymbolAtomTyper is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class Avogadro::Core::AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:27: warning: Member UnitCell(Real a, Real b, Real c, Real alpha, Real beta, Real gamma) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:28: warning: Member UnitCell(const Vector3 &a, const Vector3 &b, const Vector3 &c) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:29: warning: Member UnitCell(const Matrix3 &cellMatrix) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:30: warning: Member UnitCell(const UnitCell &other) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:32: warning: Member operator=(UnitCell other) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:89: warning: Member setFractionalMatrix(const Matrix3 &m) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant.h:31: warning: Member Type (enumeration) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant.h:127: warning: Member operator=(const Variant &variant) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:25: warning: Member Variant(const char *v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:31: warning: Member Variant(const MatrixXf &v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:74: warning: Member setValue(bool v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:85: warning: Member setValue(char v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:96: warning: Member setValue(short v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:107: warning: Member setValue(int v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:118: warning: Member setValue(long v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:129: warning: Member setValue(float v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:140: warning: Member setValue(double v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:151: warning: Member setValue(std::string string) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:162: warning: Member setValue(const char *string) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:168: warning: Member setValue(void *pointer) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:179: warning: Member setValue(MatrixX matrix) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:196: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:207: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:218: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:229: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:246: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:259: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:274: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:289: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:298: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:316: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:325: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variantmap.h:29: warning: Member iterator (typedef) of class Avogadro::Core::VariantMap is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variantmap.h:30: warning: Member const_iterator (typedef) of class Avogadro::Core::VariantMap is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:25: warning: Member ValueType (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:26: warning: Member Parent (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:29: warning: Member value_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:30: warning: Member allocator_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:31: warning: Member reference (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:32: warning: Member const_reference (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:33: warning: Member pointer (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:34: warning: Member const_pointer (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:35: warning: Member iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:36: warning: Member const_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:37: warning: Member reverse_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:38: warning: Member const_reverse_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:39: warning: Member difference_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:40: warning: Member size_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:44: warning: Member ArrayRefContainer(const size_t n, const ValueType &value=ValueType()) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:49: warning: Member ArrayRefContainer(const ArrayRefContainer &other) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:53: warning: Member ArrayRefContainer(InputIterator first, InputIterator last) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:58: warning: Member reref() (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:62: warning: Member deref() (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:69: warning: Member ref() const (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:72: warning: Member m_ref (variable) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:74: warning: Member data (variable) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h:39: warning: Member operator()(const std::string &s1, const std::string &s2) const noexcept (function) of struct Avogadro::Io::CaseInsensitiveComparator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h:34: warning: Member operator()(const unsigned char &c1, const unsigned char &c2) const (function) of struct Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cjsonformat.h:54: warning: Member deserialize(std::istream &in, Core::Molecule &molecule, bool json) (function) of class Avogadro::Io::CjsonFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cjsonformat.h:55: warning: Member serialize(std::ostream &out, const Core::Molecule &molecule, bool json) (function) of class Avogadro::Io::CjsonFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cjsonformat.h:54: warning: Member deserialize(std::istream &in, Core::Molecule &molecule, bool json) (function) of class Avogadro::Io::CjsonFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cjsonformat.h:55: warning: Member serialize(std::ostream &out, const Core::Molecule &molecule, bool json) (function) of class Avogadro::Io::CjsonFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cmsgpackformat.h:56: warning: Member m_json (variable) of class Avogadro::Io::CMsgPackFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/pdbformat.h:56: warning: Member perceiveSubstitutedCations(Core::Molecule &molecule) (function) of class Avogadro::Io::PdbFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.h:82: warning: Member BatchJob(const QString &scriptFilePath, QObject *parent=nullptr) (function) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.h:62: warning: Member InvalidBatchId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.h:68: warning: Member InvalidRequestId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.h:75: warning: Member InvalidServerId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h:38: warning: Member Client(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h:227: warning: Member MessageType (enumeration) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h:238: warning: Member m_jsonRpcClient (variable) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h:239: warning: Member m_requests (variable) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h:126: warning: Unsupported xml/html tag found /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgenerator.h:459: warning: Member InputGenerator(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgenerator.h:454: warning: The following parameter of Avogadro::MoleQueue::InputGenerator::InputGenerator(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratordialog.h:37: warning: Member InputGeneratorDialog(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGeneratorDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratordialog.h:38: warning: Member InputGeneratorDialog(const QString &scriptFileName, QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGeneratorDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:128: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:129: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:130: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:131: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:133: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:134: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:135: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:136: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:137: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:138: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jobobject.h:148: warning: Member m_value (variable) of class Avogadro::MoleQueue::JobObject is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jsonrpcclient.h:48: warning: Member JsonRpcClient(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::JsonRpcClient is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jsonrpcclient.h:136: warning: Member m_packetCounter (variable) of class Avogadro::MoleQueue::JsonRpcClient is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jsonrpcclient.h:137: warning: Member m_socket (variable) of class Avogadro::MoleQueue::JsonRpcClient is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuedialog.h:153: warning: Member done(int r) override (slot) of class Avogadro::MoleQueue::MoleQueueDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuedialog.h:34: warning: Member MoleQueueDialog(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuemanager.h:35: warning: Member MoleQueueManager(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:85: warning: Member data(const QModelIndex &idx, int role) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:86: warning: Member flags(const QModelIndex &idx=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:87: warning: Member headerData(int section, Qt::Orientation orientation, int role) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:89: warning: Member index(int row, int column, const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:91: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:92: warning: Member rowCount(const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:93: warning: Member columnCount(const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuewidget.h:33: warning: Member MoleQueueWidget(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuewidget.h:127: warning: Member batchMode() const (function) of class Avogadro::MoleQueue::MoleQueueWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:96: warning: Member Container (typedef) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:99: warning: Member ValueType (typedef) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:119: warning: Member Array(const size_t n, const ValueType &value=ValueType()) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:124: warning: Member Array(InputIterator first, InputIterator last) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:156: warning: Member data() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:158: warning: Member constData() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:160: warning: Member size() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:162: warning: Member max_size() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:164: warning: Member empty() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:166: warning: Member capacity() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:168: warning: Member reserve(const size_t &sz) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:174: warning: Member resize(const size_t &sz, const ValueType &t=ValueType()) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:180: warning: Member clear() (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:186: warning: Member begin() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:190: warning: Member begin() (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:188: warning: Member end() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:196: warning: Member end() (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:202: warning: Member rbegin() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:206: warning: Member rbegin() (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:204: warning: Member rend() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:212: warning: Member rend() (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:218: warning: Member front() (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:224: warning: Member front() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:226: warning: Member back() (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:232: warning: Member back() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:235: warning: Member assign(InputIterator first, InputIterator last) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:241: warning: Member assign(size_type n, const value_type &val) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:247: warning: Member push_back(const ValueType &v) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:253: warning: Member pop_back() (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:259: warning: Member insert(iterator position, const value_type &val) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:265: warning: Member insert(iterator position, size_type n, const value_type &val) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:272: warning: Member insert(iterator position, InputIterator first, InputIterator last) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:278: warning: Member erase(iterator position) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:284: warning: Member erase(iterator first, iterator last) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:290: warning: Member operator[](const std::size_t &idx) const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:295: warning: Member operator[](const std::size_t &idx) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:301: warning: Member at(const std::size_t &idx) const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:304: warning: Member operator=(const std::vector< OtherT > &v) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:312: warning: Member operator=(const Array< OtherT > &v) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:319: warning: Member operator=(const Array &v) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:328: warning: Member swap(Array< ValueType > &other) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:351: warning: Member d (variable) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h:37: warning: Member ColorButton(QWidget *parent=0) (function) of class Avogadro::QtGui::ColorButton is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h:38: warning: Member ColorButton(const QColor &initial, QWidget *parent=0) (function) of class Avogadro::QtGui::ColorButton is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h:51: warning: argument 'custom' of command @param is not found in the argument list of ColorButton::setDialogTitle(const QString title="") /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h:51: warning: The following parameter of Avogadro::QtGui::ColorButton::setDialogTitle(const QString title="") is not documented: parameter 'title' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:41: warning: Member splitVertical() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:42: warning: Member splitHorizontal() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:43: warning: Member closeView() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:30: warning: Member ContainerWidget(QWidget *parent=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:34: warning: Member setViewWidget(QWidget *widget) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:35: warning: Member viewWidget() (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:37: warning: Member setActive(bool active) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:38: warning: Member isActive() const (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/customelementdialog.h:31: warning: Member CustomElementDialog(Molecule &mol, QWidget *parent=nullptr) (function) of class Avogadro::QtGui::CustomElementDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/extensionplugin.h:44: warning: Member ExtensionPlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:25: warning: Member Mode (enumeration) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:66: warning: Member setFileName(const QString &fname) (slot) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:63: warning: Member fileNameChanged(const QString &filename) (signal) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:31: warning: Member FileBrowseWidget(QWidget *theParent=nullptr) (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:34: warning: Member fileName() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:36: warning: Member validFileName() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:38: warning: Member browseButton() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:39: warning: Member lineEdit() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:41: warning: Member setMode(Mode m) (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:42: warning: Member mode() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/generichighlighter.h:91: warning: Member highlightBlock(const QString &text) override (function) of class Avogadro::QtGui::GenericHighlighter is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/hydrogentools.h:77: warning: The following parameters of Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const RWAtom &atom, int numberOfHydrogens, std::vector< Vector3 > &positions) are not documented: parameter 'atom' parameter 'numberOfHydrogens' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:35: warning: Member refresh() (slot) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:37: warning: Member filterTextChanged(const QString &) (slot) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:39: warning: Member activated() (slot) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:41: warning: Member currentChanged(const QModelIndex &selected, const QModelIndex &deselected) (slot) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:45: warning: Member performInsert(const QString &fileName, bool crystal) (signal) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:28: warning: Member InsertFragmentDialog(QWidget *parent=nullptr, QString directory="molecules") (function) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:32: warning: Member fileName() (function) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/interfacescript.h:612: warning: Member finished() (signal) of class Avogadro::QtGui::InterfaceScript is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/interfacescript.h:457: warning: Member InterfaceScript(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::InterfaceScript is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/interfacescript.h:452: warning: The following parameter of Avogadro::QtGui::InterfaceScript::InterfaceScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:128: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:129: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:130: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:131: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:133: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:134: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:135: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:136: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:137: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:138: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:128: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:129: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:130: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:131: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:133: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:134: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:135: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:136: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:137: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:138: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:31: warning: Member ColumnType (enumeration) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:68: warning: Member updateRows() (slot) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:40: warning: Member LayerModel(QObject *p=0) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:42: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:43: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:44: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:46: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:48: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:50: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:52: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:55: warning: Member addItem() (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:56: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:57: warning: Member addMolecule(const Molecule *mol) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:58: warning: Member setActiveLayer(int index, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:59: warning: Member removeItem(int row, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:61: warning: Member items() const (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:63: warning: Member flipVisible(size_t row) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:64: warning: Member flipLocked(size_t row) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:65: warning: Member layerCount() const (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.h:29: warning: Member removeLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.h:30: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.h:31: warning: Member setActiveLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:115: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:116: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:132: warning: Member duplicate(const Vector3i &c, const Vector3f &pos) (function) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:139: warning: Member m_iso (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:147: warning: Member m_normals (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:148: warning: Member m_indices (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:149: warning: Member m_progmin (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:150: warning: Member m_progmax (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:158: warning: Member a2iVertexOffset[8][3] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:159: warning: Member a2iEdgeConnection[12][2] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:160: warning: Member a2fEdgeDirection[12][3] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:161: warning: Member a2iTetrahedronEdgeConnection[6][2] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:162: warning: Member a2iTetrahedronsInACube[6][4] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:163: warning: Member aiTetrahedronEdgeFlags[16] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:164: warning: Member a2iTetrahedronTriangles[16][7] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:165: warning: Member aiCubeEdgeFlags[256] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:166: warning: Member a2iTriangleConnectionTable[256][16] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:52: warning: The following parameters of Avogadro::QtGui::MeshGenerator::MeshGenerator(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false, QObject *parent=nullptr) are not documented: parameter 'reverse' parameter 'parent' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:52: warning: found documented return type for Avogadro::QtGui::MeshGenerator::MeshGenerator that does not return anything /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:68: warning: The following parameter of Avogadro::QtGui::MeshGenerator::initialize(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false) is not documented: parameter 'reverse' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:125: warning: The following parameter of Avogadro::QtGui::MeshGenerator::offset(float val1, float val2) is not documented: parameter 'val2' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:48: warning: Member Molecule(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:97: warning: Member addAtom(unsigned char number, Vector3 position3d, Index uniqueId=MaxIndex) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:135: warning: Member atomUniqueIds() (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:157: warning: Member addBonds(const Core::Array< std::pair< Index, Index > > &bonds, const Core::Array< unsigned char > &orders) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:230: warning: Member bondUniqueIds() (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:232: warning: Member findAtomUniqueId(Index index) const (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:233: warning: Member findBondUniqueId(Index index) const (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:235: warning: Member undoMolecule() (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:237: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:238: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:229: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:230: warning: Member layer(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:303: warning: Member atomLabels() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:343: warning: Member addAtom(unsigned char atomicNumber, Vector3 position3d) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:438: warning: Member bondLabels() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:463: warning: Member mesh(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:464: warning: Member mesh(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:466: warning: Member meshCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:468: warning: Member clearMeshes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:476: warning: Member cube(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:477: warning: Member cube(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:479: warning: Member cubeCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:481: warning: Member clearCubes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:488: warning: Member cubes() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:543: warning: Member basisSet() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:564: warning: Member vibrationFrequencies() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:565: warning: Member setVibrationFrequencies(const Array< double > &freq) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:566: warning: Member vibrationIRIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:567: warning: Member setVibrationIRIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:568: warning: Member vibrationRamanIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:569: warning: Member setVibrationRamanIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:570: warning: Member vibrationLx(int mode) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:571: warning: Member setVibrationLx(const Array< Array< Vector3 > > &lx) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:592: warning: Member perceiveBondOrders() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:600: warning: Member coordinate3dCount() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:601: warning: Member setCoordinate3d(int coord) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:602: warning: Member coordinate3d(int index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:603: warning: Member setCoordinate3d(const Array< Vector3 > &coords, int index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:614: warning: Member timeStep(int index, bool &status) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:645: warning: Member addResidue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:646: warning: Member addResidue(Residue &residue) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:647: warning: Member residue(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:649: warning: Member residues() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:650: warning: Member residues() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:775: warning: Member frozenAtomMask() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:782: warning: Member getAtomBonds(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:783: warning: Member getAtomOrders(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:787: warning: Member removeBonds(Index atom) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:789: warning: Member addBonds(const Array< std::pair< Index, Index > > &bonds, const Array< unsigned char > &orders) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:793: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:795: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:797: warning: Member getAtomsAtLayer(size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:799: warning: Member layer() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:800: warning: Member layer() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:785: warning: Member makeBondPair(const Index &a, const Index &b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:813: warning: Member m_data (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:818: warning: Member m_customElementMap (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:821: warning: Member m_positions2d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:822: warning: Member m_positions3d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:823: warning: Member m_atomLabels (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:824: warning: Member m_bondLabels (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:826: warning: Member m_timesteps (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:827: warning: Member m_hybridizations (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:828: warning: Member m_formalCharges (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:829: warning: Member m_forceVectors (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:830: warning: Member m_colors (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:832: warning: Member m_vibrationFrequencies (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:833: warning: Member m_vibrationIRIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:834: warning: Member m_vibrationRamanIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:835: warning: Member m_vibrationLx (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:838: warning: Member m_selectedAtoms (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:840: warning: Member m_meshes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:841: warning: Member m_cubes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:843: warning: Member m_basisSet (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:844: warning: Member m_unitCell (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:845: warning: Member m_residues (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:848: warning: Member m_hallNumber (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:850: warning: Member m_frozenAtomMask (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:173: warning: argument 'a' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:173: warning: argument 'b' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:173: warning: The following parameters of Avogadro::QtGui::Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) are not documented: parameter 'atomId1' parameter 'atomId2' for compound Bond... Generating docs for compound BondTemplate< Molecule_T >... Generating docs for compound Color3f... Generating docs for compound CoordinateBlockGenerator... Generating docs for compound CoordinateSet< T >... Generating docs for compound CrystalTools... Generating docs for compound Cube... Generating docs for compound DihedralIterator... Generating docs for compound Elements... Generating docs for compound GaussianSet... Generating docs for compound GaussianSetTools... Generating docs for compound Graph... Generating docs for compound hBondRecord... Generating docs for compound Layer... Generating docs for compound LayerData... Generating docs for compound LayerManager... Generating docs for compound Mesh... Generating docs for compound Molecule... Generating docs for compound MoleculeInfo... Generating docs for compound Mutex... Generating docs for compound NameAtomTyper... Generating docs for compound NeighborPerceiver... Generating docs for compound Residue... Generating docs for compound ResidueData... Generating docs for compound RingPerceiver... Generating docs for compound SecondaryStructureAssigner... Generating docs for compound SharedMutex... Generating docs for compound SlaterSet... Generating docs for compound SlaterSetTools... Generating docs for compound SpaceGroups... Generating docs for compound SymbolAtomTyper... Generating docs for compound UnitCell... Generating docs for compound Variant... Generating docs for compound VariantMap... Generating docs for compound ArrayRefContainer< T >... Generating docs for compound CaseInsensitiveComparator... Generating docs for nested compound CaseInsensitiveComparator::lowerCaseCompare... Generating docs for compound CjsonFormat... Generating docs for compound CmlFormat... Generating docs for compound CMsgPackFormat... Generating docs for compound DcdFormat... Generating docs for compound FileFormat... Generating docs for compound FileFormatManager... Generating docs for compound GromacsFormat... Generating docs for compound Hdf5DataFormat... Generating docs for compound LammpsDataFormat... Generating docs for compound LammpsTrajectoryFormat... Generating docs for compound MdlFormat... Generating docs for compound MMTFFormat... Generating docs for compound OutcarFormat... Generating docs for compound PdbFormat... Generating docs for compound PoscarFormat... Generating docs for compound TrrFormat... Generating docs for compound TurbomoleFormat... Generating docs for compound XyzFormat... Generating docs for compound BatchJob... Generating docs for compound Client... Generating docs for compound InputGenerator... Generating docs for compound InputGeneratorDialog... Generating docs for compound InputGeneratorWidget... Generating docs for compound JobObject... Generating docs for compound JsonRpcClient... Generating docs for compound MoleQueueDialog... Generating docs for compound MoleQueueManager... Generating docs for compound MoleQueueQueueListModel... Generating docs for compound MoleQueueWidget... Generating docs for compound Array< T >... Generating docs for compound BackgroundFileFormat... Generating docs for compound ColorButton... Generating docs for compound ContainerWidget... Generating docs for compound CustomElementDialog... Generating docs for compound ElementDetail... Generating docs for compound ElementItem... Generating docs for compound ElementTranslator... Generating docs for compound ExtensionPlugin... Generating docs for compound ExtensionPluginFactory... Generating docs for compound FileBrowseWidget... Generating docs for compound FileFormatDialog... Generating docs for compound GenericHighlighter... Generating docs for nested compound GenericHighlighter::Rule... Generating docs for compound HydrogenTools... Generating docs for compound InsertFragmentDialog... Generating docs for compound InterfaceScript... Generating docs for compound InterfaceWidget... Generating docs for compound JsonWidget... Generating docs for compound LayerModel... Generating docs for compound MeshGenerator... Generating docs for compound Molecule... Gene/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:66: warning: Member setActiveMolecule(QObject *active) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:67: warning: Member addItem(Avogadro::QtGui::Molecule *item) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:68: warning: Member removeItem(Avogadro::QtGui::Molecule *item) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:69: warning: Member itemChanged() (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:63: warning: Member moleculeStateChanged(Avogadro::QtGui::Molecule *) (signal) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:40: warning: Member MoleculeModel(QObject *p=nullptr) (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:42: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:43: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:44: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:46: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:48: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:50: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:52: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:55: warning: Member clear() (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:57: warning: Member molecules() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:58: warning: Member activeMolecules() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:60: warning: Member activeMolecule() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:23: warning: Member m_molecule (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:24: warning: Member m_modelView (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:25: warning: Member m_dirty (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:26: warning: Member m_active (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:53: warning: Member splitHorizontal() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:54: warning: Member splitVertical() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:55: warning: Member createView() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:56: warning: Member removeView() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:50: warning: Member activeWidgetChanged(QWidget *widget) (signal) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:33: warning: Member MultiViewWidget(QWidget *parent=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:37: warning: Member addWidget(QWidget *widget) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:44: warning: Member setActiveWidget(QWidget *widget) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:46: warning: Member setFactory(ViewFactory *factory) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:47: warning: Member setDefaultView(const QString &viewName) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/persistentatom.h:24: warning: Member MoleculeType (typedef) of class Avogadro::QtGui::PersistentAtom is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/persistentatom.h:25: warning: Member AtomType (typedef) of class Avogadro::QtGui::PersistentAtom is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/persistentbond.h:24: warning: Member MoleculeType (typedef) of class Avogadro::QtGui::PersistentBond is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/persistentbond.h:25: warning: Member BondType (typedef) of class Avogadro::QtGui::PersistentBond is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pluginlayermanager.h:26: warning: Member PluginLayerManager(const std::string &name="undef") (function) of class Avogadro::QtGui::PluginLayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pluginlayermanager.h:32: warning: Member atomLocked(size_t atom) const (function) of class Avogadro::QtGui::PluginLayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:115: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:116: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:139: warning: Member m_debug (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:140: warning: Member m_pythonInterpreter (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:141: warning: Member m_scriptFilePath (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:142: warning: Member m_errors (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:143: warning: Member m_process (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:31: warning: argument 'scriptFilePath_' of command @param is not found in the argument list of PythonScript::PythonScript(QObject *parent_=nullptr) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:675: warning: Member RWAtom(RWMolecule *m, Index i) (function) of class Avogadro::QtGui::RWAtom is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:176: warning: Member selected() const (function) of class Avogadro::Core::AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class Avogadro::Core::AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class Avogadro::Core::AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:187: warning: Member label() const (function) of class Avogadro::Core::AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class Avogadro::Core::AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:682: warning: Member RWBond(RWMolecule *m, Index i) (function) of class Avogadro::QtGui::RWBond is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class Avogadro::Core::BondTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class Avogadro::Core::BondTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.h:29: warning: Member removeLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.h:30: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.h:31: warning: Member setActiveLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:115: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:116: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:75: warning: Member molecule() (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:76: warning: Member molecule() const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:226: warning: Member atomLabel(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:227: warning: Member setAtomLabel(Index atomId, const std::string &label, const QString &undoText=tr("Change Atom Label")) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:241: warning: Member setAtomPosition2d(Index, const Vector2 &) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:242: warning: Member atomPosition2d(Index) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:243: warning: Member atomPositions2d() const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:298: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:299: warning: Member layer(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:656: warning: Member findAtomUniqueId(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:657: warning: Member findBondUniqueId(Index bondId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:664: warning: Member m_interactive (variable) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:666: warning: Member m_undoStack (variable) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:628: warning: The following parameter of Avogadro::QtGui::RWMolecule::setForceVector(Index atomId, const Vector3 &pos, const QString &undoText=QStringLiteral("Change Force Vectors")) is not documented: parameter 'atomId' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:30: warning: Member UndoCommand(RWMolecule &m) (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:36: warning: Member positions3d() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:37: warning: Member atomUniqueIds() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:38: warning: Member bondUniqueIds() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:40: warning: Member m_mol (variable) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:41: warning: Member m_molecule (variable) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:90: warning: Member drawablesChanged() (signal) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:42: warning: Member ScenePlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:51: warning: Member processEditable(const RWMolecule &molecule, Rendering::GroupNode &node) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:80: warning: Member setupWidget() (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:87: warning: Member defaultBehavior() const (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:93: warning: Member m_layerManager (variable) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:55: warning: Member addItem(Avogadro::QtGui::ScenePlugin *item) (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:56: warning: Member removeItem(Avogadro::QtGui::ScenePlugin *item) (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:57: warning: Member itemChanged() (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:51: warning: Member pluginStateChanged(Avogadro::QtGui::ScenePlugin *) (signal) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:52: warning: Member pluginConfigChanged() (signal) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:30: warning: Member ScenePluginModel(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:32: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:33: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:34: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:36: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:38: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:40: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:42: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:45: warning: Member clear() (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:47: warning: Member scenePlugins() const (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:48: warning: Member activeScenePlugins() const (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scriptloader.h:35: warning: Member ScriptLoader(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::ScriptLoader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scriptloader.h:44: warning: Member queryProgramName(const QString &scriptFilePath, QString &displayName) (function) of class Avogadro::QtGui::ScriptLoader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.h:20: warning: Member SortFilterTreeProxyModel(QObject *parent=nullptr) (function) of class Avogadro::QtGui::SortFilterTreeProxyModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.h:25: warning: Member filterAcceptsRow(int sourceRow, const QModelIndex &sourceParent) const (function) of class Avogadro::QtGui::SortFilterTreeProxyModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.h:30: warning: Member setSourceRoot(const QModelIndex &sourceRoot) (function) of class Avogadro::QtGui::SortFilterTreeProxyModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/toolplugin.h:152: warning: Member setEditMolecule(QtGui::RWMolecule *) (slot) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/toolplugin.h:44: warning: Member ToolPlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/toolplugin.h:181: warning: Member createInstance(QObject *parent=nullptr)=0 (function) of class Avogadro::QtGui::ToolPluginFactory is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/toolplugin.h:182: warning: Member identifier() const =0 (function) of class Avogadro::QtGui::ToolPluginFactory is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:27: warning: Member UnitCell(Real a, Real b, Real c, Real alpha, Real beta, Real gamma) (function) of class Avogadro::QtGui::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:28: warning: Member UnitCell(const Vector3 &a, const Vector3 &b, const Vector3 &c) (function) of class Avogadro::QtGui::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:29: warning: Member UnitCell(const Matrix3 &cellMatrix) (function) of class Avogadro::QtGui::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:30: warning: Member UnitCell(const UnitCell &other) (function) of class Avogadro::QtGui::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:32: warning: Member operator=(UnitCell other) (function) of class Avogadro::QtGui::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:89: warning: Member setFractionalMatrix(const Matrix3 &m) (function) of class Avogadro::QtGui::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl/glwidget.h:105: warning: Member rendererInvalid() (signal) of class Avogadro::QtOpenGL::GLWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl/glwidget.h:49: warning: Member GLWidget(QWidget *parent=nullptr) (function) of class Avogadro::QtOpenGL::GLWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:80: warning: Member GamessukOut(const QString &filename, GaussianSet *basis) (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:82: warning: Member GamessukOutNoQt(const std::string &filename, GaussianSet *basis) (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:83: warning: Member outputParsedData() (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.h:54: warning: Member outputAll() (function) of class Avogadro::QuantumIO::GaussianFchk is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:37: warning: Member outputCoord() (function) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:38: warning: Member outputBasis() (function) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:51: warning: Member atomLabels (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:52: warning: Member coordinates (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:54: warning: Member shellLabels (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:55: warning: Member shells (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:58: warning: Member gtoIndicies (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:62: warning: Member gtoExponents (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:63: warning: Member gtoCoefficients (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:66: warning: Member moEnergies (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:68: warning: Member moVectors (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:72: warning: Member nShell (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:73: warning: Member nBasisFunctions (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:74: warning: Member nElectrons (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/mopacaux.h:24: warning: Member outputAll() (function) of class Avogadro::QuantumIO::MopacAux is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemlog.h:24: warning: Member outputAll() (function) of class Avogadro::QuantumIO::NWChemLog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/ambientocclusionspheregeometry.h:37: warning: Member AmbientOcclusionSphereGeometry(const AmbientOcclusionSphereGeometry &other) (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/ambientocclusionspheregeometry.h:40: warning: Member operator=(AmbientOcclusionSphereGeometry) (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/ambientocclusionspheregeometry.h:81: warning: Member spheres() const (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:49: warning: Member MeshGeometry(const MeshGeometry &other) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:52: warning: Member operator=(MeshGeometry) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:138: warning: Member vertices() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:139: warning: Member triangles() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:46: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:38: warning: Member LineStripGeometry(const LineStripGeometry &other) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:41: warning: Member operator=(LineStripGeometry) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:35: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.h:28: warning: Member ArrowGeometry(const ArrowGeometry &other) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.h:31: warning: Member operator=(ArrowGeometry) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.h:50: warning: Member drawLine(const Vector3f &start, const Vector3f &end, double lineWidth) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.h:51: warning: Member drawCone(const Vector3f &base, const Vector3f &cap, double baseRadius, double) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.h:25: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/beziergeometry.h:20: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BezierGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:93: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:96: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:98: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:100: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:68: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:80: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:82: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:84: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:87: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h:18: warning: Member BSplineGeometry(bool flat) (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:68: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:80: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:82: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h:21: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:93: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:96: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:98: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:100: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:84: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:87: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bufferobject.h:31: warning: Member ObjectType (enumeration) of class Avogadro::Rendering::BufferObject is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bufferobject.h:37: warning: Member BufferObject(ObjectType type=ArrayBuffer) (function) of class Avogadro::Rendering::BufferObject is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/camera.h:44: warning: Member Camera(const Camera &o) (function) of class Avogadro::Rendering::Camera is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/camera.h:45: warning: Member operator=(const Camera &o) (function) of class Avogadro::Rendering::Camera is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:29: warning: Member Cartoon(float minRadius, float maxRadius) (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:32: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, size_t group, size_t id, Core::Residue::SecondaryStructure sec) (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h:18: warning: Member BSplineGeometry(bool flat) (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:68: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:80: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:82: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:30: warning: Member ELIPSE_RATIO (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:84: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:37: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const override (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:41: warning: Member computeScale(size_t index, float t, float scale) const override (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h:21: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:93: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:100: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:43: warning: Member m_type (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:44: warning: Member m_minRadius (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:44: warning: Member m_maxRadius (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:87: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:75: warning: Member ColorNormalVertex(const Vector3ub &c, const Vector3f &n, const Vector3f &v) (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:79: warning: Member colorOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:80: warning: Member normalOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:84: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:69: warning: Member color (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:70: warning: Member unusedAlign (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:71: warning: Member normal (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:72: warning: Member vertex (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:73: warning: Member padding[4] (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:48: warning: Member ColorTextureVertex(const Vector3f &p, const Vector3ub &c, const Vector2f &t, const Vector2f &t2=Vector2f::Zero()) (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:53: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:54: warning: Member colorOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:55: warning: Member textureCoordOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:60: warning: Member textureCoord2Offset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:42: warning: Member vertex (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:43: warning: Member color (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:44: warning: Member unusedAlign (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:45: warning: Member textureCoord (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:46: warning: Member textureCoord2 (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:68: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:80: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:82: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:84: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:93: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:94: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const =0 (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:96: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:98: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:100: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:87: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:123: warning: Member position() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:124: warning: Member setPosition(const Vector3f &pos) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:126: warning: Member direction() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:127: warning: Member setDirection(const Vector3f &dir) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:129: warning: Member length() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:130: warning: Member setLength(float l) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:132: warning: Member radius() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:133: warning: Member setRadius(float r) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:18: warning: Member CylinderColor(const Vector3f &pos1, const Vector3f &pos2, float r, const Vector3ub &c, const Vector3ub &c2=Vector3ub::Zero()) (function) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:27: warning: Member end1 (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:28: warning: Member end2 (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:29: warning: Member radius (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:30: warning: Member color (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:31: warning: Member color2 (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:45: warning: Member CylinderGeometry(const CylinderGeometry &other) (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:48: warning: Member operator=(CylinderGeometry) (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:127: warning: Member cylinders() const (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:38: warning: Member DashedLineGeometry(const DashedLineGeometry &other) (function) of class Avogadro::Rendering::DashedLineGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:41: warning: Member operator=(DashedLineGeometry) (function) of class Avogadro::Rendering::DashedLineGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:30: warning: Member PackedVertex(const Vector3f &v, const Vector4ub &c) (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:33: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:34: warning: Member colorOffset() (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:27: warning: Member vertex (variable) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:28: warning: Member color (variable) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/camera.h:29: warning: Member projection (variable) of struct Avogadro::Rendering::EigenData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/camera.h:30: warning: Member modelView (variable) of struct Avogadro::Rendering::EigenData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometrynode.h:70: warning: Member drawables() const (function) of class Avogadro::Rendering::GeometryNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometrynode.h:99: warning: Member m_drawables (variable) of class Avogadro::Rendering::GeometryNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:38: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:39: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:40: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:41: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:42: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:43: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:44: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:45: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:46: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:47: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:48: warning: Member visit(LineStripGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:89: warning: Member camera() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:93: warning: Member overlayCamera() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:97: warning: Member scene() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:101: warning: Member solidPipeline() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:112: warning: Member m_perspectiveFrustum (variable) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:113: warning: Member m_orthographicFrustum (variable) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:30: warning: Member GLRenderVisitor(const Camera &camera=Camera(), const TextRenderStrategy *trs=nullptr) (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:47: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:48: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:49: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:50: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:52: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:53: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:54: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:55: warning: Member visit(TextLabel2D &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:56: warning: Member visit(TextLabel3D &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:57: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:59: warning: Member setCamera(const Camera &camera_) (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:60: warning: Member camera() const (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:28: warning: Member NodeType (enumeration) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:43: warning: Member GroupNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:96: warning: Member children() const (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:109: warning: Member clear(NodeType type) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:110: warning: Member m_children (variable) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:54: warning: The following parameter of Avogadro::Rendering::GroupNode::addChild(Node *node, NodeType ui=NodeType::GEOMETRY) is not documented: parameter 'ui' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:38: warning: Member NodeInfo(Node *n, NodeType u) (function) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:39: warning: Member ui (variable) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:40: warning: Member node (variable) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:27: warning: Member operator==(const Identifier &other) const (function) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:33: warning: Member operator!=(const Identifier &other) const (function) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:35: warning: Member isValid() const (function) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:37: warning: Member molecule (variable) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:38: warning: Member type (variable) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:39: warning: Member index (variable) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:41: warning: Member Line(float r) (function) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:49: warning: Member add(Point *point) (function) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:54: warning: Member points (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:55: warning: Member dirty (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:56: warning: Member flat (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:57: warning: Member radius (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:58: warning: Member vbo (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:59: warning: Member ibo (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:60: warning: Member numberOfVertices (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:61: warning: Member numberOfIndices (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:38: warning: Member LineStripGeometry(const LineStripGeometry &other) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:41: warning: Member operator=(LineStripGeometry) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:35: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of LineStripGeometry::addLineStrip(const Core::Array< Vector3f > &vertices, float lineWidth) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:30: warning: Member PackedVertex(const Vector3f &v, const Vector4ub &c) (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:31: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:32: warning: Member colorOffset() (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:27: warning: Member vertex (variable) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:28: warning: Member color (variable) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:49: warning: Member MeshGeometry(const MeshGeometry &other) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:52: warning: Member operator=(MeshGeometry) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:138: warning: Member vertices() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:139: warning: Member triangles() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:46: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:67: warning: argument 'colors' of command @param is not found in the argument list of MeshGeometry::addVertices(const Core::Array< Vector3f > &vertices, const Core::Array< Vector3f > &normals) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:32: warning: Member PackedVertex(const Vector4ub &c, const Vector3f &n, const Vector3f &v) (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:38: warning: Member colorOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:39: warning: Member normalOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:40: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:27: warning: Member color (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:28: warning: Member normal (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:29: warning: Member vertex (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:30: warning: Member padding[4] (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:37: warning: Member PLYVisitor(const Camera &camera) (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:40: warning: Member begin() (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:41: warning: Member end() (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:47: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:48: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:49: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:50: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:52: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:53: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:54: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:55: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:56: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:57: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:59: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:60: warning: Member camera() const (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:62: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:63: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:64: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:30: warning: Member Point(const Vector3f &p, const Vector3ub &c, size_t i) (function) of struct Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:33: warning: Member pos (variable) of struct Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:34: warning: Member color (variable) of struct Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:35: warning: Member id (variable) of struct Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:29: warning: Member POVRayVisitor(const Camera &camera) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:32: warning: Member begin() (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:33: warning: Member end() (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:39: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:40: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:41: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:42: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:43: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:44: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:45: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:46: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:47: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:48: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:49: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:51: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:52: warning: Member camera() const (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:54: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:55: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:56: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:58: warning: Member operator==(const Identifier &other) const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:64: warning: Member operator!=(const Identifier &other) const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:69: warning: Member isValid() const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:71: warning: Member molecule (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:72: warning: Member type (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:73: warning: Member index (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:49: warning: Member MeshGeometry(const MeshGeometry &other) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:52: warning: Member operator=(MeshGeometry) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:138: warning: Member vertices() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:139: warning: Member triangles() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:46: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:38: warning: Member LineStripGeometry(const LineStripGeometry &other) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:41: warning: Member operator=(LineStripGeometry) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:35: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:108: warning: Member rootNode() const (function) of class Avogadro::Rendering::Scene is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h:37: warning: Member Shader(Type type=Unknown, const std::string &source="") (function) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h:70: warning: Member m_type (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h:71: warning: Member m_handle (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h:72: warning: Member m_dirty (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h:74: warning: Member m_source (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h:75: warning: Member m_error (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:23: warning: Member vertexShader (variable) of struct Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:24: warning: Member fragmentShader (variable) of struct Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:25: warning: Member program (variable) of struct Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:147: warning: Member setUniformValue(const std::string &name, const Eigen::Matrix4f &matrix) (function) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:156: warning: Member setAttributeArrayInternal(const std::string &name, void *buffer, Avogadro::Type type, int tupleSize, NormalizeOption normalize) (function) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:159: warning: Member m_handle (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:160: warning: Member m_vertexShader (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:161: warning: Member m_fragmentShader (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:163: warning: Member m_linked (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:165: warning: Member m_error (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:167: warning: Member m_attributes (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:169: warning: Member m_textureUnitBindings (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:170: warning: Member m_boundTextureUnits (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h:53: warning: Member setAoEnabled(bool enabled) (function) of class Avogadro::Rendering::SolidPipeline is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h:59: warning: Member setAoStrength(float strength) (function) of class Avogadro::Rendering::SolidPipeline is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h:65: warning: Member setEdEnabled(bool enabled) (function) of class Avogadro::Rendering::SolidPipeline is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h:75: warning: Member setEdStrength(float strength) (function) of class Avogadro::Rendering::SolidPipeline is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:95: warning: Member Sphere(const Vector3f &position_, float radius_, Primitive::Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:101: warning: Member position() const (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:102: warning: Member setPosition(const Vector3f &pos) (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:104: warning: Member radius() const (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:105: warning: Member setRadius(float r) (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:19: warning: Member SphereColor(Vector3f centre, float r, Vector3ub c) (function) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:22: warning: Member center (variable) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:23: warning: Member radius (variable) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:24: warning: Member color (variable) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:43: warning: Member SphereGeometry(const SphereGeometry &other) (function) of class Avogadro::Rendering::SphereGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:46: warning: Member operator=(SphereGeometry) (function) of class Avogadro::Rendering::SphereGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:101: warning: Member spheres() const (function) of class Avogadro::Rendering::SphereGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. rating docs for compound MoleculeModel... Generating docs for compound MoleculeSystem... Generating docs for compound MultiViewWidget... Generating docs for compound PeriodicTableScene... Generating docs for compound PeriodicTableView... Generating docs for compound PersistentAtom< Molecule_T >... Generating docs for compound PersistentBond< Molecule_T >... Generating docs for compound PluginLayerManager... Generating docs for compound PythonScript... Generating docs for compound RWAtom... Generating docs for compound RWBond... Generating docs for compound RWLayerManager... Generating docs for compound RWMolecule... Generating docs for nested compound RWMolecule::UndoCommand... Generating docs for compound ScenePlugin... Generating docs for compound ScenePluginFactory... Generating docs for compound ScenePluginModel... Generating docs for compound ScriptLoader... Generating docs for compound SortFilterTreeProxyModel... Generating docs for compound ToolPlugin... Generating docs for compound ToolPluginFactory... Generating docs for compound UnitCell... Generating docs for compound ViewFactory... Generating docs for compound ActiveObjects... Generating docs for compound GLWidget... Generating docs for compound QtTextRenderStrategy... Generating docs for compound GamessukOut... Generating docs for compound GAMESSUSOutput... Generating docs for compound GaussianCube... Generating docs for compound GaussianFchk... Generating docs for compound GenericOutput... Generating docs for compound GUKBasisSet... Generating docs for compound MoldenFile... Generating docs for compound MopacAux... Generating docs for compound NWChemJson... Generating docs for compound NWChemLog... Generating docs for compound ORCAOutput... Generating docs for compound AmbientOcclusionSphereGeometry... Generating docs for compound ArcSector... Generating docs for compound ArcStrip... Generating docs for compound ArrowGeometry... Generating docs for compound BezierGeometry... Generating docs for compound BSplineGeometry... Generating docs for compound BufferObject... Generating docs for compound Camera... Generating docs for compound Cartoon... Generating docs for compound ColorNormalVertex... Generating docs for compound ColorTextureVertex... Generating docs for compound CurveGeometry... Generating docs for compound Cylinder... Generating docs for compound CylinderColor... Generating docs for compound CylinderGeometry... Generating docs for compound DashedLineGeometry... Generating docs for nested compound DashedLineGeometry::PackedVertex... Generating docs for compound Drawable... Generating docs for compound EigenData... Generating docs for compound GeometryNode... Generating docs for compound GeometryVisitor... Generating docs for compound GLRenderer... Generating docs for compound GLRenderVisitor... Generating docs for compound GroupNode... Generating docs for nested compound GroupNode::NodeInfo... Generating docs for compound Identifier... Generating docs for compound Line... Generating docs for compound LineStripGeometry... Generating docs for nested compound LineStripGeometry::PackedVertex... Generating docs for compound MeshGeometry... Generating docs for nested compound MeshGeometry::PackedVertex... Generating docs for compound Node... Generating docs for compound PLYVisitor... Generating docs for compound Point... Generating docs for compound POVRayVisitor... Generating docs for compound Primitive... Generating docs for nested compound Primitive::Identifier... Generating docs for compound Quad... Generating docs for compound QuadOutline... Generating docs for compound Scene... Generating docs for compound Shader... Generating docs for compound ShaderInfo... Generating docs for compound ShaderProgram... Generating docs for compound SolidPipeline... Generating docs for compound Sphere... Generating docs for compound SphereColor... Generating docs for compound SphereGeometry... Generating docs for compound TextLabel2D... Generating docs for compound TextLabel3D... Generating docs for compound TextLabelBase... Generating docs for compound TextProperti/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:60: warning: Member TextProperties(const TextProperties &other) (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:63: warning: Member operator=(TextProperties other) (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:64: warning: Member swap(TextProperties &other) (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:66: warning: Member operator==(const TextProperties &other) const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:67: warning: Member operator!=(const TextProperties &other) const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:76: warning: Member pixelHeight() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:83: warning: Member hAlign() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:90: warning: Member vAlign() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:102: warning: Member rotationDegreesCW() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:109: warning: Member fontFamily() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:116: warning: Member fontStyles() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:123: warning: Member bold() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:130: warning: Member italic() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:137: warning: Member underline() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:113: warning: Member minFilter() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:114: warning: Member setMagFilter(FilterOption opt) (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:115: warning: Member magFilter() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:157: warning: Member release() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:159: warning: Member error() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/transformnode.h:25: warning: Member TransformNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::TransformNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:43: warning: Member GroupNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:96: warning: Member children() const (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:28: warning: Member NodeType (enumeration) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:109: warning: Member clear(NodeType type) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:110: warning: Member m_children (variable) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:47: warning: Member visit(GroupNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:48: warning: Member visit(GeometryNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:49: warning: Member visit(Drawable &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:50: warning: Member visit(SphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:52: warning: Member visit(CurveGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:53: warning: Member visit(CylinderGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:54: warning: Member visit(MeshGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:55: warning: Member visit(TextLabel2D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:56: warning: Member visit(TextLabel3D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:57: warning: Member visit(LineStripGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:29: warning: Member VRMLVisitor(const Camera &camera) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:32: warning: Member begin() (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:33: warning: Member end() (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:39: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:40: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:41: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:42: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:43: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:44: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:45: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:46: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:47: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:48: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:49: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:51: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:52: warning: Member camera() const (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:54: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:55: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:56: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h:19: warning: Member ChartDialog(QWidget *p=nullptr) (function) of class Avogadro::VTK::ChartDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h:22: warning: Member chartWidget() (function) of class Avogadro::VTK::ChartDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h:24: warning: Member sizeHint() const override (function) of class Avogadro::VTK::ChartDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h:25: warning: Member minimumSizeHint() const override (function) of class Avogadro::VTK::ChartDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:34: warning: Member Axis (enumeration) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:31: warning: Member ChartWidget(QWidget *p=nullptr) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:40: warning: Member addPlot(const std::vector< float > &x, const std::vector< float > &y, const color4ub &color=color4ub{ 0, 0, 0, 255 }) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:43: warning: Member addSeries(const std::vector< float > &y, const color4ub &color=color4ub{ 0, 0, 0, 255 }) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:46: warning: Member addPlots(const std::vector< std::vector< float > > &plotData, const color4ub &color=color4ub{ 0, 0, 0, 255 }) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:49: warning: Member clearPlots() (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:51: warning: Member setXAxisTitle(const std::string &title) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:53: warning: Member setYAxisTitle(const std::string &title) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:55: warning: Member setTickLabels(Axis a, const std::vector< float > &tickPositions, const std::vector< std::string > &tickLabels) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:58: warning: Member setAxisLimits(Axis a, float min, float max) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:59: warning: Member setXAxisLimits(float min, float max) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:60: warning: Member setYAxisLimits(float min, float max) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:62: warning: Member setFontSize(int size=14) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:63: warning: Member setLineWidth(float width=1.0) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:65: warning: Member setAxisLogScale(Axis a, bool logScale) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/qvtkwidget.h:19: warning: Member QVTKWidget(QWidget *parent=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::VTK::QVTKWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkglwidget.h:43: warning: Member vtkGLWidget(QWidget *p=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::VTK::vtkGLWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/qvtkwidget.h:19: warning: Member QVTKWidget(QWidget *parent=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::VTK::QVTKWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h:96: warning: argument 'array' of command @param is not found in the argument list of ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h:96: warning: The following parameter of Avogadro::Calc::ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const is not documented: parameter 'points' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h:126: warning: Unsupported xml/html tag found /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h:51: warning: argument 'custom' of command @param is not found in the argument list of ColorButton::setDialogTitle(const QString title="") /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h:51: warning: The following parameter of Avogadro::QtGui::ColorButton::setDialogTitle(const QString title="") is not documented: parameter 'title' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:98: warning: Found unknown command '\index' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:50: warning: The following parameter of Avogadro::Core::CrystalTools::rotateToStandardOrientation(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:65: warning: The following parameters of Avogadro::Core::CrystalTools::setVolume(Molecule &molecule, Real newVolume, Options opts=None) are not documented: parameter 'molecule' parameter 'newVolume' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:75: warning: The following parameter of Avogadro::Core::CrystalTools::niggliReduce(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:97: warning: The following parameter of Avogadro::Core::CrystalTools::buildSupercell(Molecule &molecule, unsigned int a, unsigned int b, unsigned int c) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:109: warning: The following parameters of Avogadro::Core::CrystalTools::setCellMatrix(Molecule &molecule, const Matrix3 &newCellColMatrix, Options opt=None) are not documented: parameter 'molecule' parameter 'newCellColMatrix' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:194: warning: The following parameter of Avogadro::Core::Cube::setValue(unsigned int i, float value) is not documented: parameter 'value' es... Generating docs for compound TextRenderStrategy... Generating docs for compound Texture2D... Generating docs for compound TransformNode... Generating docs for compound Visitor... Generating docs for compound VolumeGeometry... Generating docs for compound VRMLVisitor... Generating docs for compound ChartDialog... Generating docs for compound ChartWidget... Generating docs for compound QVTKWidget... Generating docs for compound vtkGLWidget... Generating graph info page... Generating directory documentation... Generating index page... Generating main page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class Avogadro::QtOpenGL::ActiveObjects Generating XML output for class Avogadro::Rendering::AmbientOcclusionSphereGeometry Generating XML output for class Avogadro::Core::AngleIterator Generating XML output for class Avogadro::Rendering::ArcSector Generating XML output for class Avogadro::Rendering::ArcStrip Generating XML output for class Avogadro::Core::Array Generating XML output for class Avogadro::QtGui::Array Generating XML output for class Avogadro::Core::internal::ArrayRefContainer Generating XML output for class Avogadro::Core::ArraySet Generating XML output for class Avogadro::Rendering::ArrowGeometry Generating XML output for class Avogadro::Core::Atom Generating XML output for class Avogadro::Core::AtomTemplate Generating XML output for class Avogadro::Core::AtomTyper Generating XML output for class Avogadro::Core::AtomUtilities Generating XML output for class Avogadro::Core::AvoSpglib Generating XML output for class Avogadro::QtGui::BackgroundFileFormat Generating XML output for class Avogadro::Core::BasisSet Generating XML output for class Avogadro::MoleQueue::BatchJob Generating XML output for class Avogadro::Rendering::BezierGeometry Generating XML output for class Avogadro::Core::Bond Generating XML output for class Avogadro::Core::BondTemplate Generating XML output for class Avogadro::Rendering::BSplineGeometry Generating XML output for class Avogadro::Rendering::BufferObject Generating XML output for class Avogadro::Rendering::Camera Generating XML output for class Avogadro::Rendering::Cartoon Generating XML output for class Avogadro::Io::CaseInsensitiveComparator Generating XML output for class Avogadro::Calc::ChargeManager Generating XML output for class Avogadro::Calc::ChargeModel Generating XML output for class Avogadro::VTK::ChartDialog Generating XML output for class Avogadro::VTK::ChartWidget Generating XML output for class Avogadro::Io::CjsonFormat Generating XML output for class Avogadro::MoleQueue::Client Generating XML output for class Avogadro::Io::CmlFormat Generating XML output for class Avogadro::Io::CMsgPackFormat Generating XML output for class Avogadro::Core::Color3f Generating XML output for class Avogadro::QtGui::ColorButton Generating XML output for class Avogadro::Rendering::ColorNormalVertex Generating XML output for class Avogadro::Rendering::ColorTextureVertex Generating XML output for class Avogadro::QtGui::ContainerWidget Generating XML output for class Avogadro::Core::CoordinateBlockGenerator Generating XML output for class Avogadro::Core::CoordinateSet Generating XML output for class Avogadro::Core::CrystalTools Generating XML output for class Avogadro::Core::Cube Generating XML output for class Avogadro::Rendering::CurveGeometry Generating XML output for class Avogadro::QtGui::CustomElementDialog Generating XML output for class Avogadro::Rendering::Cylinder Generating XML output for class Avogadro::Rendering::CylinderColor Generating XML output for class Avogadro::Rendering::CylinderGeomet/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/fileformatdialog.h:144: warning: The following parameter of Avogadro::QtGui::FileFormatDialog::selectFileFormat(QWidget *parentWidget, const std::vector< const Io::FileFormat * > &ffs, const QString &caption, const QString &prompt, const QString &settingsKey=QString(), const QString &formatPrefix=QString()) is not documented: parameter 'formatPrefix' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h:319: warning: argument 'fmap' of command @param is not found in the argument list of FileFormatManager::filteredFormatFromFormatVector(FileFormat::Operations filter, const FormatIdVector &fvec) const /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h:319: warning: The following parameter of Avogadro::Io::FileFormatManager::filteredFormatFromFormatVector(FileFormat::Operations filter, const FormatIdVector &fvec) const is not documented: parameter 'fvec' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:54: warning: The following parameter of Avogadro::Rendering::GroupNode::addChild(Node *node, NodeType ui=NodeType::GEOMETRY) is not documented: parameter 'ui' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:299: warning: Found unknown command '@data' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/hydrogentools.h:77: warning: The following parameters of Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const RWAtom &atom, int numberOfHydrogens, std::vector< Vector3 > &positions) are not documented: parameter 'atom' parameter 'numberOfHydrogens' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgenerator.h:454: warning: The following parameter of Avogadro::MoleQueue::InputGenerator::InputGenerator(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/interfacescript.h:452: warning: The following parameter of Avogadro::QtGui::InterfaceScript::InterfaceScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of LineStripGeometry::addLineStrip(const Core::Array< Vector3f > &vertices, float lineWidth) ry Generating XML output for class Avogadro::Rendering::DashedLineGeometry Generating XML output for class Avogadro::Io::DcdFormat Generating XML output for class Avogadro::Calc::DefaultModel Generating XML output for class Avogadro::Core::DihedralIterator Generating XML output for class Avogadro::Rendering::Drawable Generating XML output for class Avogadro::Rendering::EigenData Generating XML output for class Avogadro::QtGui::ElementDetail Generating XML output for class Avogadro::QtGui::ElementItem Generating XML output for class Avogadro::Core::Elements Generating XML output for class Avogadro::QtGui::ElementTranslator Generating XML output for class Avogadro::Calc::EnergyCalculator Generating XML output for class Avogadro::Calc::EnergyManager Generating XML output for class Avogadro::QtGui::ExtensionPlugin Generating XML output for class Avogadro::QtGui::ExtensionPluginFactory Generating XML output for class Avogadro::QtGui::FileBrowseWidget Generating XML output for class Avogadro::Io::FileFormat Generating XML output for class Avogadro::QtGui::FileFormatDialog Generating XML output for class Avogadro::Io::FileFormatManager Generating XML output for class Avogadro::Frustrum Generating XML output for class Avogadro::QuantumIO::GamessukOut Generating XML output for class Avogadro::QuantumIO::GAMESSUSOutput Generating XML output for class Avogadro::QuantumIO::GaussianCube Generating XML output for class Avogadro::QuantumIO::GaussianFchk Generating XML output for class Avogadro::Core::GaussianSet Generating XML output for class Avogadro::Core::GaussianSetTools Generating XML output for class Avogadro::QtGui::GenericHighlighter Generating XML output for class Avogadro::QuantumIO::GenericOutput Generating XML output for class Avogadro::Rendering::GeometryNode Generating XML output for class Avogadro::Rendering::GeometryVisitor Generating XML output for class Avogadro::Rendering::GLRenderer Generating XML output for class Avogadro::Rendering::GLRenderVisitor Generating XML output for class Avogadro::QtOpenGL::GLWidget Generating XML output for class Avogadro::Core::Graph Generating XML output for class Avogadro::Io::GromacsFormat Generating XML output for class Avogadro::Rendering::GroupNode Generating XML output for class Avogadro::QuantumIO::GUKBasisSet Generating XML output for class Avogadro::Core::hBondRecord Generating XML output for class Avogadro::Io::Hdf5DataFormat Generating XML output for class Avogadro::Core::ArraySet::Holder Generating XML output for class Avogadro::QtGui::HydrogenTools Generating XML output for class Avogadro::Rendering::Identifier Generating XML output for class Avogadro::Rendering::Primitive::Identifier Generating XML output for class Avogadro::MoleQueue::InputGenerator Generating XML output for class Avogadro::MoleQueue::InputGeneratorDialog Generating XML output for class Avogadro::MoleQueue::InputGeneratorWidget Generating XML output for class Avogadro::QtGui::InsertFragmentDialog Generating XML output for class Avogadro::QtGui::InterfaceScript Generating XML output for class Avogadro::QtGui::InterfaceWidget Generating XML output for class Avogadro::MoleQueue::JobObject Generating XML output for class Avogadro::MoleQueue::JsonRpcClient Generating XML output for class Avogadro::QtGui::JsonWidget Generating XML output for class Avogadro::Io::LammpsDataFormat Generating XML output for class Avogadro::Io::LammpsTrajectoryFormat Generating XML output for class Avogadro::Core::Layer Generating XML output for class Avogadro::Core::LayerData Generating XML output for class Avogadro::Core::LayerManager Generating XML output for class Avogadro::QtGui::LayerModel Generating XML output for class Avogadro::Calc::LennardJones Generating XML output for class Avogadro::Rendering::Line Generating XML output for class Avogadro::Rendering::LineStripGeometry Generating XML output for class Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare Generating XML output for class Avogadro::Io::MdlFormat Generating XML output for class Avogadro::Core::Mesh Generating XML output for class Avogadro::QtGui::MeshG/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:52: warning: The following parameters of Avogadro::QtGui::MeshGenerator::MeshGenerator(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false, QObject *parent=nullptr) are not documented: parameter 'reverse' parameter 'parent' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:68: warning: The following parameter of Avogadro::QtGui::MeshGenerator::initialize(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false) is not documented: parameter 'reverse' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:125: warning: The following parameter of Avogadro::QtGui::MeshGenerator::offset(float val1, float val2) is not documented: parameter 'val2' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:67: warning: argument 'colors' of command @param is not found in the argument list of MeshGeometry::addVertices(const Core::Array< Vector3f > &vertices, const Core::Array< Vector3f > &normals) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:173: warning: argument 'a' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:173: warning: argument 'b' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:173: warning: The following parameters of Avogadro::QtGui::Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) are not documented: parameter 'atomId1' parameter 'atomId2' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:31: warning: argument 'scriptFilePath_' of command @param is not found in the argument list of PythonScript::PythonScript(QObject *parent_=nullptr) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:628: warning: The following parameter of Avogadro::QtGui::RWMolecule::setForceVector(Index atomId, const Vector3 &pos, const QString &undoText=QStringLiteral("Change Force Vectors")) is not documented: parameter 'atomId' enerator Generating XML output for class Avogadro::Rendering::MeshGeometry Generating XML output for class Avogadro::Io::MMTFFormat Generating XML output for class Avogadro::QuantumIO::MoldenFile Generating XML output for class Avogadro::Core::Molecule Generating XML output for class Avogadro::QtGui::Molecule Generating XML output for class Avogadro::Core::MoleculeInfo Generating XML output for class Avogadro::QtGui::MoleculeModel Generating XML output for class Avogadro::QtGui::MoleculeSystem Generating XML output for class Avogadro::MoleQueue::MoleQueueDialog Generating XML output for class Avogadro::MoleQueue::MoleQueueManager Generating XML output for class Avogadro::MoleQueue::MoleQueueQueueListModel Generating XML output for class Avogadro::MoleQueue::MoleQueueWidget Generating XML output for class Avogadro::QuantumIO::MopacAux Generating XML output for class Avogadro::QtGui::MultiViewWidget Generating XML output for class Avogadro::Core::Mutex Generating XML output for class Avogadro::Core::NameAtomTyper Generating XML output for class Avogadro::Core::NeighborPerceiver Generating XML output for class Avogadro::Rendering::Node Generating XML output for class Avogadro::Rendering::GroupNode::NodeInfo Generating XML output for class Avogadro::QuantumIO::NWChemJson Generating XML output for class Avogadro::QuantumIO::NWChemLog Generating XML output for class Avogadro::QuantumIO::ORCAOutput Generating XML output for class Avogadro::Io::OutcarFormat Generating XML output for class Avogadro::Rendering::DashedLineGeometry::PackedVertex Generating XML output for class Avogadro::Rendering::LineStripGeometry::PackedVertex Generating XML output for class Avogadro::Rendering::MeshGeometry::PackedVertex Generating XML output for class Avogadro::Io::PdbFormat Generating XML output for class Avogadro::QtGui::PeriodicTableScene Generating XML output for class Avogadro::QtGui::PeriodicTableView Generating XML output for class Avogadro::QtGui::PersistentAtom Generating XML output for class Avogadro::QtGui::PersistentBond Generating XML output for class Avogadro::Core::ArraySet::PlaceHolder Generating XML output for class Avogadro::QtGui::PluginLayerManager Generating XML output for class Avogadro::Rendering::PLYVisitor Generating XML output for class Avogadro::Rendering::Point Generating XML output for class Avogadro::Io::PoscarFormat Generating XML output for class Avogadro::Rendering::POVRayVisitor Generating XML output for class Avogadro::Rendering::Primitive Generating XML output for class Avogadro::QtGui::PythonScript Generating XML output for class Avogadro::QtOpenGL::QtTextRenderStrategy Generating XML output for class Avogadro::Rendering::Quad Generating XML output for class Avogadro::Rendering::QuadOutline Generating XML output for class Avogadro::VTK::QVTKWidget Generating XML output for class Avogadro::MoleQueue::BatchJob::Request Generating XML output for class Avogadro::Core::Residue Generating XML output for class Avogadro::Core::ResidueData Generating XML output for class Avogadro::Core::RingPerceiver Generating XML output for class Avogadro::QtGui::GenericHighlighter::Rule Generating XML output for class Avogadro::QtGui::RWAtom Generating XML output for class Avogadro::QtGui::RWBond Generating XML output for class Avogadro::QtGui::RWLayerManager Generating XML output for class Avogadro::QtGui::RWMolecule Generating XML output for class Avogadro::Rendering::Scene Generating XML output for class Avogadro::QtGui::ScenePlugin Generating XML output for class Avogadro::QtGui::ScenePluginFactory Generating XML output for class Avogadro::QtGui::ScenePluginModel Generating XML output for class Avogadro::QtGui::ScriptLoader Generating XML output for class Avogadro::Core::SecondaryStructureAssigner Generating XML output for class Avogadro::Rendering::Shader Generating XML output for class Avogadro::Rendering::ShaderInfo Generating XML output for class Avogadro::Rendering::ShaderProgram Generating XML output for class Avogadro::Core::SharedMutex Generating XML output for class Avogadro::Core::SlaterSet Generating XML output for class Avogadro::Core::SlaterSetTools Generating XML output for class Avogadro::Rendering::SolidPipeline Generating XML output for class Avogadro::QtGui::SortFilterTreeProxyModel Generating XML output for class Avogadro::Core::SpaceGroups Generating XML output for class Avogadro::Rendering::Sphere Generating XML output for class Avogadro::Rendering::SphereColor Generating XML output for class Avogadro::Rendering::SphereGeometry Generating XML output for class Avogadro::Core::SymbolAtomTyper Generating XML output for class Avogadro::Rendering::TextLabel2D Generating XML output for class Avogadro::Rendering::TextLabel3D Generating XML output for class Avogadro::Rendering::TextLabelBase Generating XML output for class Avogadro::Rendering::TextProperties Generating XML output for class Avogadro::Rendering::TextRenderStrategy Generating XML output for class Avogadro::Rendering::Texture2D Generating XML output for class Avogadro::QtGui::ToolPlugin Generating XML output for class Avogadro::QtGui::ToolPluginFactory Generating XML output for class Avogadro::Rendering::TransformNode Generating XML output for class Avogadro::Io::TrrFormat Generating XML output for class Avogadro::Io::TurbomoleFormat Generating XML output for class Avogadro::TypeTraits Generating XML output for class Avogadro::TypeTraits< char > Generating XML output for class Avogadro::TypeTraits< double > Generating XML output for class Avogadro::TypeTraits< float > Generating XML output for class Avogadro::TypeTraits< int > Generating XML output for class Avogadro::TypeTraits< short > Generating XML output for class Avogadro::TypeTraits< unsigned char > Generating XML output for class Avogadro::TypeTraits< unsigned int > Generating XML output for class Avogadro::TypeTraits< unsigned short > Generating XML output for class Avogadro::QtGui::RWMolecule::UndoCommand Generating XML output for class Avogadro::Core::UnitCell Generating XML output for class Avogadro::QtGui::UnitCell Generating XML output for class Avogadro::Core::Variant Generating XML output for class Avogadro::Core::VariantMap Generating XML output for class Avogadro::QtGui::ViewFactory Generating XML output for class Avogadro::Rendering::Visitor Generating XML output for class Avogadro::Rendering::VolumeGeometry Generating XML output for class Avogadro::Rendering::VRMLVisitor Generating XML output for class vtkAvogadroActor Generating XML output for class Avogadro::VTK::vtkGLWidget Generating XML output for class Avogadro::Io::XyzFormat Generating XML output for namespace Avogadro Generating XML output for namespace Avogadro::Calc Generating XML output for namespace Avogadro::Core Generating XML output for namespace Avogadro::Core::internal Generating XML output for namespace Avogadro::Io Generating XML output for namespace Avogadro::MoleQueue Generating XML output for namespace Avogadro::MoleQueue::Ui Generating XML output for namespace Avogadro::QtGui Generating XML output for namespace Avogadro::QtGui Generating XML output for namespace Avogadro::QtGui::Ui Generating XML output for namespace Avogadro::QtGui::Utilities Generating XML output for namespace Avogadro::QtOpenGL Generating XML output for namespace Avogadro::QtPlugins Generating XML output for namespace Avogadro::QuantumIO Generating XML output for namespace Avogadro::Rendering Generating XML output for namespace Avogadro::VTK Generating XML output for namespace cppoptlib Generating XML output for namespace QtPlugins Generating XML output for namespace std Generating XML output for file chargemanager.h Generating XML output for file chargemodel.h Generating XML output for file defaultmodel.h Generating XML output for file energycalculator.h Generating XML output for file energymanager.h Generating XML output for file lennardjones.h Generating XML output for file lennardjonesdata.h Generating XML output for file angleiterator.h Generating XML output for file angletools.h Generating XML output for file array.h Generating XML output for file atom.h Generating XML output for file atomtyper-inline.h Generating XML output for file atomtyper.h Generating XML output for file atomutilities.h Generating XML output for file avogadrocore.h Generating XML output for file avospglib.h Generating XML output for file basisset.h Generating XML output for file bond.h Generating XML output for file color3f.h Generating XML output for file coordinateblockgenerator.h Generating XML output for file coordinateset.h Generating XML output for file crystaltools.h Generating XML output for file cube.h Generating XML output for file dihedraliterator.h Generating XML output for file elementdata.h Generating XML output for file elements.h Generating XML output for file gaussianset.h Generating XML output for file gaussiansettools.h Generating XML output for file graph.h Generating XML output for file layer.h Generating XML output for file layermanager.h Generating XML output for file matrix.h Generating XML output for file mdlvalence_p.h Generating XML output for file mesh.h Generating XML output for file core/molecule.h Generating XML output for file qtgui/molecule.h Generating XML output for file mutex.h Generating XML output for file nameatomtyper.h Generating XML output for file neighborperceiver.h Generating XML output for file residue.h Generating XML output for file residuecolors.h Generating XML output for file residuedata.h Generating XML output for file ringperceiver.h Generating XML output for file secondarystructure.h Generating XML output for file sharedmutex.h Generating XML output for file slaterset.h Generating XML output for file slatersettools.h Generating XML output for file spacegroupdata.h Generating XML output for file spacegroups.h Generating XML output for file symbolatomtyper.h Generating XML output for file types.h Generating XML output for file unitcell.h Generating XML output for file core/utilities.h Generating XML output for file qtgui/utilities.h Generating XML output for file variant-inline.h Generating XML output for file variant.h Generating XML output for file variantmap.h Generating XML output for file vector.h Generating XML output for file cjsonformat.h Generating XML output for file cmlformat.h Generating XML output for file cmsgpackformat.h Generating XML output for file dcdformat.h Generating XML output for file fileformat.h Generating XML output for file fileformatmanager.h Generating XML output for file gromacsformat.h Generating XML output for file hdf5dataformat.h Generating XML output for file lammpsformat.h Generating XML output for file mdlformat.h Generating XML output for file mmtfformat.h Generating XML output for file pdbformat.h Generating XML output for file trrformat.h Generating XML output for file turbomoleformat.h Generating XML output for file vaspformat.h Generating XML output for file xyzformat.h Generating XML output for file batchjob.h Generating XML output for file client.h Generating XML output for file jobobject.h Generating XML output for file jsonrpcclient.h Generating XML output for file inputgenerator.h Generating XML output for file inputgeneratordialog.h Generating XML output for file inputgeneratorwidget.h Generating XML output for file molequeuedialog.h Generating XML output for file molequeuemanager.h Generating XML output for file molequeuequeuelistmodel.h Generating XML output for file molequeuewidget.h Generating XML output for file backgroundfileformat.h Generating XML output for file colorbutton.h Generating XML output for file containerwidget.h Generating XML output for file customelementdialog.h Generating XML output for file elementdetail_p.h Generating XML output for file elementitem_p.h Generating XML output for file elementtranslator.h Generating XML output for file extensionplugin.h Generating XML output for file filebrowsewidget.h Generating XML output for file fileformatdialog.h Generating XML output for file generichighlighter.h Generating XML output for file hydrogentools.h Generating XML output for file insertfragmentdialog.h Generating XML output for file interfacescript.h Generating XML output for file interfacewidget.h Generating XML output for file jsonwidget.h Generating XML output for file layermodel.h Generating XML output for file meshgenerator.h Generating XML output for file moleculemodel.h Generating XML output for file multiviewwidget.h Generating XML output for file periodictablescene_p.h Generating XML output for file periodictableview.h Generating XML output for file persistentatom.h Generating XML output for file persistentbond.h Generating XML output for file pluginlayermanager.h Generating XML output for file pythonscript.h Generating XML output for file rwlayermanager.h Generating XML output for file rwmolecule.h Generating XML output for file rwmolecule_undo.h Generating XML output for file sceneplugin.h Generating XML output for file scenepluginmodel.h Generating XML output for file scriptloader.h Generating XML output for file sortfiltertreeproxymodel.h Generating XML output for file toolplugin.h Generating XML output for file viewfactory.h Generating XML output for file activeobjects.h Generating XML output for file glwidget.h Generating XML output for file qttextrenderstrategy.h Generating XML output for file gamessukout.h Generating XML output for file gamessus.h Generating XML output for file gaussiancube.h Generating XML output for file gaussianfchk.h Generating XML output for file genericoutput.h Generating XML output for file molden.h Generating XML output for file mopacaux.h Generating XML output for file nwchemjson.h Generating XML output for file nwchemlog.h Generating XML output for file orca.h Generating XML output for file ambientocclusionspheregeometry.h Generating XML output for file arcsector.h Generating XML output for file arcstrip.h Generating XML output for file arrowgeometry.h Generating XML output for file avogadrogl.h Generating XML output for file avogadrorendering.h Generating XML output for file beziergeometry.h Generating XML output for file bsplinegeometry.h Generating XML output for file bufferobject.h Generating XML output for file camera.h Generating XML output for file cartoongeometry.h Generating XML output for file curvegeometry.h Generating XML output for file cylindergeometry.h Generating XML output for file dashedlinegeometry.h Generating XML output for file drawable.h Generating XML output for file geometrynode.h Generating XML output for file geometryvisitor.h Generating XML output for file glrenderer.h Generating XML output for file glrendervisitor.h Generating XML output for file groupnode.h Generating XML output for file linestripgeometry.h Generating XML output for file meshgeometry.h Generating XML output for file node.h Generating XML output for file plyvisitor.h Generating XML output for file povrayvisitor.h Generating XML output for file primitive.h Generating XML output for file quad.h Generating XML output for file quadoutline.h Generating XML output for file scene.h Generating XML output for file shader.h Generating XML output for file shaderprogram.h Generating XML output for file solidpipeline.h Generating XML output for file spheregeometry.h Generating XML output for file textlabel2d.h Generating XML output for file textlabel3d.h Generating XML output for file textlabelbase.h Generating XML output for file textproperties.h Generating XML output for file textrenderstrategy.h Generating XML output for file texture2d.h Generating XML output for file transformnode.h Generating XML output for file visitor.h Generating XML output for file volumegeometry.h Generating XML output for file vrmlvisitor.h Generating XML output for file chartdialog.h Generating XML output for file chartwidget.h Generating XML output for file qvtkwidget.h Generating XML output for file vtkAvogadroActor.h Generating XML output for file vtkglwidget.h Generating XML output for file mainpage.dox Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/docs/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/ Generating XML output for the main page Running plantuml with JAVA... type lookup cache used 4047/65536 hits=22646 misses=5694 symbol lookup cache used 10129/65536 hits=74404 misses=10129 finished... gmake[3]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' Built target documentation gmake[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles 0 gmake[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.MBJGYe + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + '[' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/avogadro2-libs-1.99.0-build + mkdir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd avogadrolibs-1.99.0 + DESTDIR=/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/libgwavi.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/angletools.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/angleiterator.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/array.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/avogadrocore.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/color3f.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/coordinateset.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/matrix.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/types.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/utilities.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/vector.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/libAvogadroCore.so.1.99.0 -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/libAvogadroCore.so.1 -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/libAvogadroCore.so -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/atom.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/atomtyper.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/atomtyper-inline.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/atomutilities.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/basisset.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/bond.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/coordinateblockgenerator.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/crystaltools.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/cube.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/dihedraliterator.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/elements.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/gaussianset.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/gaussiansettools.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/graph.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/layer.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/layermanager.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/mesh.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/molecule.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/mutex.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/nameatomtyper.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/neighborperceiver.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/residue.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/ringperceiver.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/secondarystructure.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/slaterset.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/slatersettools.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/spacegroups.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/symbolatomtyper.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/unitcell.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/variant.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/variant-inline.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/variantmap.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/version.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/sharedmutex.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/avospglib.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/avogadrocoreexport.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/libAvogadroCalc.so.1.99.0 -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/libAvogadroCalc.so.1 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/libAvogadroCalc.so.1.99.0" to "" -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/libAvogadroCalc.so -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/calc/chargemodel.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/calc/chargemanager.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/calc/defaultmodel.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/calc/energycalculator.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/calc/energymanager.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/calc/lennardjones.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/calc/avogadrocalcexport.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/libAvogadroIO.so.1.99.0 -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/libAvogadroIO.so.1 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/libAvogadroIO.so.1.99.0" to "" -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/libAvogadroIO.so -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/io/cjsonformat.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/io/cmlformat.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/io/cmsgpackformat.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/io/dcdformat.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/io/fileformat.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/io/fileformatmanager.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/io/gromacsformat.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/io/mdlformat.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/io/vaspformat.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/io/pdbformat.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/io/xyzformat.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/io/trrformat.h -- Installing: 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Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/libAvogadroQuantumIO.so -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/quantumio/gamessus.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/quantumio/gaussianfchk.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/quantumio/gaussiancube.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/quantumio/genericoutput.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/quantumio/molden.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/quantumio/mopacaux.h -- Installing: 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Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/arcsector.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/arcstrip.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/arrowgeometry.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/avogadrogl.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/avogadrorendering.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/beziergeometry.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/bsplinegeometry.h -- Installing: 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/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/cmake/avogadrolibs/Findlibmsym.cmake -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/cmake/avogadrolibs/AvogadroLibsTargets.cmake -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/cmake/avogadrolibs/AvogadroLibsTargets-release.cmake + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts recursedown('/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts') recursedown('/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts/charges') recursedown('/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts/energy') recursedown('/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts/formatScripts') recursedown('/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts/inputGenerators') /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts/charges/antechamber.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts/charges/xtb.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts/energy/ani2x.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts/energy/gfn1.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts/energy/gfn2.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts/energy/gfnff.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts/formatScripts/zyx.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts/inputGenerators/dalton.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts/inputGenerators/gamessuk.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts/inputGenerators/gaussian.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts/inputGenerators/molpro.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts/inputGenerators/mopac.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts/inputGenerators/nwchem.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts/inputGenerators/orca.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts/inputGenerators/psi4.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts/inputGenerators/pyscf.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts/inputGenerators/qchem.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/scripts/inputGenerators/terachem.py: no change + rm -rf /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc + mkdir -p /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs + cp -a redhat-linux-build/docs/html /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs/html + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 1.99.0-5.fc43 --unique-debug-suffix -1.99.0-5.fc43.i386 --unique-debug-src-base avogadro2-libs-1.99.0-5.fc43.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 find-debuginfo: starting Extracting debug info from 9 files DWARF-compressing 9 files sepdebugcrcfix: Updated 9 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/avogadro2-libs-1.99.0-5.fc43.i386 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/lib/avogadro2/scripts/energy/ani2x.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/avogadro2/scripts/energy/gfn1.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/avogadro2/scripts/energy/gfn2.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/avogadro2/scripts/energy/gfnff.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/avogadro2/scripts/inputGenerators/dalton.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/avogadro2/scripts/inputGenerators/gamessuk.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/avogadro2/scripts/inputGenerators/gaussian.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/avogadro2/scripts/inputGenerators/molpro.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/avogadro2/scripts/inputGenerators/mopac.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/avogadro2/scripts/inputGenerators/nwchem.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/avogadro2/scripts/inputGenerators/orca.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/avogadro2/scripts/inputGenerators/psi4.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/avogadro2/scripts/inputGenerators/pyscf.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/avogadro2/scripts/inputGenerators/qchem.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/avogadro2/scripts/inputGenerators/terachem.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/avogadro2/scripts/charges/xtb.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/avogadro2/scripts/charges/antechamber.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/avogadro2/scripts/formatScripts/zyx.py is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/libgwavi.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/ThreeDMol.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/AlignTool.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/BondCentric.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/Bonding.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/ApplyColors.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/Centroid.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/Cartoons.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/CopyPaste.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/ConfigurePython.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/CrystalScene.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/CustomElements.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/Crystal.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/FetchPDB.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/Focus.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/Editor.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/Hydrogens.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/Label.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/NucleicInput.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/LabelEditor.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/ImportPQR.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/LineFormatInput.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/Manipulator.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/MeasureTool.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/LammpsInput.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/Navigator.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/NetworkDatabases.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/PlayerTool.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/PLY.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/OpenMMInput.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/POVRay.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/PropertyTables.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/ResetView.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/Select.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/OpenBabel.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/SpaceGroup.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/Selection.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/Vibrations.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/VRML.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/Surfaces.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/apbs.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/CoordinateEditor.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/Cp2kInput.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/GamessInput.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/InsertFragment.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/Forcefield.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/TemplateTool.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/MolecularProperties.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/SVG.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/commands.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/QuantumInput.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/ScriptCharges.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/ScriptFileFormats.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/CloseContacts.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/BallStick.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/Force.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/Licorice.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/Meshes.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/PluginDownloader.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/VanDerWaals.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/NonCovalent.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/OverlayAxes.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/Wireframe.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/QTAIMScenePlugin.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib/avogadro2/staticplugins/QTAIMExtension.a: replacing with normalized version Scanned 504 directories and 4797 files, processed 568 inodes, 65 modified (65 replaced + 0 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/avogadro2-libs-1.99.0-build/SPECPARTS/rpm-debuginfo.specpart Processing files: avogadro2-libs-1.99.0-5.fc43.i686 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.1M65Gs + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + cd avogadrolibs-1.99.0 + DOCDIR=/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/README.md /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi/README-libgwavi.md /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/README-avogenerators.md /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/fragments/README-fragments.md /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.4mwsqv + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + cd avogadrolibs-1.99.0 + LICENSEDIR=/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/LICENSE /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/molecules/LICENSE-molecules /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/fragments/LICENSE-fragments /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs + RPM_EC=0 ++ jobs -p + exit 0 Provides: avogadro2-libs = 1.99.0-5.fc43 avogadro2-libs(x86-32) = 1.99.0-5.fc43 avogadro2-libs-static = 0:1.99.0-5.fc43 libAvogadroCalc.so.1 libAvogadroCore.so.1 libAvogadroIO.so.1 libAvogadroMoleQueue.so.1 libAvogadroQtGui.so.1 libAvogadroQtOpenGL.so.1 libAvogadroQtPlugins.so.1 libAvogadroQuantumIO.so.1 libAvogadroRendering.so.1 python-avogadro2-libs = 1.99.0-5.fc43 python3.13-avogadro2-libs = 1.99.0-5.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux.so.2 ld-linux.so.2(GLIBC_2.3) libAvogadroCalc.so.1 libAvogadroCore.so.1 libAvogadroIO.so.1 libAvogadroMoleQueue.so.1 libAvogadroQtGui.so.1 libAvogadroQtOpenGL.so.1 libAvogadroQuantumIO.so.1 libAvogadroRendering.so.1 libGLEW.so.2.2 libGLX.so.0 libOpenGL.so.0 libQt5Concurrent.so.5 libQt5Concurrent.so.5(Qt_5) libQt5Core.so.5 libQt5Core.so.5(Qt_5) libQt5Core.so.5(Qt_5.15) libQt5Gui.so.5 libQt5Gui.so.5(Qt_5) libQt5Network.so.5 libQt5Network.so.5(Qt_5) libQt5Svg.so.5 libQt5Svg.so.5(Qt_5) libQt5Widgets.so.5 libQt5Widgets.so.5(Qt_5) libarchive.so.13 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.2) libc.so.6(GLIBC_2.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.32) libc.so.6(GLIBC_2.34) libc.so.6(GLIBC_2.38) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_ABI_DT_RELR) libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgcc_s.so.1(GCC_3.3.1) libhdf5.so.310 libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libm.so.6(GLIBC_2.27) libm.so.6(GLIBC_2.29) libopenbabel.so.7 libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.15) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.14) libstdc++.so.6(GLIBCXX_3.4.15) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.26) libstdc++.so.6(GLIBCXX_3.4.30) libstdc++.so.6(GLIBCXX_3.4.32) libstdc++.so.6(GLIBCXX_3.4.9) libsymspg.so.2 rtld(GNU_HASH) Obsoletes: python-avogadro2-libs < 1.99.0-5.fc43 Processing files: avogadro2-libs-devel-1.99.0-5.fc43.i686 Provides: avogadro2-libs-devel = 1.99.0-5.fc43 avogadro2-libs-devel(x86-32) = 1.99.0-5.fc43 cmake(AvogadroLibs) = 1.99.0 cmake(avogadrolibs) = 1.99.0 libgwavi-static Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: cmake-filesystem(x86-32) libAvogadroCalc.so.1 libAvogadroCore.so.1 libAvogadroIO.so.1 libAvogadroMoleQueue.so.1 libAvogadroQtGui.so.1 libAvogadroQtOpenGL.so.1 libAvogadroQtPlugins.so.1 libAvogadroQuantumIO.so.1 libAvogadroRendering.so.1 Processing files: avogadro2-libs-doc-1.99.0-5.fc43.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.IwAsw2 + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + cd avogadrolibs-1.99.0 + DOCDIR=/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs-doc + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/README.md /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.bxNXLH + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + cd avogadrolibs-1.99.0 + LICENSEDIR=/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs-doc + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/LICENSE /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: avogadro2-libs-doc = 1.99.0-5.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: avogadro2-libs-debugsource-1.99.0-5.fc43.i686 Provides: avogadro2-libs-debugsource = 1.99.0-5.fc43 avogadro2-libs-debugsource(x86-32) = 1.99.0-5.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: avogadro2-libs-debuginfo-1.99.0-5.fc43.i686 Provides: avogadro2-libs-debuginfo = 1.99.0-5.fc43 avogadro2-libs-debuginfo(x86-32) = 1.99.0-5.fc43 debuginfo(build-id) = 03240e4c0e85a154f621f08e8be88978b7783001 debuginfo(build-id) = 10a44da03f1c8dfa5bafb4550271d7c0ab415d30 debuginfo(build-id) = 118741b1c76f9e4b95e07b30eeebdaf0937a8894 debuginfo(build-id) = 1bdc9a7041c6b7848ab83e1c4d1e7fddfb9f7554 debuginfo(build-id) = 2f33e42a7139abe496bc2dcf5ced35a8805985a4 debuginfo(build-id) = 487b57c10ac12effb8994719a0c316b48cf91bac debuginfo(build-id) = 5c568ebf166d8cc6b3fe57c71e3a0336adb4519a debuginfo(build-id) = 91c968b7d4ef1ab1225051225eb03954baf32335 debuginfo(build-id) = fa41405ba35efee64864e7914a3159372dcfd9a3 libAvogadroCalc.so.1.99.0-1.99.0-5.fc43.i386.debug libAvogadroCore.so.1.99.0-1.99.0-5.fc43.i386.debug libAvogadroIO.so.1.99.0-1.99.0-5.fc43.i386.debug libAvogadroMoleQueue.so.1.99.0-1.99.0-5.fc43.i386.debug libAvogadroQtGui.so.1.99.0-1.99.0-5.fc43.i386.debug libAvogadroQtOpenGL.so.1.99.0-1.99.0-5.fc43.i386.debug libAvogadroQtPlugins.so.1.99.0-1.99.0-5.fc43.i386.debug libAvogadroQuantumIO.so.1.99.0-1.99.0-5.fc43.i386.debug libAvogadroRendering.so.1.99.0-1.99.0-5.fc43.i386.debug Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: avogadro2-libs-debugsource(x86-32) = 1.99.0-5.fc43 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT Wrote: /builddir/build/RPMS/avogadro2-libs-doc-1.99.0-5.fc43.noarch.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-devel-1.99.0-5.fc43.i686.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-debugsource-1.99.0-5.fc43.i686.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-1.99.0-5.fc43.i686.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-debuginfo-1.99.0-5.fc43.i686.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.4hSDwE + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + test -d /builddir/build/BUILD/avogadro2-libs-1.99.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/avogadro2-libs-1.99.0-build + rm -rf /builddir/build/BUILD/avogadro2-libs-1.99.0-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild avogadro2-libs-1.99.0-5.fc43.src.rpm Finish: build phase for avogadro2-libs-1.99.0-5.fc43.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-i686-1746264360.351363/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/avogadro2-libs-1.99.0-5.fc43.src.rpm) Config(child) 10 minutes 58 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "avogadro2-libs-debuginfo", "epoch": null, "version": "1.99.0", "release": "5.fc43", "arch": "i686" }, { "name": "avogadro2-libs", "epoch": null, "version": "1.99.0", "release": "5.fc43", "arch": "i686" }, { "name": "avogadro2-libs-devel", "epoch": null, "version": "1.99.0", "release": "5.fc43", "arch": "i686" }, { "name": "avogadro2-libs-debugsource", "epoch": null, "version": "1.99.0", "release": "5.fc43", "arch": "i686" }, { "name": "avogadro2-libs-doc", "epoch": null, "version": "1.99.0", "release": "5.fc43", "arch": "noarch" }, { "name": "avogadro2-libs", "epoch": null, "version": "1.99.0", "release": "5.fc43", "arch": "src" } ] } RPMResults finished