GOID {AnnotationDbi} | R Documentation |
Descriptions of available values for columns
and
keytypes
for GO.db.
Description
This manual page enumerates the kinds of data represented by the
values returned when the user calls columns
or keytypes
Details
All the possible values for columns
and keytypes
are listed
below.
- GOID:
GO Identifiers
- DEFINITION:
The definition of a GO Term
- ONTOLOGY:
Which of the three Gene Ontologies (BP, CC, or MF)
- TERM:
The actual GO term
To get the latest information about the date stamps and source URLS for the data used to make an annotation package, please use the metadata method as shown in the example below.
Author(s)
Marc Carlson
Examples
library(GO.db)
## List the possible values for columns
columns(GO.db)
## List the possible values for keytypes
keytypes(GO.db)
## get some values back
keys <- head(keys(GO.db))
keys
select(GO.db, keys=keys, columns=c("TERM","ONTOLOGY"),
keytype="GOID")
## More infomation about the dates and original sources for these data:
metadata(GO.db)
[Package AnnotationDbi version 1.58.0 Index]