dge {BiocGenerics} | R Documentation |
Accessors and generic functions used in the context of count datasets
Description
These generic functions provide basic interfaces to operations on and data access to count datasets.
Usage
counts(object, ...)
counts(object, ...) <- value
design(object, ...)
design(object, ...) <- value
dispTable(object, ...)
dispTable(object, ...) <- value
sizeFactors(object, ...)
sizeFactors(object, ...) <- value
conditions(object, ...)
conditions(object, ...) <- value
estimateSizeFactors(object, ...)
estimateDispersions(object, ...)
plotDispEsts(object, ...)
Arguments
object |
Object of class for which methods are defined, e.g.,
|
value |
Value to be assigned to corresponding components of
|
... |
Further arguments, perhaps used by metohds |
Details
For the details, please consult the manual pages of the methods in the DESeq, DESeq2, and DEXSeq packages and the package vignettes.
Author(s)
W. Huber, S. Anders
See Also
-
showMethods
for displaying a summary of the methods defined for a given generic function. -
selectMethod
for getting the definition of a specific method. -
BiocGenerics for a summary of all the generics defined in the BiocGenerics package.
[Package BiocGenerics version 0.54.0 Index]