Warning: Permanently added '52.207.216.123' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8982755-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64 Version: 1.3 PID: 8930 Logging PID: 8931 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 8982755, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': '1844e244678cd009a0c73cdd0b320e56d28b36ae', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/lecris/pybind11/smoldyn', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'smoldyn', 'package_version': '2.72-7', 'project_dirname': 'pybind11', 'project_name': 'pybind11', 'project_owner': 'lecris', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/lecris/pybind11/fedora-rawhide-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'lecris/pybind11--lecris', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'lecris', 'tags': [], 'task_id': '8982755-fedora-rawhide-aarch64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/lecris/pybind11/smoldyn /var/lib/copr-rpmbuild/workspace/workdir-1mgu9cd_/smoldyn --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/lecris/pybind11/smoldyn', '/var/lib/copr-rpmbuild/workspace/workdir-1mgu9cd_/smoldyn', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-1mgu9cd_/smoldyn'... Running: git checkout 1844e244678cd009a0c73cdd0b320e56d28b36ae -- cmd: ['git', 'checkout', '1844e244678cd009a0c73cdd0b320e56d28b36ae', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-1mgu9cd_/smoldyn rc: 0 stdout: stderr: Note: switching to '1844e244678cd009a0c73cdd0b320e56d28b36ae'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 1844e24 automatic import of smoldyn Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-1mgu9cd_/smoldyn rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading Smoldyn-2.72.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o Smoldyn-2.72.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/lecris/pybind11/smoldyn/Smoldyn-2.72.tar.gz/md5/55177f82859a034ac5418e6894089192/Smoldyn-2.72.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 96.4M 100 96.4M 0 0 27.0M 0 0:00:03 0:00:03 --:--:-- 27.0M INFO: Reading stdout from command: md5sum Smoldyn-2.72.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-1mgu9cd_/smoldyn/smoldyn.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-1mgu9cd_/smoldyn --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1746023660.880630 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.1 starting (python version = 3.13.0, NVR = mock-6.1-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-1mgu9cd_/smoldyn/smoldyn.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-1mgu9cd_/smoldyn --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1746023660.880630 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-1mgu9cd_/smoldyn/smoldyn.spec) Config(fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 6.1 INFO: Mock Version: 6.1 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1746023660.880630/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-e4f959d9-e056-4ccf-8870-df00b2138f97 INFO: Checking that 717b01c48ecd44993adc7ae5e380f6e01e7fbb7a8d7032b39d878b4abc404145 image matches host's architecture INFO: Copy content of container 717b01c48ecd44993adc7ae5e380f6e01e7fbb7a8d7032b39d878b4abc404145 to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1746023660.880630/root INFO: mounting 717b01c48ecd44993adc7ae5e380f6e01e7fbb7a8d7032b39d878b4abc404145 with podman image mount INFO: image 717b01c48ecd44993adc7ae5e380f6e01e7fbb7a8d7032b39d878b4abc404145 as /var/lib/containers/storage/overlay/8062c59d99758e18901fafed5066b2fc94472e88ae5703dd249ed80aa55c7644/merged INFO: umounting image 717b01c48ecd44993adc7ae5e380f6e01e7fbb7a8d7032b39d878b4abc404145 (/var/lib/containers/storage/overlay/8062c59d99758e18901fafed5066b2fc94472e88ae5703dd249ed80aa55c7644/merged) with podman image umount INFO: Removing image mock-bootstrap-e4f959d9-e056-4ccf-8870-df00b2138f97 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1746023660.880630/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-5.99.90-4.fc43.aarch64 rpm-sequoia-1.8.0-1.fc43.aarch64 dnf5-5.2.13.1-1.fc43.aarch64 dnf5-plugins-5.2.13.1-1.fc43.aarch64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 23.1 MiB/s | 20.6 MiB | 00m01s Copr repository 100% | 1.9 MiB/s | 63.2 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash aarch64 5.2.37-3.fc43 fedora 8.2 MiB bzip2 aarch64 1.0.8-20.fc42 fedora 171.3 KiB coreutils aarch64 9.7-1.fc43 fedora 8.1 MiB cpio aarch64 2.15-2.fc41 fedora 1.2 MiB diffutils aarch64 3.12-1.fc43 fedora 1.6 MiB fedora-release-common noarch 43-0.15 fedora 20.4 KiB findutils aarch64 1:4.10.0-5.fc42 fedora 1.9 MiB gawk aarch64 5.3.2-1.fc43 fedora 2.6 MiB glibc-minimal-langpack aarch64 2.41.9000-11.fc43 fedora 0.0 B grep aarch64 3.12-1.fc43 fedora 1.0 MiB gzip aarch64 1.13-3.fc42 fedora 424.7 KiB info aarch64 7.2-3.fc42 fedora 421.6 KiB patch aarch64 2.8-1.fc43 fedora 262.6 KiB redhat-rpm-config noarch 343-4.fc43 fedora 185.6 KiB rpm-build aarch64 5.99.90-4.fc43 fedora 593.1 KiB sed aarch64 4.9-4.fc42 fedora 873.2 KiB shadow-utils aarch64 2:4.17.4-1.fc43 fedora 4.5 MiB tar aarch64 2:1.35-5.fc42 fedora 3.0 MiB unzip aarch64 6.0-66.fc42 fedora 470.2 KiB util-linux aarch64 2.40.4-7.fc43 fedora 6.6 MiB which aarch64 2.23-1.fc42 fedora 123.4 KiB xz aarch64 1:5.8.1-1.fc43 fedora 1.4 MiB Installing dependencies: add-determinism aarch64 0.6.0-1.fc43 fedora 2.2 MiB alternatives aarch64 1.32-1.fc43 fedora 90.2 KiB ansible-srpm-macros noarch 1-17.1.fc42 fedora 35.7 KiB audit-libs aarch64 4.0.3-2.fc42 fedora 415.2 KiB binutils aarch64 2.44-3.fc43 fedora 29.3 MiB build-reproducibility-srpm-macros noarch 0.6.0-1.fc43 fedora 735.0 B bzip2-libs aarch64 1.0.8-20.fc42 fedora 72.6 KiB ca-certificates noarch 2024.2.69_v8.0.401-5.fc42 fedora 2.6 MiB coreutils-common aarch64 9.7-1.fc43 fedora 11.3 MiB crypto-policies noarch 20250402-2.git86c0178.fc43 fedora 141.5 KiB curl aarch64 8.13.0-1.fc43 fedora 457.1 KiB cyrus-sasl-lib aarch64 2.1.28-30.fc42 fedora 2.4 MiB debugedit aarch64 5.1-6.fc43 fedora 244.6 KiB dwz aarch64 0.15-9.fc42 fedora 322.6 KiB ed aarch64 1.21-2.fc42 fedora 154.5 KiB efi-srpm-macros noarch 6-3.fc43 fedora 40.1 KiB elfutils aarch64 0.192-8.fc42 fedora 3.1 MiB elfutils-debuginfod-client aarch64 0.192-8.fc42 fedora 143.9 KiB elfutils-default-yama-scope noarch 0.192-8.fc42 fedora 1.8 KiB elfutils-libelf aarch64 0.192-8.fc42 fedora 1.2 MiB elfutils-libs aarch64 0.192-8.fc42 fedora 746.3 KiB fedora-gpg-keys noarch 43-0.2 fedora 129.0 KiB fedora-release noarch 43-0.15 fedora 0.0 B fedora-release-identity-basic noarch 43-0.15 fedora 664.0 B fedora-repos noarch 43-0.2 fedora 4.9 KiB fedora-repos-rawhide noarch 43-0.2 fedora 2.2 KiB file aarch64 5.46-1.fc42 fedora 140.2 KiB file-libs aarch64 5.46-1.fc42 fedora 11.9 MiB filesystem aarch64 3.18-40.fc43 fedora 112.0 B filesystem-srpm-macros noarch 3.18-40.fc43 fedora 38.2 KiB fonts-srpm-macros noarch 1:2.0.5-21.fc42 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-2.fc42 fedora 38.9 KiB fpc-srpm-macros noarch 1.3-14.fc42 fedora 144.0 B gdb-minimal aarch64 16.3-1.fc43 fedora 13.0 MiB gdbm-libs aarch64 1:1.23-9.fc42 fedora 234.0 KiB ghc-srpm-macros noarch 1.9.2-2.fc42 fedora 779.0 B glibc aarch64 2.41.9000-11.fc43 fedora 6.3 MiB glibc-common aarch64 2.41.9000-11.fc43 fedora 1.3 MiB glibc-gconv-extra aarch64 2.41.9000-11.fc43 fedora 18.6 MiB gmp aarch64 1:6.3.0-3.fc43 fedora 657.9 KiB gnat-srpm-macros noarch 6-7.fc42 fedora 1.0 KiB gnupg2 aarch64 2.4.7-3.fc43 fedora 10.4 MiB gnutls aarch64 3.8.9-5.fc43 fedora 3.4 MiB go-srpm-macros noarch 3.6.0-7.fc43 fedora 60.8 KiB ima-evm-utils-libs aarch64 1.6.2-5.fc43 fedora 92.7 KiB jansson aarch64 2.14-2.fc42 fedora 93.2 KiB json-c aarch64 0.18-2.fc42 fedora 138.7 KiB kernel-srpm-macros noarch 1.0-25.fc42 fedora 1.9 KiB keyutils-libs aarch64 1.6.3-5.fc42 fedora 98.3 KiB krb5-libs aarch64 1.21.3-5.fc42 fedora 2.5 MiB libacl aarch64 2.3.2-3.fc42 fedora 66.3 KiB libarchive aarch64 3.7.7-4.fc43 fedora 910.6 KiB libassuan aarch64 2.5.7-3.fc42 fedora 215.8 KiB libattr aarch64 2.5.2-5.fc42 fedora 67.1 KiB libblkid aarch64 2.40.4-7.fc43 fedora 290.5 KiB libbrotli aarch64 1.1.0-6.fc42 fedora 909.5 KiB libcap aarch64 2.76-1.fc43 fedora 508.8 KiB libcap-ng aarch64 0.8.5-4.fc42 fedora 160.9 KiB libcom_err aarch64 1.47.2-3.fc42 fedora 111.2 KiB libcurl aarch64 8.13.0-1.fc43 fedora 858.5 KiB libeconf aarch64 0.7.6-1.fc43 fedora 80.6 KiB libevent aarch64 2.1.12-15.fc42 fedora 1.1 MiB libfdisk aarch64 2.40.4-7.fc43 fedora 418.8 KiB libffi aarch64 3.4.7-4.fc43 fedora 154.7 KiB libfsverity aarch64 1.6-2.fc42 fedora 68.5 KiB libgcc aarch64 15.1.1-1.fc43 fedora 222.2 KiB libgcrypt aarch64 1.11.0-5.fc42 fedora 1.1 MiB libgomp aarch64 15.1.1-1.fc43 fedora 514.0 KiB libgpg-error aarch64 1.55-1.fc43 fedora 971.2 KiB libidn2 aarch64 2.3.8-1.fc43 fedora 560.6 KiB libksba aarch64 1.6.7-3.fc42 fedora 398.4 KiB libmount aarch64 2.40.4-7.fc43 fedora 355.8 KiB libnghttp2 aarch64 1.65.0-1.fc43 fedora 197.9 KiB libpkgconf aarch64 2.3.0-2.fc42 fedora 134.0 KiB libpsl aarch64 0.21.5-5.fc42 fedora 132.5 KiB libselinux aarch64 3.8-1.fc42 fedora 201.1 KiB libsemanage aarch64 3.8-1.fc42 fedora 360.0 KiB libsepol aarch64 3.8-1.fc42 fedora 809.9 KiB libsmartcols aarch64 2.40.4-7.fc43 fedora 224.4 KiB libssh aarch64 0.11.1-4.fc42 fedora 585.4 KiB libssh-config noarch 0.11.1-4.fc42 fedora 277.0 B libstdc++ aarch64 15.1.1-1.fc43 fedora 2.8 MiB libtasn1 aarch64 4.20.0-1.fc43 fedora 220.3 KiB libtool-ltdl aarch64 2.5.4-4.fc42 fedora 94.0 KiB libunistring aarch64 1.1-9.fc42 fedora 1.7 MiB libusb1 aarch64 1.0.28-2.fc43 fedora 178.7 KiB libuuid aarch64 2.40.4-7.fc43 fedora 69.4 KiB libverto aarch64 0.3.2-10.fc42 fedora 69.4 KiB libxcrypt aarch64 4.4.38-7.fc43 fedora 272.5 KiB libxml2 aarch64 2.12.10-1.fc43 fedora 1.9 MiB libzstd aarch64 1.5.7-1.fc43 fedora 667.7 KiB lua-libs aarch64 5.4.7-3.fc43 fedora 328.9 KiB lua-srpm-macros noarch 1-15.fc42 fedora 1.3 KiB lz4-libs aarch64 1.10.0-2.fc42 fedora 197.4 KiB mpfr aarch64 4.2.2-1.fc43 fedora 755.6 KiB ncurses-base noarch 6.5-5.20250125.fc42 fedora 326.8 KiB ncurses-libs aarch64 6.5-5.20250125.fc42 fedora 1.2 MiB nettle aarch64 3.10.1-1.fc43 fedora 765.3 KiB npth aarch64 1.8-2.fc42 fedora 93.5 KiB ocaml-srpm-macros noarch 10-4.fc42 fedora 1.9 KiB openblas-srpm-macros noarch 2-19.fc42 fedora 112.0 B openldap aarch64 2.6.9-5.fc43 fedora 697.4 KiB openssl-libs aarch64 1:3.5.0-3.fc43 fedora 7.4 MiB p11-kit aarch64 0.25.5-5.fc42 fedora 2.4 MiB p11-kit-trust aarch64 0.25.5-5.fc42 fedora 463.3 KiB package-notes-srpm-macros noarch 0.5-13.fc42 fedora 1.6 KiB pam-libs aarch64 1.7.0-4.fc42 fedora 222.9 KiB pcre2 aarch64 10.45-1.fc43 fedora 713.6 KiB pcre2-syntax noarch 10.45-1.fc43 fedora 273.9 KiB perl-srpm-macros noarch 1-57.fc42 fedora 861.0 B pkgconf aarch64 2.3.0-2.fc42 fedora 112.4 KiB pkgconf-m4 noarch 2.3.0-2.fc42 fedora 14.4 KiB pkgconf-pkg-config aarch64 2.3.0-2.fc42 fedora 990.0 B popt aarch64 1.19-8.fc42 fedora 144.8 KiB publicsuffix-list-dafsa noarch 20250116-1.fc42 fedora 68.5 KiB pyproject-srpm-macros noarch 1.18.1-1.fc43 fedora 1.9 KiB python-srpm-macros noarch 3.13-5.fc43 fedora 51.7 KiB qt5-srpm-macros noarch 5.15.16-1.fc43 fedora 500.0 B qt6-srpm-macros noarch 6.9.0-2.fc43 fedora 464.0 B readline aarch64 8.2-13.fc43 fedora 561.0 KiB rpm aarch64 5.99.90-4.fc43 fedora 3.3 MiB rpm-build-libs aarch64 5.99.90-4.fc43 fedora 264.1 KiB rpm-libs aarch64 5.99.90-4.fc43 fedora 995.3 KiB rpm-sequoia aarch64 1.8.0-1.fc43 fedora 2.4 MiB rpm-sign-libs aarch64 5.99.90-4.fc43 fedora 67.7 KiB rust-srpm-macros noarch 26.3-4.fc42 fedora 4.8 KiB setup noarch 2.15.0-23.fc43 fedora 724.7 KiB sqlite-libs aarch64 3.49.0-1.fc43 fedora 1.5 MiB systemd-libs aarch64 257.5-2.fc43 fedora 2.3 MiB systemd-standalone-sysusers aarch64 257.5-2.fc43 fedora 329.4 KiB tpm2-tss aarch64 4.1.3-7.fc43 fedora 2.1 MiB tree-sitter-srpm-macros noarch 0.2.4-1.fc43 fedora 7.5 KiB util-linux-core aarch64 2.40.4-7.fc43 fedora 2.4 MiB xxhash-libs aarch64 0.8.3-2.fc42 fedora 85.9 KiB xz-libs aarch64 1:5.8.1-1.fc43 fedora 201.5 KiB zig-srpm-macros noarch 1-4.fc42 fedora 1.1 KiB zip aarch64 3.0-43.fc42 fedora 762.5 KiB zlib-ng-compat aarch64 2.2.4-2.fc43 fedora 133.4 KiB zstd aarch64 1.5.7-1.fc43 fedora 1.5 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 161 packages Total size of inbound packages is 57 MiB. Need to download 57 MiB. After this operation, 224 MiB extra will be used (install 224 MiB, remove 0 B). [ 1/161] bzip2-0:1.0.8-20.fc42.aarch64 100% | 3.9 MiB/s | 52.0 KiB | 00m00s [ 2/161] bash-0:5.2.37-3.fc43.aarch64 100% | 85.0 MiB/s | 1.8 MiB | 00m00s [ 3/161] coreutils-0:9.7-1.fc43.aarch6 100% | 47.5 MiB/s | 1.1 MiB | 00m00s [ 4/161] cpio-0:2.15-2.fc41.aarch64 100% | 25.9 MiB/s | 291.4 KiB | 00m00s [ 5/161] fedora-release-common-0:43-0. 100% | 2.1 MiB/s | 26.3 KiB | 00m00s [ 6/161] findutils-1:4.10.0-5.fc42.aar 100% | 36.1 MiB/s | 554.3 KiB | 00m00s [ 7/161] diffutils-0:3.12-1.fc43.aarch 100% | 18.1 MiB/s | 389.9 KiB | 00m00s [ 8/161] gawk-0:5.3.2-1.fc43.aarch64 100% | 101.3 MiB/s | 1.1 MiB | 00m00s [ 9/161] glibc-minimal-langpack-0:2.41 100% | 3.1 MiB/s | 22.4 KiB | 00m00s [ 10/161] grep-0:3.12-1.fc43.aarch64 100% | 41.3 MiB/s | 296.4 KiB | 00m00s [ 11/161] info-0:7.2-3.fc42.aarch64 100% | 87.7 MiB/s | 179.5 KiB | 00m00s [ 12/161] patch-0:2.8-1.fc43.aarch64 100% | 54.4 MiB/s | 111.5 KiB | 00m00s [ 13/161] gzip-0:1.13-3.fc42.aarch64 100% | 32.8 MiB/s | 168.1 KiB | 00m00s [ 14/161] redhat-rpm-config-0:343-4.fc4 100% | 39.7 MiB/s | 81.3 KiB | 00m00s [ 15/161] rpm-build-0:5.99.90-4.fc43.aa 100% | 41.7 MiB/s | 128.0 KiB | 00m00s [ 16/161] sed-0:4.9-4.fc42.aarch64 100% | 102.5 MiB/s | 314.8 KiB | 00m00s [ 17/161] tar-2:1.35-5.fc42.aarch64 100% | 166.6 MiB/s | 853.0 KiB | 00m00s [ 18/161] shadow-utils-2:4.17.4-1.fc43. 100% | 146.5 MiB/s | 1.3 MiB | 00m00s [ 19/161] unzip-0:6.0-66.fc42.aarch64 100% | 29.8 MiB/s | 183.0 KiB | 00m00s [ 20/161] which-0:2.23-1.fc42.aarch64 100% | 6.7 MiB/s | 41.3 KiB | 00m00s [ 21/161] util-linux-0:2.40.4-7.fc43.aa 100% | 114.0 MiB/s | 1.1 MiB | 00m00s [ 22/161] xz-1:5.8.1-1.fc43.aarch64 100% | 50.9 MiB/s | 573.3 KiB | 00m00s [ 23/161] ncurses-libs-0:6.5-5.20250125 100% | 63.3 MiB/s | 324.2 KiB | 00m00s [ 24/161] filesystem-0:3.18-40.fc43.aar 100% | 88.8 MiB/s | 1.3 MiB | 00m00s [ 25/161] glibc-0:2.41.9000-11.fc43.aar 100% | 111.7 MiB/s | 1.8 MiB | 00m00s [ 26/161] bzip2-libs-0:1.0.8-20.fc42.aa 100% | 6.7 MiB/s | 41.2 KiB | 00m00s [ 27/161] libacl-0:2.3.2-3.fc42.aarch64 100% | 11.1 MiB/s | 22.8 KiB | 00m00s [ 28/161] gmp-1:6.3.0-3.fc43.aarch64 100% | 66.5 MiB/s | 272.4 KiB | 00m00s [ 29/161] libattr-0:2.5.2-5.fc42.aarch6 100% | 8.0 MiB/s | 16.4 KiB | 00m00s [ 30/161] coreutils-common-0:9.7-1.fc43 100% | 190.9 MiB/s | 2.1 MiB | 00m00s [ 31/161] libcap-0:2.76-1.fc43.aarch64 100% | 21.4 MiB/s | 87.8 KiB | 00m00s [ 32/161] libselinux-0:3.8-1.fc42.aarch 100% | 23.4 MiB/s | 95.9 KiB | 00m00s [ 33/161] fedora-repos-0:43-0.2.noarch 100% | 9.0 MiB/s | 9.2 KiB | 00m00s [ 34/161] systemd-libs-0:257.5-2.fc43.a 100% | 91.9 MiB/s | 752.8 KiB | 00m00s [ 35/161] mpfr-0:4.2.2-1.fc43.aarch64 100% | 34.9 MiB/s | 322.0 KiB | 00m00s [ 36/161] openssl-libs-1:3.5.0-3.fc43.a 100% | 152.2 MiB/s | 2.4 MiB | 00m00s [ 37/161] readline-0:8.2-13.fc43.aarch6 100% | 25.8 MiB/s | 211.6 KiB | 00m00s [ 38/161] glibc-common-0:2.41.9000-11.f 100% | 57.9 MiB/s | 296.5 KiB | 00m00s [ 39/161] ansible-srpm-macros-0:1-17.1. 100% | 19.8 MiB/s | 20.3 KiB | 00m00s [ 40/161] pcre2-0:10.45-1.fc43.aarch64 100% | 59.2 MiB/s | 242.7 KiB | 00m00s [ 41/161] ed-0:1.21-2.fc42.aarch64 100% | 20.0 MiB/s | 81.9 KiB | 00m00s [ 42/161] build-reproducibility-srpm-ma 100% | 11.4 MiB/s | 11.7 KiB | 00m00s [ 43/161] file-0:5.46-1.fc42.aarch64 100% | 15.9 MiB/s | 48.9 KiB | 00m00s [ 44/161] efi-srpm-macros-0:6-3.fc43.no 100% | 5.5 MiB/s | 22.5 KiB | 00m00s [ 45/161] dwz-0:0.15-9.fc42.aarch64 100% | 25.7 MiB/s | 131.7 KiB | 00m00s [ 46/161] fonts-srpm-macros-1:2.0.5-21. 100% | 26.5 MiB/s | 27.1 KiB | 00m00s [ 47/161] filesystem-srpm-macros-0:3.18 100% | 12.5 MiB/s | 25.7 KiB | 00m00s [ 48/161] forge-srpm-macros-0:0.4.0-2.f 100% | 19.4 MiB/s | 19.9 KiB | 00m00s [ 49/161] fpc-srpm-macros-0:1.3-14.fc42 100% | 3.9 MiB/s | 8.0 KiB | 00m00s [ 50/161] ghc-srpm-macros-0:1.9.2-2.fc4 100% | 4.5 MiB/s | 9.2 KiB | 00m00s [ 51/161] gnat-srpm-macros-0:6-7.fc42.n 100% | 4.2 MiB/s | 8.6 KiB | 00m00s [ 52/161] go-srpm-macros-0:3.6.0-7.fc43 100% | 27.0 MiB/s | 27.6 KiB | 00m00s [ 53/161] kernel-srpm-macros-0:1.0-25.f 100% | 9.6 MiB/s | 9.9 KiB | 00m00s [ 54/161] lua-srpm-macros-0:1-15.fc42.n 100% | 8.7 MiB/s | 8.9 KiB | 00m00s [ 55/161] ocaml-srpm-macros-0:10-4.fc42 100% | 9.0 MiB/s | 9.2 KiB | 00m00s [ 56/161] openblas-srpm-macros-0:2-19.f 100% | 3.8 MiB/s | 7.8 KiB | 00m00s [ 57/161] package-notes-srpm-macros-0:0 100% | 4.5 MiB/s | 9.3 KiB | 00m00s [ 58/161] perl-srpm-macros-0:1-57.fc42. 100% | 4.2 MiB/s | 8.5 KiB | 00m00s [ 59/161] qt5-srpm-macros-0:5.15.16-1.f 100% | 4.3 MiB/s | 8.8 KiB | 00m00s [ 60/161] pyproject-srpm-macros-0:1.18. 100% | 4.5 MiB/s | 13.9 KiB | 00m00s [ 61/161] python-srpm-macros-0:3.13-5.f 100% | 7.6 MiB/s | 23.2 KiB | 00m00s [ 62/161] qt6-srpm-macros-0:6.9.0-2.fc4 100% | 9.2 MiB/s | 9.4 KiB | 00m00s [ 63/161] rust-srpm-macros-0:26.3-4.fc4 100% | 11.4 MiB/s | 11.7 KiB | 00m00s [ 64/161] tree-sitter-srpm-macros-0:0.2 100% | 12.2 MiB/s | 12.5 KiB | 00m00s [ 65/161] zig-srpm-macros-0:1-4.fc42.no 100% | 8.1 MiB/s | 8.2 KiB | 00m00s [ 66/161] rpm-0:5.99.90-4.fc43.aarch64 100% | 108.5 MiB/s | 555.7 KiB | 00m00s [ 67/161] zip-0:3.0-43.fc42.aarch64 100% | 85.0 MiB/s | 261.1 KiB | 00m00s [ 68/161] debugedit-0:5.1-6.fc43.aarch6 100% | 19.2 MiB/s | 78.5 KiB | 00m00s [ 69/161] elfutils-0:0.192-8.fc42.aarch 100% | 87.1 MiB/s | 535.1 KiB | 00m00s [ 70/161] elfutils-libelf-0:0.192-8.fc4 100% | 33.8 MiB/s | 207.4 KiB | 00m00s [ 71/161] libarchive-0:3.7.7-4.fc43.aar 100% | 66.0 MiB/s | 405.7 KiB | 00m00s [ 72/161] libgcc-0:15.1.1-1.fc43.aarch6 100% | 21.5 MiB/s | 110.1 KiB | 00m00s [ 73/161] pkgconf-pkg-config-0:2.3.0-2. 100% | 1.6 MiB/s | 9.9 KiB | 00m00s [ 74/161] libstdc++-0:15.1.1-1.fc43.aar 100% | 63.3 MiB/s | 843.0 KiB | 00m00s [ 75/161] popt-0:1.19-8.fc42.aarch64 100% | 8.0 MiB/s | 65.4 KiB | 00m00s [ 76/161] rpm-build-libs-0:5.99.90-4.fc 100% | 16.4 MiB/s | 117.8 KiB | 00m00s [ 77/161] binutils-0:2.44-3.fc43.aarch6 100% | 134.1 MiB/s | 6.2 MiB | 00m00s [ 78/161] rpm-libs-0:5.99.90-4.fc43.aar 100% | 26.3 MiB/s | 376.8 KiB | 00m00s [ 79/161] zstd-0:1.5.7-1.fc43.aarch64 100% | 43.5 MiB/s | 445.5 KiB | 00m00s [ 80/161] libeconf-0:0.7.6-1.fc43.aarch 100% | 34.5 MiB/s | 35.3 KiB | 00m00s [ 81/161] audit-libs-0:4.0.3-2.fc42.aar 100% | 41.0 MiB/s | 126.0 KiB | 00m00s [ 82/161] libsemanage-0:3.8-1.fc42.aarc 100% | 38.7 MiB/s | 118.8 KiB | 00m00s [ 83/161] libxcrypt-0:4.4.38-7.fc43.aar 100% | 60.6 MiB/s | 124.1 KiB | 00m00s [ 84/161] pam-libs-0:1.7.0-4.fc42.aarch 100% | 28.3 MiB/s | 58.0 KiB | 00m00s [ 85/161] libblkid-0:2.40.4-7.fc43.aarc 100% | 117.6 MiB/s | 120.4 KiB | 00m00s [ 86/161] libcap-ng-0:0.8.5-4.fc42.aarc 100% | 31.5 MiB/s | 32.3 KiB | 00m00s [ 87/161] libmount-0:2.40.4-7.fc43.aarc 100% | 73.2 MiB/s | 149.8 KiB | 00m00s [ 88/161] libfdisk-0:2.40.4-7.fc43.aarc 100% | 49.3 MiB/s | 151.3 KiB | 00m00s [ 89/161] setup-0:2.15.0-23.fc43.noarch 100% | 25.6 MiB/s | 157.2 KiB | 00m00s [ 90/161] libsmartcols-0:2.40.4-7.fc43. 100% | 25.8 MiB/s | 79.4 KiB | 00m00s [ 91/161] libuuid-0:2.40.4-7.fc43.aarch 100% | 8.2 MiB/s | 25.3 KiB | 00m00s [ 92/161] zlib-ng-compat-0:2.2.4-2.fc43 100% | 32.1 MiB/s | 65.8 KiB | 00m00s [ 93/161] util-linux-core-0:2.40.4-7.fc 100% | 101.6 MiB/s | 519.9 KiB | 00m00s [ 94/161] xz-libs-1:5.8.1-1.fc43.aarch6 100% | 18.1 MiB/s | 111.3 KiB | 00m00s [ 95/161] ncurses-base-0:6.5-5.20250125 100% | 17.2 MiB/s | 88.1 KiB | 00m00s [ 96/161] glibc-gconv-extra-0:2.41.9000 100% | 149.3 MiB/s | 1.6 MiB | 00m00s [ 97/161] libsepol-0:3.8-1.fc42.aarch64 100% | 45.2 MiB/s | 323.9 KiB | 00m00s [ 98/161] crypto-policies-0:20250402-2. 100% | 95.0 MiB/s | 97.3 KiB | 00m00s [ 99/161] fedora-gpg-keys-0:43-0.2.noar 100% | 44.5 MiB/s | 136.6 KiB | 00m00s [100/161] ca-certificates-0:2024.2.69_v 100% | 102.5 MiB/s | 945.0 KiB | 00m00s [101/161] fedora-repos-rawhide-0:43-0.2 100% | 2.9 MiB/s | 8.8 KiB | 00m00s [102/161] pcre2-syntax-0:10.45-1.fc43.n 100% | 79.0 MiB/s | 161.7 KiB | 00m00s [103/161] file-libs-0:5.46-1.fc42.aarch 100% | 92.0 MiB/s | 847.6 KiB | 00m00s [104/161] curl-0:8.13.0-1.fc43.aarch64 100% | 24.3 MiB/s | 223.7 KiB | 00m00s [105/161] add-determinism-0:0.6.0-1.fc4 100% | 55.5 MiB/s | 852.0 KiB | 00m00s [106/161] alternatives-0:1.32-1.fc43.aa 100% | 6.6 MiB/s | 40.8 KiB | 00m00s [107/161] elfutils-debuginfod-client-0: 100% | 7.5 MiB/s | 46.0 KiB | 00m00s [108/161] jansson-0:2.14-2.fc42.aarch64 100% | 15.2 MiB/s | 46.8 KiB | 00m00s [109/161] libzstd-0:1.5.7-1.fc43.aarch6 100% | 92.2 MiB/s | 283.3 KiB | 00m00s [110/161] elfutils-libs-0:0.192-8.fc42. 100% | 50.8 MiB/s | 260.0 KiB | 00m00s [111/161] lz4-libs-0:1.10.0-2.fc42.aarc 100% | 38.9 MiB/s | 79.6 KiB | 00m00s [112/161] libxml2-0:2.12.10-1.fc43.aarc 100% | 110.6 MiB/s | 679.8 KiB | 00m00s [113/161] pkgconf-0:2.3.0-2.fc42.aarch6 100% | 10.9 MiB/s | 44.7 KiB | 00m00s [114/161] pkgconf-m4-0:2.3.0-2.fc42.noa 100% | 3.5 MiB/s | 14.2 KiB | 00m00s [115/161] lua-libs-0:5.4.7-3.fc43.aarch 100% | 62.7 MiB/s | 128.4 KiB | 00m00s [116/161] libgomp-0:15.1.1-1.fc43.aarch 100% | 85.9 MiB/s | 351.9 KiB | 00m00s [117/161] rpm-sign-libs-0:5.99.90-4.fc4 100% | 9.3 MiB/s | 28.7 KiB | 00m00s [118/161] libffi-0:3.4.7-4.fc43.aarch64 100% | 18.9 MiB/s | 38.7 KiB | 00m00s [119/161] rpm-sequoia-0:1.8.0-1.fc43.aa 100% | 145.9 MiB/s | 896.3 KiB | 00m00s [120/161] sqlite-libs-0:3.49.0-1.fc43.a 100% | 103.8 MiB/s | 743.9 KiB | 00m00s [121/161] p11-kit-trust-0:0.25.5-5.fc42 100% | 64.0 MiB/s | 131.1 KiB | 00m00s [122/161] p11-kit-0:0.25.5-5.fc42.aarch 100% | 92.2 MiB/s | 472.2 KiB | 00m00s [123/161] elfutils-default-yama-scope-0 100% | 4.1 MiB/s | 12.6 KiB | 00m00s [124/161] json-c-0:0.18-2.fc42.aarch64 100% | 11.0 MiB/s | 44.9 KiB | 00m00s [125/161] libpkgconf-0:2.3.0-2.fc42.aar 100% | 12.4 MiB/s | 38.2 KiB | 00m00s [126/161] ima-evm-utils-libs-0:1.6.2-5. 100% | 14.4 MiB/s | 29.5 KiB | 00m00s [127/161] libfsverity-0:1.6-2.fc42.aarc 100% | 9.1 MiB/s | 18.7 KiB | 00m00s [128/161] libtasn1-0:4.20.0-1.fc43.aarc 100% | 36.0 MiB/s | 73.7 KiB | 00m00s [129/161] gnupg2-0:2.4.7-3.fc43.aarch64 100% | 226.8 MiB/s | 2.7 MiB | 00m00s [130/161] gnutls-0:3.8.9-5.fc43.aarch64 100% | 104.2 MiB/s | 1.1 MiB | 00m00s [131/161] libassuan-0:2.5.7-3.fc42.aarc 100% | 8.1 MiB/s | 66.7 KiB | 00m00s [132/161] libgcrypt-0:1.11.0-5.fc42.aar 100% | 122.4 MiB/s | 501.4 KiB | 00m00s [133/161] libksba-0:1.6.7-3.fc42.aarch6 100% | 38.8 MiB/s | 159.0 KiB | 00m00s [134/161] libgpg-error-0:1.55-1.fc43.aa 100% | 47.7 MiB/s | 244.1 KiB | 00m00s [135/161] npth-0:1.8-2.fc42.aarch64 100% | 8.2 MiB/s | 25.2 KiB | 00m00s [136/161] openldap-0:2.6.9-5.fc43.aarch 100% | 61.3 MiB/s | 251.0 KiB | 00m00s [137/161] tpm2-tss-0:4.1.3-7.fc43.aarch 100% | 97.4 MiB/s | 398.9 KiB | 00m00s [138/161] libidn2-0:2.3.8-1.fc43.aarch6 100% | 42.6 MiB/s | 174.7 KiB | 00m00s [139/161] libunistring-0:1.1-9.fc42.aar 100% | 131.7 MiB/s | 539.4 KiB | 00m00s [140/161] nettle-0:3.10.1-1.fc43.aarch6 100% | 103.7 MiB/s | 424.7 KiB | 00m00s [141/161] cyrus-sasl-lib-0:2.1.28-30.fc 100% | 126.3 MiB/s | 776.2 KiB | 00m00s [142/161] libtool-ltdl-0:2.5.4-4.fc42.a 100% | 17.3 MiB/s | 35.4 KiB | 00m00s [143/161] libevent-0:2.1.12-15.fc42.aar 100% | 62.2 MiB/s | 254.7 KiB | 00m00s [144/161] libusb1-0:1.0.28-2.fc43.aarch 100% | 37.7 MiB/s | 77.1 KiB | 00m00s [145/161] gdbm-libs-1:1.23-9.fc42.aarch 100% | 27.4 MiB/s | 56.2 KiB | 00m00s [146/161] fedora-release-0:43-0.15.noar 100% | 7.5 MiB/s | 15.3 KiB | 00m00s [147/161] systemd-standalone-sysusers-0 100% | 62.4 MiB/s | 127.7 KiB | 00m00s [148/161] xxhash-libs-0:0.8.3-2.fc42.aa 100% | 8.5 MiB/s | 34.8 KiB | 00m00s [149/161] fedora-release-identity-basic 100% | 3.9 MiB/s | 16.0 KiB | 00m00s [150/161] libcurl-0:8.13.0-1.fc43.aarch 100% | 61.3 MiB/s | 376.6 KiB | 00m00s [151/161] krb5-libs-0:1.21.3-5.fc42.aar 100% | 81.9 MiB/s | 754.7 KiB | 00m00s [152/161] gdb-minimal-0:16.3-1.fc43.aar 100% | 198.4 MiB/s | 4.2 MiB | 00m00s [153/161] libbrotli-0:1.1.0-6.fc42.aarc 100% | 33.3 MiB/s | 340.5 KiB | 00m00s [154/161] libnghttp2-0:1.65.0-1.fc43.aa 100% | 10.1 MiB/s | 72.6 KiB | 00m00s [155/161] libpsl-0:0.21.5-5.fc42.aarch6 100% | 15.7 MiB/s | 64.2 KiB | 00m00s [156/161] keyutils-libs-0:1.6.3-5.fc42. 100% | 10.3 MiB/s | 31.8 KiB | 00m00s [157/161] libssh-0:0.11.1-4.fc42.aarch6 100% | 56.2 MiB/s | 230.3 KiB | 00m00s [158/161] libcom_err-0:1.47.2-3.fc42.aa 100% | 8.7 MiB/s | 26.8 KiB | 00m00s [159/161] libverto-0:0.3.2-10.fc42.aarc 100% | 6.8 MiB/s | 20.8 KiB | 00m00s [160/161] publicsuffix-list-dafsa-0:202 100% | 19.2 MiB/s | 58.8 KiB | 00m00s [161/161] libssh-config-0:0.11.1-4.fc42 100% | 4.4 MiB/s | 9.0 KiB | 00m00s -------------------------------------------------------------------------------- [161/161] Total 100% | 85.6 MiB/s | 57.1 MiB | 00m01s Running transaction Importing OpenPGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. Importing OpenPGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. Importing OpenPGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing OpenPGP key 0x6D9F90A6: UserID : "Fedora (44) " Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. [ 1/163] Verify package files 100% | 1.4 KiB/s | 161.0 B | 00m00s [ 2/163] Prepare transaction 100% | 2.5 KiB/s | 161.0 B | 00m00s [ 3/163] Installing libgcc-0:15.1.1-1. 100% | 109.3 MiB/s | 223.9 KiB | 00m00s [ 4/163] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 5/163] Installing publicsuffix-list- 100% | 67.6 MiB/s | 69.2 KiB | 00m00s [ 6/163] Installing fedora-release-ide 100% | 898.4 KiB/s | 920.0 B | 00m00s [ 7/163] Installing fedora-gpg-keys-0: 100% | 24.5 MiB/s | 175.9 KiB | 00m00s [ 8/163] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 9/163] Installing fedora-repos-0:43- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/163] Installing fedora-release-com 100% | 24.1 MiB/s | 24.7 KiB | 00m00s [ 11/163] Installing fedora-release-0:4 100% | 15.1 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-23.fc43.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-23.fc43.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 12/163] Installing setup-0:2.15.0-23. 100% | 35.7 MiB/s | 730.3 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 13/163] Installing filesystem-0:3.18- 100% | 1.7 MiB/s | 212.4 KiB | 00m00s [ 14/163] Installing pkgconf-m4-0:2.3.0 100% | 14.5 MiB/s | 14.8 KiB | 00m00s [ 15/163] Installing pcre2-syntax-0:10. 100% | 135.0 MiB/s | 276.4 KiB | 00m00s [ 16/163] Installing ncurses-base-0:6.5 100% | 43.0 MiB/s | 352.2 KiB | 00m00s [ 17/163] Installing bash-0:5.2.37-3.fc 100% | 178.0 MiB/s | 8.2 MiB | 00m00s [ 18/163] Installing glibc-common-0:2.4 100% | 55.2 MiB/s | 1.3 MiB | 00m00s [ 19/163] Installing glibc-gconv-extra- 100% | 333.3 MiB/s | 18.7 MiB | 00m00s [ 20/163] Installing glibc-0:2.41.9000- 100% | 133.5 MiB/s | 6.3 MiB | 00m00s [ 21/163] Installing ncurses-libs-0:6.5 100% | 207.9 MiB/s | 1.2 MiB | 00m00s [ 22/163] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 23/163] Installing zlib-ng-compat-0:2 100% | 131.1 MiB/s | 134.2 KiB | 00m00s [ 24/163] Installing bzip2-libs-0:1.0.8 100% | 72.0 MiB/s | 73.7 KiB | 00m00s [ 25/163] Installing libstdc++-0:15.1.1 100% | 276.5 MiB/s | 2.8 MiB | 00m00s [ 26/163] Installing xz-libs-1:5.8.1-1. 100% | 197.9 MiB/s | 202.6 KiB | 00m00s [ 27/163] Installing gmp-1:6.3.0-3.fc43 100% | 214.9 MiB/s | 660.1 KiB | 00m00s [ 28/163] Installing libuuid-0:2.40.4-7 100% | 68.9 MiB/s | 70.5 KiB | 00m00s [ 29/163] Installing readline-0:8.2-13. 100% | 183.3 MiB/s | 563.2 KiB | 00m00s [ 30/163] Installing popt-0:1.19-8.fc42 100% | 37.0 MiB/s | 151.4 KiB | 00m00s [ 31/163] Installing libblkid-0:2.40.4- 100% | 142.3 MiB/s | 291.5 KiB | 00m00s [ 32/163] Installing libxcrypt-0:4.4.38 100% | 134.4 MiB/s | 275.2 KiB | 00m00s [ 33/163] Installing libzstd-0:1.5.7-1. 100% | 217.8 MiB/s | 669.0 KiB | 00m00s [ 34/163] Installing elfutils-libelf-0: 100% | 237.9 MiB/s | 1.2 MiB | 00m00s [ 35/163] Installing libgpg-error-0:1.5 100% | 43.4 MiB/s | 977.1 KiB | 00m00s [ 36/163] Installing libattr-0:2.5.2-5. 100% | 66.5 MiB/s | 68.0 KiB | 00m00s [ 37/163] Installing libacl-0:2.3.2-3.f 100% | 65.5 MiB/s | 67.1 KiB | 00m00s [ 38/163] Installing libtasn1-0:4.20.0- 100% | 108.5 MiB/s | 222.2 KiB | 00m00s [ 39/163] Installing libunistring-0:1.1 100% | 291.0 MiB/s | 1.7 MiB | 00m00s [ 40/163] Installing libidn2-0:2.3.8-1. 100% | 46.1 MiB/s | 566.7 KiB | 00m00s [ 41/163] Installing crypto-policies-0: 100% | 16.3 MiB/s | 166.6 KiB | 00m00s [ 42/163] Installing dwz-0:0.15-9.fc42. 100% | 15.8 MiB/s | 323.9 KiB | 00m00s [ 43/163] Installing mpfr-0:4.2.2-1.fc4 100% | 184.9 MiB/s | 757.2 KiB | 00m00s [ 44/163] Installing gawk-0:5.3.2-1.fc4 100% | 92.2 MiB/s | 2.6 MiB | 00m00s [ 45/163] Installing unzip-0:6.0-66.fc4 100% | 23.1 MiB/s | 473.7 KiB | 00m00s [ 46/163] Installing file-libs-0:5.46-1 100% | 495.0 MiB/s | 11.9 MiB | 00m00s [ 47/163] Installing file-0:5.46-1.fc42 100% | 7.3 MiB/s | 141.7 KiB | 00m00s [ 48/163] Installing pcre2-0:10.45-1.fc 100% | 232.7 MiB/s | 715.0 KiB | 00m00s [ 49/163] Installing grep-0:3.12-1.fc43 100% | 41.5 MiB/s | 1.0 MiB | 00m00s [ 50/163] Installing xz-1:5.8.1-1.fc43. 100% | 54.4 MiB/s | 1.4 MiB | 00m00s [ 51/163] Installing libeconf-0:0.7.6-1 100% | 80.4 MiB/s | 82.3 KiB | 00m00s [ 52/163] Installing libcap-ng-0:0.8.5- 100% | 159.0 MiB/s | 162.8 KiB | 00m00s [ 53/163] Installing audit-libs-0:4.0.3 100% | 203.7 MiB/s | 417.2 KiB | 00m00s [ 54/163] Installing pam-libs-0:1.7.0-4 100% | 110.0 MiB/s | 225.3 KiB | 00m00s [ 55/163] Installing libcap-0:2.76-1.fc 100% | 25.1 MiB/s | 513.9 KiB | 00m00s [ 56/163] Installing systemd-libs-0:257 100% | 259.5 MiB/s | 2.3 MiB | 00m00s [ 57/163] Installing libsmartcols-0:2.4 100% | 220.2 MiB/s | 225.4 KiB | 00m00s [ 58/163] Installing libsepol-0:3.8-1.f 100% | 264.0 MiB/s | 810.9 KiB | 00m00s [ 59/163] Installing libselinux-0:3.8-1 100% | 98.8 MiB/s | 202.3 KiB | 00m00s [ 60/163] Installing findutils-1:4.10.0 100% | 73.8 MiB/s | 1.9 MiB | 00m00s [ 61/163] Installing sed-0:4.9-4.fc42.a 100% | 37.4 MiB/s | 881.4 KiB | 00m00s [ 62/163] Installing libmount-0:2.40.4- 100% | 174.3 MiB/s | 356.9 KiB | 00m00s [ 63/163] Installing alternatives-0:1.3 100% | 5.0 MiB/s | 91.8 KiB | 00m00s [ 64/163] Installing lz4-libs-0:1.10.0- 100% | 193.9 MiB/s | 198.5 KiB | 00m00s [ 65/163] Installing lua-libs-0:5.4.7-3 100% | 161.2 MiB/s | 330.1 KiB | 00m00s [ 66/163] Installing sqlite-libs-0:3.49 100% | 250.2 MiB/s | 1.5 MiB | 00m00s [ 67/163] Installing libffi-0:3.4.7-4.f 100% | 76.2 MiB/s | 156.1 KiB | 00m00s [ 68/163] Installing p11-kit-0:0.25.5-5 100% | 79.8 MiB/s | 2.4 MiB | 00m00s [ 69/163] Installing p11-kit-trust-0:0. 100% | 16.8 MiB/s | 465.0 KiB | 00m00s [ 70/163] Installing json-c-0:0.18-2.fc 100% | 136.7 MiB/s | 139.9 KiB | 00m00s [ 71/163] Installing zstd-0:1.5.7-1.fc4 100% | 65.5 MiB/s | 1.5 MiB | 00m00s [ 72/163] Installing util-linux-core-0: 100% | 82.3 MiB/s | 2.4 MiB | 00m00s [ 73/163] Installing tar-2:1.35-5.fc42. 100% | 103.6 MiB/s | 3.0 MiB | 00m00s [ 74/163] Installing libsemanage-0:3.8- 100% | 176.7 MiB/s | 361.8 KiB | 00m00s [ 75/163] Installing systemd-standalone 100% | 17.0 MiB/s | 329.9 KiB | 00m00s [ 76/163] Installing libusb1-0:1.0.28-2 100% | 88.1 MiB/s | 180.3 KiB | 00m00s [ 77/163] Installing zip-0:3.0-43.fc42. 100% | 35.6 MiB/s | 766.4 KiB | 00m00s [ 78/163] Installing libpsl-0:0.21.5-5. 100% | 130.5 MiB/s | 133.6 KiB | 00m00s [ 79/163] Installing libassuan-0:2.5.7- 100% | 106.3 MiB/s | 217.7 KiB | 00m00s [ 80/163] Installing libgcrypt-0:1.11.0 100% | 226.0 MiB/s | 1.1 MiB | 00m00s [ 81/163] Installing libksba-0:1.6.7-3. 100% | 130.5 MiB/s | 401.0 KiB | 00m00s [ 82/163] Installing libfdisk-0:2.40.4- 100% | 205.0 MiB/s | 419.9 KiB | 00m00s [ 83/163] Installing nettle-0:3.10.1-1. 100% | 187.6 MiB/s | 768.4 KiB | 00m00s [ 84/163] Installing gnutls-0:3.8.9-5.f 100% | 263.8 MiB/s | 3.4 MiB | 00m00s [ 85/163] Installing libxml2-0:2.12.10- 100% | 78.8 MiB/s | 1.9 MiB | 00m00s [ 86/163] Installing bzip2-0:1.0.8-20.f 100% | 9.0 MiB/s | 175.8 KiB | 00m00s [ 87/163] Installing add-determinism-0: 100% | 86.6 MiB/s | 2.2 MiB | 00m00s [ 88/163] Installing build-reproducibil 100% | 1.0 MiB/s | 1.0 KiB | 00m00s [ 89/163] Installing cpio-0:2.15-2.fc41 100% | 50.9 MiB/s | 1.2 MiB | 00m00s [ 90/163] Installing diffutils-0:3.12-1 100% | 64.9 MiB/s | 1.6 MiB | 00m00s [ 91/163] Installing ed-0:1.21-2.fc42.a 100% | 8.1 MiB/s | 156.8 KiB | 00m00s [ 92/163] Installing patch-0:2.8-1.fc43 100% | 14.3 MiB/s | 264.1 KiB | 00m00s [ 93/163] Installing jansson-0:2.14-2.f 100% | 92.3 MiB/s | 94.5 KiB | 00m00s [ 94/163] Installing libgomp-0:15.1.1-1 100% | 251.7 MiB/s | 515.4 KiB | 00m00s [ 95/163] Installing libpkgconf-0:2.3.0 100% | 132.0 MiB/s | 135.1 KiB | 00m00s [ 96/163] Installing pkgconf-0:2.3.0-2. 100% | 6.2 MiB/s | 114.9 KiB | 00m00s [ 97/163] Installing pkgconf-pkg-config 100% | 98.5 KiB/s | 1.8 KiB | 00m00s [ 98/163] Installing npth-0:1.8-2.fc42. 100% | 92.4 MiB/s | 94.6 KiB | 00m00s [ 99/163] Installing libtool-ltdl-0:2.5 100% | 92.9 MiB/s | 95.1 KiB | 00m00s [100/163] Installing gdbm-libs-1:1.23-9 100% | 115.1 MiB/s | 235.7 KiB | 00m00s [101/163] Installing cyrus-sasl-lib-0:2 100% | 93.0 MiB/s | 2.4 MiB | 00m00s [102/163] Installing xxhash-libs-0:0.8. 100% | 85.3 MiB/s | 87.4 KiB | 00m00s [103/163] Installing libbrotli-0:1.1.0- 100% | 222.6 MiB/s | 911.7 KiB | 00m00s [104/163] Installing libnghttp2-0:1.65. 100% | 194.4 MiB/s | 199.0 KiB | 00m00s [105/163] Installing keyutils-libs-0:1. 100% | 97.4 MiB/s | 99.8 KiB | 00m00s [106/163] Installing libcom_err-0:1.47. 100% | 109.5 MiB/s | 112.2 KiB | 00m00s [107/163] Installing libverto-0:0.3.2-1 100% | 69.5 MiB/s | 71.2 KiB | 00m00s [108/163] Installing filesystem-srpm-ma 100% | 38.0 MiB/s | 38.9 KiB | 00m00s [109/163] Installing elfutils-default-y 100% | 340.5 KiB/s | 2.0 KiB | 00m00s [110/163] Installing elfutils-libs-0:0. 100% | 182.7 MiB/s | 748.2 KiB | 00m00s [111/163] Installing rust-srpm-macros-0 100% | 5.4 MiB/s | 5.6 KiB | 00m00s [112/163] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 740.0 B | 00m00s [113/163] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [114/163] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [115/163] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [116/163] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [117/163] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [118/163] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [119/163] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [120/163] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [121/163] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [122/163] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [123/163] Installing coreutils-common-0 100% | 262.6 MiB/s | 11.3 MiB | 00m00s [124/163] Installing openssl-libs-1:3.5 100% | 283.0 MiB/s | 7.4 MiB | 00m00s [125/163] Installing coreutils-0:9.7-1. 100% | 157.0 MiB/s | 8.2 MiB | 00m00s [126/163] Installing ca-certificates-0: 100% | 1.4 MiB/s | 2.4 MiB | 00m02s [127/163] Installing libarchive-0:3.7.7 100% | 178.2 MiB/s | 912.6 KiB | 00m00s [128/163] Installing krb5-libs-0:1.21.3 100% | 126.6 MiB/s | 2.5 MiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-7.fc43.aarch64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-7.fc43.aarch64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [129/163] Installing tpm2-tss-0:4.1.3-7 100% | 215.9 MiB/s | 2.2 MiB | 00m00s [130/163] Installing ima-evm-utils-libs 100% | 91.8 MiB/s | 94.0 KiB | 00m00s [131/163] Installing libssh-0:0.11.1-4. 100% | 191.2 MiB/s | 587.5 KiB | 00m00s [132/163] Installing gzip-0:1.13-3.fc42 100% | 19.1 MiB/s | 430.2 KiB | 00m00s [133/163] Installing rpm-sequoia-0:1.8. 100% | 262.6 MiB/s | 2.4 MiB | 00m00s [134/163] Installing rpm-libs-0:5.99.90 100% | 243.4 MiB/s | 996.9 KiB | 00m00s [135/163] Installing libfsverity-0:1.6- 100% | 67.8 MiB/s | 69.4 KiB | 00m00s [136/163] Installing libevent-0:2.1.12- 100% | 217.0 MiB/s | 1.1 MiB | 00m00s [137/163] Installing openldap-0:2.6.9-5 100% | 171.2 MiB/s | 701.2 KiB | 00m00s [138/163] Installing libcurl-0:8.13.0-1 100% | 209.9 MiB/s | 859.6 KiB | 00m00s [139/163] Installing elfutils-debuginfo 100% | 7.1 MiB/s | 146.2 KiB | 00m00s [140/163] Installing binutils-0:2.44-3. 100% | 248.9 MiB/s | 29.4 MiB | 00m00s [141/163] Installing elfutils-0:0.192-8 100% | 108.3 MiB/s | 3.1 MiB | 00m00s [142/163] Installing gdb-minimal-0:16.3 100% | 209.4 MiB/s | 13.0 MiB | 00m00s [143/163] Installing debugedit-0:5.1-6. 100% | 12.7 MiB/s | 247.3 KiB | 00m00s [144/163] Installing curl-0:8.13.0-1.fc 100% | 15.5 MiB/s | 459.5 KiB | 00m00s [145/163] Installing rpm-0:5.99.90-4.fc 100% | 55.0 MiB/s | 2.8 MiB | 00m00s [146/163] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.1 KiB | 00m00s [147/163] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s [148/163] Installing tree-sitter-srpm-m 100% | 8.4 MiB/s | 8.6 KiB | 00m00s [149/163] Installing zig-srpm-macros-0: 100% | 1.6 MiB/s | 1.7 KiB | 00m00s [150/163] Installing gnupg2-0:2.4.7-3.f 100% | 173.5 MiB/s | 10.4 MiB | 00m00s [151/163] Installing rpm-sign-libs-0:5. 100% | 67.0 MiB/s | 68.6 KiB | 00m00s [152/163] Installing rpm-build-libs-0:5 100% | 129.4 MiB/s | 264.9 KiB | 00m00s [153/163] Installing rpm-build-0:5.99.9 100% | 28.0 MiB/s | 601.9 KiB | 00m00s [154/163] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [155/163] Installing redhat-rpm-config- 100% | 62.6 MiB/s | 192.3 KiB | 00m00s [156/163] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [157/163] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [158/163] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [159/163] Installing python-srpm-macros 100% | 25.9 MiB/s | 53.0 KiB | 00m00s [160/163] Installing util-linux-0:2.40. 100% | 120.5 MiB/s | 6.6 MiB | 00m00s [161/163] Installing which-0:2.23-1.fc4 100% | 5.8 MiB/s | 125.6 KiB | 00m00s [162/163] Installing shadow-utils-2:4.1 100% | 95.5 MiB/s | 4.6 MiB | 00m00s [163/163] Installing info-0:7.2-3.fc42. 100% | 191.9 KiB/s | 422.0 KiB | 00m02s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.6.0-1.fc43.aarch64 alternatives-1.32-1.fc43.aarch64 ansible-srpm-macros-1-17.1.fc42.noarch audit-libs-4.0.3-2.fc42.aarch64 bash-5.2.37-3.fc43.aarch64 binutils-2.44-3.fc43.aarch64 build-reproducibility-srpm-macros-0.6.0-1.fc43.noarch bzip2-1.0.8-20.fc42.aarch64 bzip2-libs-1.0.8-20.fc42.aarch64 ca-certificates-2024.2.69_v8.0.401-5.fc42.noarch coreutils-9.7-1.fc43.aarch64 coreutils-common-9.7-1.fc43.aarch64 cpio-2.15-2.fc41.aarch64 crypto-policies-20250402-2.git86c0178.fc43.noarch curl-8.13.0-1.fc43.aarch64 cyrus-sasl-lib-2.1.28-30.fc42.aarch64 debugedit-5.1-6.fc43.aarch64 diffutils-3.12-1.fc43.aarch64 dwz-0.15-9.fc42.aarch64 ed-1.21-2.fc42.aarch64 efi-srpm-macros-6-3.fc43.noarch elfutils-0.192-8.fc42.aarch64 elfutils-debuginfod-client-0.192-8.fc42.aarch64 elfutils-default-yama-scope-0.192-8.fc42.noarch elfutils-libelf-0.192-8.fc42.aarch64 elfutils-libs-0.192-8.fc42.aarch64 fedora-gpg-keys-43-0.2.noarch fedora-release-43-0.15.noarch fedora-release-common-43-0.15.noarch fedora-release-identity-basic-43-0.15.noarch fedora-repos-43-0.2.noarch fedora-repos-rawhide-43-0.2.noarch file-5.46-1.fc42.aarch64 file-libs-5.46-1.fc42.aarch64 filesystem-3.18-40.fc43.aarch64 filesystem-srpm-macros-3.18-40.fc43.noarch findutils-4.10.0-5.fc42.aarch64 fonts-srpm-macros-2.0.5-21.fc42.noarch forge-srpm-macros-0.4.0-2.fc42.noarch fpc-srpm-macros-1.3-14.fc42.noarch gawk-5.3.2-1.fc43.aarch64 gdb-minimal-16.3-1.fc43.aarch64 gdbm-libs-1.23-9.fc42.aarch64 ghc-srpm-macros-1.9.2-2.fc42.noarch glibc-2.41.9000-11.fc43.aarch64 glibc-common-2.41.9000-11.fc43.aarch64 glibc-gconv-extra-2.41.9000-11.fc43.aarch64 glibc-minimal-langpack-2.41.9000-11.fc43.aarch64 gmp-6.3.0-3.fc43.aarch64 gnat-srpm-macros-6-7.fc42.noarch gnupg2-2.4.7-3.fc43.aarch64 gnutls-3.8.9-5.fc43.aarch64 go-srpm-macros-3.6.0-7.fc43.noarch gpg-pubkey-36f612dcf27f7d1a48a835e4dbfcf71c6d9f90a6-6786af3b gpg-pubkey-b0f4950458f69e1150c6c5edc8ac4916105ef944-65ca83d1 gpg-pubkey-c6e7f081cf80e13146676e88829b606631645531-66b6dccf grep-3.12-1.fc43.aarch64 gzip-1.13-3.fc42.aarch64 ima-evm-utils-libs-1.6.2-5.fc43.aarch64 info-7.2-3.fc42.aarch64 jansson-2.14-2.fc42.aarch64 json-c-0.18-2.fc42.aarch64 kernel-srpm-macros-1.0-25.fc42.noarch keyutils-libs-1.6.3-5.fc42.aarch64 krb5-libs-1.21.3-5.fc42.aarch64 libacl-2.3.2-3.fc42.aarch64 libarchive-3.7.7-4.fc43.aarch64 libassuan-2.5.7-3.fc42.aarch64 libattr-2.5.2-5.fc42.aarch64 libblkid-2.40.4-7.fc43.aarch64 libbrotli-1.1.0-6.fc42.aarch64 libcap-2.76-1.fc43.aarch64 libcap-ng-0.8.5-4.fc42.aarch64 libcom_err-1.47.2-3.fc42.aarch64 libcurl-8.13.0-1.fc43.aarch64 libeconf-0.7.6-1.fc43.aarch64 libevent-2.1.12-15.fc42.aarch64 libfdisk-2.40.4-7.fc43.aarch64 libffi-3.4.7-4.fc43.aarch64 libfsverity-1.6-2.fc42.aarch64 libgcc-15.1.1-1.fc43.aarch64 libgcrypt-1.11.0-5.fc42.aarch64 libgomp-15.1.1-1.fc43.aarch64 libgpg-error-1.55-1.fc43.aarch64 libidn2-2.3.8-1.fc43.aarch64 libksba-1.6.7-3.fc42.aarch64 libmount-2.40.4-7.fc43.aarch64 libnghttp2-1.65.0-1.fc43.aarch64 libpkgconf-2.3.0-2.fc42.aarch64 libpsl-0.21.5-5.fc42.aarch64 libselinux-3.8-1.fc42.aarch64 libsemanage-3.8-1.fc42.aarch64 libsepol-3.8-1.fc42.aarch64 libsmartcols-2.40.4-7.fc43.aarch64 libssh-0.11.1-4.fc42.aarch64 libssh-config-0.11.1-4.fc42.noarch libstdc++-15.1.1-1.fc43.aarch64 libtasn1-4.20.0-1.fc43.aarch64 libtool-ltdl-2.5.4-4.fc42.aarch64 libunistring-1.1-9.fc42.aarch64 libusb1-1.0.28-2.fc43.aarch64 libuuid-2.40.4-7.fc43.aarch64 libverto-0.3.2-10.fc42.aarch64 libxcrypt-4.4.38-7.fc43.aarch64 libxml2-2.12.10-1.fc43.aarch64 libzstd-1.5.7-1.fc43.aarch64 lua-libs-5.4.7-3.fc43.aarch64 lua-srpm-macros-1-15.fc42.noarch lz4-libs-1.10.0-2.fc42.aarch64 mpfr-4.2.2-1.fc43.aarch64 ncurses-base-6.5-5.20250125.fc42.noarch ncurses-libs-6.5-5.20250125.fc42.aarch64 nettle-3.10.1-1.fc43.aarch64 npth-1.8-2.fc42.aarch64 ocaml-srpm-macros-10-4.fc42.noarch openblas-srpm-macros-2-19.fc42.noarch openldap-2.6.9-5.fc43.aarch64 openssl-libs-3.5.0-3.fc43.aarch64 p11-kit-0.25.5-5.fc42.aarch64 p11-kit-trust-0.25.5-5.fc42.aarch64 package-notes-srpm-macros-0.5-13.fc42.noarch pam-libs-1.7.0-4.fc42.aarch64 patch-2.8-1.fc43.aarch64 pcre2-10.45-1.fc43.aarch64 pcre2-syntax-10.45-1.fc43.noarch perl-srpm-macros-1-57.fc42.noarch pkgconf-2.3.0-2.fc42.aarch64 pkgconf-m4-2.3.0-2.fc42.noarch pkgconf-pkg-config-2.3.0-2.fc42.aarch64 popt-1.19-8.fc42.aarch64 publicsuffix-list-dafsa-20250116-1.fc42.noarch pyproject-srpm-macros-1.18.1-1.fc43.noarch python-srpm-macros-3.13-5.fc43.noarch qt5-srpm-macros-5.15.16-1.fc43.noarch qt6-srpm-macros-6.9.0-2.fc43.noarch readline-8.2-13.fc43.aarch64 redhat-rpm-config-343-4.fc43.noarch rpm-5.99.90-4.fc43.aarch64 rpm-build-5.99.90-4.fc43.aarch64 rpm-build-libs-5.99.90-4.fc43.aarch64 rpm-libs-5.99.90-4.fc43.aarch64 rpm-sequoia-1.8.0-1.fc43.aarch64 rpm-sign-libs-5.99.90-4.fc43.aarch64 rust-srpm-macros-26.3-4.fc42.noarch sed-4.9-4.fc42.aarch64 setup-2.15.0-23.fc43.noarch shadow-utils-4.17.4-1.fc43.aarch64 sqlite-libs-3.49.0-1.fc43.aarch64 systemd-libs-257.5-2.fc43.aarch64 systemd-standalone-sysusers-257.5-2.fc43.aarch64 tar-1.35-5.fc42.aarch64 tpm2-tss-4.1.3-7.fc43.aarch64 tree-sitter-srpm-macros-0.2.4-1.fc43.noarch unzip-6.0-66.fc42.aarch64 util-linux-2.40.4-7.fc43.aarch64 util-linux-core-2.40.4-7.fc43.aarch64 which-2.23-1.fc42.aarch64 xxhash-libs-0.8.3-2.fc42.aarch64 xz-5.8.1-1.fc43.aarch64 xz-libs-5.8.1-1.fc43.aarch64 zig-srpm-macros-1-4.fc42.noarch zip-3.0-43.fc42.aarch64 zlib-ng-compat-2.2.4-2.fc43.aarch64 zstd-1.5.7-1.fc43.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1737244800 Wrote: /builddir/build/SRPMS/smoldyn-2.72-7.fc43.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1746023660.880630/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-1mgu9cd_/smoldyn/smoldyn.spec) Config(child) 0 minutes 23 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/smoldyn-2.72-7.fc43.src.rpm) Config(fedora-rawhide-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1746023660.880630/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1746023660.880630/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1746023660.880630/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-5.99.90-4.fc43.aarch64 rpm-sequoia-1.8.0-1.fc43.aarch64 dnf5-5.2.13.1-1.fc43.aarch64 dnf5-plugins-5.2.13.1-1.fc43.aarch64 Finish: chroot init Start: build phase for smoldyn-2.72-7.fc43.src.rpm Start: build setup for smoldyn-2.72-7.fc43.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1737244800 Wrote: /builddir/build/SRPMS/smoldyn-2.72-7.fc43.src.rpm Updating and loading repositories: fedora 100% | 83.3 KiB/s | 14.6 KiB | 00m00s Copr repository 100% | 76.3 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: boost-devel aarch64 1.83.0-12.fc42 fedora 143.0 MiB cmake aarch64 3.31.6-2.fc43 fedora 29.5 MiB freeglut-devel aarch64 3.6.0-4.fc42 fedora 2.3 MiB gcc aarch64 15.1.1-1.fc43 fedora 99.0 MiB gcc-c++ aarch64 15.1.1-1.fc43 fedora 38.8 MiB libXi-devel aarch64 1.8.2-2.fc42 fedora 132.5 KiB libXmu-devel aarch64 1.2.1-3.fc42 fedora 66.2 KiB libglvnd-devel aarch64 1:1.7.0-7.fc42 fedora 2.1 MiB libtiff-devel aarch64 4.7.0-3.fc42 fedora 761.6 KiB make aarch64 1:4.4.1-10.fc42 fedora 1.8 MiB perl-macros noarch 4:5.40.2-517.fc43 fedora 5.5 KiB pybind11-devel aarch64 2.13.6-5.fc43 copr_base 847.0 KiB python3-devel aarch64 3.13.3-2.fc43 fedora 1.8 MiB python3-flaky noarch 3.8.1-6.fc42 fedora 129.0 KiB python3-matplotlib aarch64 3.10.0-3.fc42 fedora 22.3 MiB python3-setuptools noarch 78.1.1-1.fc43 fedora 8.6 MiB python3-wheel noarch 1:0.45.1-6.fc43 fedora 541.9 KiB xorg-x11-server-Xvfb aarch64 21.1.16-1.fc43 fedora 1.8 MiB zlib-ng-compat-devel aarch64 2.2.4-2.fc43 fedora 107.0 KiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-14.fc42 fedora 192.7 KiB annobin-docs noarch 12.93-1.fc43 fedora 98.9 KiB annobin-plugin-gcc aarch64 12.93-1.fc43 fedora 1.0 MiB boost aarch64 1.83.0-12.fc42 fedora 1.3 KiB boost-atomic aarch64 1.83.0-12.fc42 fedora 68.8 KiB boost-chrono aarch64 1.83.0-12.fc42 fedora 69.4 KiB boost-container aarch64 1.83.0-12.fc42 fedora 69.4 KiB boost-context aarch64 1.83.0-12.fc42 fedora 68.3 KiB boost-contract aarch64 1.83.0-12.fc42 fedora 134.6 KiB boost-coroutine aarch64 1.83.0-12.fc42 fedora 69.1 KiB boost-date-time aarch64 1.83.0-12.fc42 fedora 68.2 KiB boost-fiber aarch64 1.83.0-12.fc42 fedora 134.4 KiB boost-filesystem aarch64 1.83.0-12.fc42 fedora 134.8 KiB boost-graph aarch64 1.83.0-12.fc42 fedora 333.7 KiB boost-iostreams aarch64 1.83.0-12.fc42 fedora 134.2 KiB boost-json aarch64 1.83.0-12.fc42 fedora 328.3 KiB boost-locale aarch64 1.83.0-12.fc42 fedora 594.8 KiB boost-log aarch64 1.83.0-12.fc42 fedora 1.4 MiB boost-math aarch64 1.83.0-12.fc42 fedora 863.4 KiB boost-nowide aarch64 1.83.0-12.fc42 fedora 68.9 KiB boost-numpy3 aarch64 1.83.0-12.fc42 fedora 69.4 KiB boost-program-options aarch64 1.83.0-12.fc42 fedora 267.4 KiB boost-python3 aarch64 1.83.0-12.fc42 fedora 268.6 KiB boost-random aarch64 1.83.0-12.fc42 fedora 69.5 KiB boost-regex aarch64 1.83.0-12.fc42 fedora 266.4 KiB boost-serialization aarch64 1.83.0-12.fc42 fedora 467.3 KiB boost-stacktrace aarch64 1.83.0-12.fc42 fedora 203.7 KiB boost-system aarch64 1.83.0-12.fc42 fedora 68.2 KiB boost-test aarch64 1.83.0-12.fc42 fedora 664.1 KiB boost-thread aarch64 1.83.0-12.fc42 fedora 136.3 KiB boost-timer aarch64 1.83.0-12.fc42 fedora 69.0 KiB boost-type_erasure aarch64 1.83.0-12.fc42 fedora 70.0 KiB boost-wave aarch64 1.83.0-12.fc42 fedora 854.2 KiB cairo aarch64 1.18.2-3.fc42 fedora 1.8 MiB cmake-data noarch 3.31.6-2.fc43 fedora 8.5 MiB cmake-filesystem aarch64 3.31.6-2.fc43 fedora 0.0 B cmake-rpm-macros noarch 3.31.6-2.fc43 fedora 7.7 KiB cpp aarch64 15.1.1-1.fc43 fedora 35.4 MiB default-fonts-core-sans noarch 4.2-4.fc42 fedora 11.9 KiB dejavu-sans-fonts noarch 2.37-25.fc42 fedora 5.5 MiB emacs-filesystem noarch 1:30.0-4.fc42 fedora 0.0 B expat aarch64 2.7.1-1.fc43 fedora 354.1 KiB flexiblas aarch64 3.4.5-1.fc43 fedora 50.4 KiB flexiblas-netlib aarch64 3.4.5-1.fc43 fedora 9.3 MiB flexiblas-openblas-openmp aarch64 3.4.5-1.fc43 fedora 67.3 KiB fontconfig aarch64 2.16.2-1.fc43 fedora 1.2 MiB fonts-filesystem noarch 1:2.0.5-21.fc42 fedora 0.0 B freeglut aarch64 3.6.0-4.fc42 fedora 523.4 KiB freetype aarch64 2.13.3-2.fc42 fedora 814.5 KiB fribidi aarch64 1.0.16-2.fc42 fedora 246.3 KiB gcc-plugin-annobin aarch64 15.1.1-1.fc43 fedora 69.2 KiB glib2 aarch64 2.84.1-1.fc43 fedora 15.3 MiB glibc-devel aarch64 2.41.9000-11.fc43 fedora 2.2 MiB google-noto-fonts-common noarch 20250401-1.fc43 fedora 17.7 KiB google-noto-sans-vf-fonts noarch 20250401-1.fc43 fedora 1.4 MiB graphite2 aarch64 1.3.14-18.fc42 fedora 239.6 KiB groff-base aarch64 1.23.0-8.fc42 fedora 4.2 MiB harfbuzz aarch64 11.2.0-1.fc43 fedora 2.6 MiB hwdata noarch 0.394-1.fc43 fedora 9.5 MiB jbigkit-libs aarch64 2.1-31.fc42 fedora 181.5 KiB jsoncpp aarch64 1.9.6-1.fc43 fedora 271.8 KiB kernel-headers aarch64 6.15.0-0.rc2.22.fc43 fedora 6.5 MiB lcms2 aarch64 2.16-5.fc42 fedora 420.7 KiB libICE aarch64 1.1.2-2.fc42 fedora 222.4 KiB libICE-devel aarch64 1.1.2-2.fc42 fedora 261.8 KiB libSM aarch64 1.2.5-2.fc42 fedora 129.1 KiB libSM-devel aarch64 1.2.5-2.fc42 fedora 18.8 KiB libX11 aarch64 1.8.11-1.fc42 fedora 1.3 MiB libX11-common noarch 1.8.11-1.fc42 fedora 1.2 MiB libX11-devel aarch64 1.8.11-1.fc42 fedora 1.0 MiB libX11-xcb aarch64 1.8.11-1.fc42 fedora 67.0 KiB libXau aarch64 1.0.12-2.fc42 fedora 121.0 KiB libXau-devel aarch64 1.0.12-2.fc42 fedora 7.5 KiB libXdmcp aarch64 1.1.5-3.fc42 fedora 122.3 KiB libXext aarch64 1.3.6-3.fc42 fedora 145.9 KiB libXext-devel aarch64 1.3.6-3.fc42 fedora 98.9 KiB libXfixes aarch64 6.0.1-5.fc42 fedora 70.2 KiB libXfixes-devel aarch64 6.0.1-5.fc42 fedora 9.2 KiB libXfont2 aarch64 2.0.7-2.fc42 fedora 358.4 KiB libXi aarch64 1.8.2-2.fc42 fedora 72.5 KiB libXmu aarch64 1.2.1-3.fc42 fedora 263.4 KiB libXrender aarch64 0.9.12-2.fc42 fedora 70.0 KiB libXt aarch64 1.3.1-2.fc42 fedora 477.5 KiB libXt-devel aarch64 1.3.1-2.fc42 fedora 1.6 MiB libXxf86vm aarch64 1.1.6-2.fc42 fedora 69.2 KiB libasan aarch64 15.1.1-1.fc43 fedora 1.5 MiB libatomic aarch64 15.1.1-1.fc43 fedora 68.8 KiB libb2 aarch64 0.98.1-13.fc42 fedora 74.1 KiB libdrm aarch64 2.4.124-2.fc42 fedora 759.5 KiB libdrm-devel aarch64 2.4.124-2.fc42 fedora 755.9 KiB libedit aarch64 3.1-55.20250104cvs.fc42 fedora 280.1 KiB libfontenc aarch64 1.1.8-3.fc42 fedora 106.7 KiB libgfortran aarch64 15.1.1-1.fc43 fedora 1.6 MiB libglvnd aarch64 1:1.7.0-7.fc42 fedora 1.3 MiB libglvnd-core-devel aarch64 1:1.7.0-7.fc42 fedora 40.3 KiB libglvnd-egl aarch64 1:1.7.0-7.fc42 fedora 68.8 KiB libglvnd-gles aarch64 1:1.7.0-7.fc42 fedora 394.2 KiB libglvnd-glx aarch64 1:1.7.0-7.fc42 fedora 1.0 MiB libglvnd-opengl aarch64 1:1.7.0-7.fc42 fedora 329.1 KiB libicu aarch64 76.1-4.fc42 fedora 36.5 MiB libicu-devel aarch64 76.1-4.fc42 fedora 5.1 MiB libimagequant aarch64 4.0.3-7.fc42 fedora 668.7 KiB libjpeg-turbo aarch64 3.1.0-2.fc42 fedora 738.6 KiB libjpeg-turbo-devel aarch64 3.1.0-2.fc42 fedora 353.9 KiB liblerc aarch64 4.0.0-8.fc42 fedora 546.5 KiB liblerc-devel aarch64 4.0.0-8.fc42 fedora 4.3 MiB libmpc aarch64 1.3.1-7.fc42 fedora 152.7 KiB libpciaccess aarch64 0.16-15.fc42 fedora 72.5 KiB libpciaccess-devel aarch64 0.16-15.fc42 fedora 15.3 KiB libpng aarch64 2:1.6.47-1.fc43 fedora 269.8 KiB libqhull_r aarch64 1:8.0.2-6.fc42 fedora 455.4 KiB libraqm aarch64 0.10.1-2.fc42 fedora 68.7 KiB libstdc++-devel aarch64 15.1.1-1.fc43 fedora 15.7 MiB libtiff aarch64 4.7.0-3.fc42 fedora 658.0 KiB libubsan aarch64 15.1.1-1.fc43 fedora 475.6 KiB libunwind aarch64 1.8.1-2.fc43 fedora 351.7 KiB libuuid-devel aarch64 2.40.4-7.fc43 fedora 40.9 KiB libuv aarch64 1:1.51.0-1.fc43 fedora 605.4 KiB libwayland-client aarch64 1.23.1-1.fc43 fedora 70.1 KiB libwayland-server aarch64 1.23.1-1.fc43 fedora 134.6 KiB libwebp aarch64 1.5.0-2.fc42 fedora 817.0 KiB libwebp-devel aarch64 1.5.0-2.fc42 fedora 121.2 KiB libxcb aarch64 1.17.0-5.fc42 fedora 2.2 MiB libxcb-devel aarch64 1.17.0-5.fc42 fedora 2.7 MiB libxcrypt-devel aarch64 4.4.38-7.fc43 fedora 30.8 KiB libxkbfile aarch64 1.1.3-3.fc42 fedora 241.9 KiB libxshmfence aarch64 1.3.2-6.fc42 fedora 68.5 KiB libzstd-devel aarch64 1.5.7-1.fc43 fedora 208.0 KiB llvm-filesystem aarch64 20.1.3-1.fc43 fedora 0.0 B llvm-libs aarch64 20.1.3-1.fc43 fedora 127.6 MiB lm_sensors-libs aarch64 3.6.0-22.fc42 fedora 93.8 KiB mesa-dri-drivers aarch64 25.1.0~rc2-3.fc43 fedora 111.5 MiB mesa-filesystem aarch64 25.1.0~rc2-3.fc43 fedora 3.6 KiB mesa-libEGL aarch64 25.1.0~rc2-3.fc43 fedora 394.9 KiB mesa-libGL aarch64 25.1.0~rc2-3.fc43 fedora 398.2 KiB mesa-libGL-devel aarch64 25.1.0~rc2-3.fc43 fedora 80.8 KiB mesa-libGLU aarch64 9.0.3-6.fc42 fedora 329.5 KiB mesa-libGLU-devel aarch64 9.0.3-6.fc42 fedora 17.0 KiB mesa-libgbm aarch64 25.1.0~rc2-3.fc43 fedora 67.8 KiB mpdecimal aarch64 4.0.0-2.fc43 fedora 280.8 KiB ncurses aarch64 6.5-5.20250125.fc42 fedora 891.9 KiB openblas aarch64 0.3.29-1.fc42 fedora 111.7 KiB openblas-openmp aarch64 0.3.29-1.fc42 fedora 20.4 MiB openjpeg aarch64 2.5.3-6.fc42 fedora 411.8 KiB perl-AutoLoader noarch 5.74-517.fc43 fedora 20.5 KiB perl-B aarch64 1.89-517.fc43 fedora 542.0 KiB perl-Carp noarch 1.54-512.fc42 fedora 46.6 KiB perl-Class-Struct noarch 0.68-517.fc43 fedora 25.4 KiB perl-Data-Dumper aarch64 2.189-513.fc42 fedora 135.6 KiB perl-Digest noarch 1.20-512.fc42 fedora 35.3 KiB perl-Digest-MD5 aarch64 2.59-6.fc42 fedora 103.7 KiB perl-DynaLoader aarch64 1.56-517.fc43 fedora 32.1 KiB perl-Encode aarch64 4:3.21-512.fc42 fedora 4.8 MiB perl-Errno aarch64 1.38-517.fc43 fedora 8.3 KiB perl-Exporter noarch 5.78-512.fc42 fedora 54.3 KiB perl-Fcntl aarch64 1.18-517.fc43 fedora 92.9 KiB perl-File-Basename noarch 2.86-517.fc43 fedora 14.0 KiB perl-File-Path noarch 2.18-512.fc42 fedora 63.5 KiB perl-File-Temp noarch 1:0.231.100-512.fc42 fedora 162.3 KiB perl-File-stat noarch 1.14-517.fc43 fedora 12.5 KiB perl-FileHandle noarch 2.05-517.fc43 fedora 9.3 KiB perl-Getopt-Long noarch 1:2.58-3.fc42 fedora 144.5 KiB perl-Getopt-Std noarch 1.14-517.fc43 fedora 11.2 KiB perl-HTTP-Tiny noarch 0.090-2.fc42 fedora 154.4 KiB perl-IO aarch64 1.55-517.fc43 fedora 191.0 KiB perl-IO-Socket-IP noarch 0.43-2.fc42 fedora 100.3 KiB perl-IO-Socket-SSL noarch 2.089-2.fc42 fedora 703.3 KiB perl-IPC-Open3 noarch 1.22-517.fc43 fedora 22.5 KiB perl-MIME-Base32 noarch 1.303-23.fc42 fedora 30.7 KiB perl-MIME-Base64 aarch64 3.16-512.fc42 fedora 94.1 KiB perl-Net-SSLeay aarch64 1.94-9.fc43 fedora 1.4 MiB perl-POSIX aarch64 2.20-517.fc43 fedora 263.1 KiB perl-PathTools aarch64 3.91-513.fc42 fedora 224.0 KiB perl-Pod-Escapes noarch 1:1.07-512.fc42 fedora 24.9 KiB perl-Pod-Perldoc noarch 3.28.01-513.fc42 fedora 163.7 KiB perl-Pod-Simple noarch 1:3.45-512.fc42 fedora 560.8 KiB perl-Pod-Usage noarch 4:2.05-1.fc43 fedora 86.3 KiB perl-Scalar-List-Utils aarch64 5:1.69-1.fc43 fedora 152.8 KiB perl-SelectSaver noarch 1.02-517.fc43 fedora 2.2 KiB perl-Socket aarch64 4:2.038-512.fc42 fedora 144.0 KiB perl-Storable aarch64 1:3.32-512.fc42 fedora 244.3 KiB perl-Symbol noarch 1.09-517.fc43 fedora 6.8 KiB perl-Term-ANSIColor noarch 5.01-513.fc42 fedora 97.5 KiB perl-Term-Cap noarch 1.18-512.fc42 fedora 29.3 KiB perl-Text-ParseWords noarch 3.31-512.fc42 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 2024.001-512.fc42 fedora 22.6 KiB perl-Time-Local noarch 2:1.350-512.fc42 fedora 68.9 KiB perl-URI noarch 5.31-2.fc42 fedora 257.0 KiB perl-base noarch 2.27-517.fc43 fedora 12.5 KiB perl-constant noarch 1.33-513.fc42 fedora 26.2 KiB perl-if noarch 0.61.000-517.fc43 fedora 5.8 KiB perl-interpreter aarch64 4:5.40.2-517.fc43 fedora 174.2 KiB perl-libnet noarch 3.15-513.fc42 fedora 289.4 KiB perl-libs aarch64 4:5.40.2-517.fc43 fedora 9.9 MiB perl-locale noarch 1.12-517.fc43 fedora 6.5 KiB perl-mro aarch64 1.29-517.fc43 fedora 81.6 KiB perl-overload noarch 1.37-517.fc43 fedora 71.5 KiB perl-overloading noarch 0.02-517.fc43 fedora 4.8 KiB perl-parent noarch 1:0.244-2.fc42 fedora 10.3 KiB perl-podlators noarch 1:6.0.2-3.fc42 fedora 317.5 KiB perl-vars noarch 1.05-517.fc43 fedora 3.9 KiB pixman aarch64 0.44.2-2.fc42 fedora 654.4 KiB pyproject-rpm-macros noarch 1.18.1-1.fc43 fedora 114.5 KiB python-pip-wheel noarch 25.1-1.fc43 fedora 1.2 MiB python-rpm-macros noarch 3.13-5.fc43 fedora 22.1 KiB python3 aarch64 3.13.3-2.fc43 fedora 84.7 KiB python3-cairo aarch64 1.25.1-6.fc42 fedora 520.4 KiB python3-contourpy aarch64 1.3.2-1.fc43 copr_base 844.4 KiB python3-cycler noarch 0.11.0-15.fc42 fedora 37.2 KiB python3-dateutil noarch 1:2.8.2-17.fc42 fedora 876.2 KiB python3-fonttools aarch64 4.57.0-1.fc43 fedora 18.1 MiB python3-kiwisolver aarch64 1.4.8-2.fc42 fedora 161.1 KiB python3-libs aarch64 3.13.3-2.fc43 fedora 42.0 MiB python3-matplotlib-data noarch 3.10.0-3.fc42 fedora 742.7 KiB python3-matplotlib-data-fonts noarch 3.10.0-3.fc42 fedora 7.9 MiB python3-numpy aarch64 1:2.2.5-1.fc43 fedora 33.9 MiB python3-numpy-f2py aarch64 1:2.2.5-1.fc43 fedora 2.0 MiB python3-olefile noarch 0.47-6.fc42 fedora 339.5 KiB python3-packaging noarch 24.2-3.fc42 fedora 555.7 KiB python3-pillow aarch64 11.2.1-1.fc43 fedora 4.2 MiB python3-pyparsing noarch 3.1.2-8.fc42 fedora 996.4 KiB python3-rpm-generators noarch 14-12.fc42 fedora 81.7 KiB python3-rpm-macros noarch 3.13-5.fc43 fedora 6.4 KiB python3-six noarch 1.17.0-2.fc42 fedora 116.9 KiB rhash aarch64 1.4.5-2.fc42 fedora 394.8 KiB spirv-tools-libs aarch64 2025.1-1.fc43 fedora 5.4 MiB tzdata noarch 2025b-1.fc43 fedora 1.6 MiB vim-filesystem noarch 2:9.1.1291-1.fc43 fedora 40.0 B xkbcomp aarch64 1.4.7-3.fc42 fedora 208.9 KiB xkeyboard-config noarch 2.44-1.fc43 fedora 6.6 MiB xml-common noarch 0.6.3-66.fc42 fedora 78.4 KiB xorg-x11-proto-devel noarch 2024.1-4.fc42 fedora 1.7 MiB xorg-x11-server-common aarch64 21.1.16-1.fc43 fedora 127.1 KiB xorg-x11-xauth aarch64 1:1.1.4-1.fc43 fedora 76.0 KiB Transaction Summary: Installing: 253 packages Total size of inbound packages is 239 MiB. Need to download 239 MiB. After this operation, 975 MiB extra will be used (install 975 MiB, remove 0 B). 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| 12.2 MiB/s | 87.3 KiB | 00m00s [167/253] graphite2-0:1.3.14-18.fc42.aa 100% | 10.0 MiB/s | 91.8 KiB | 00m00s [168/253] fontconfig-0:2.16.2-1.fc43.aa 100% | 44.6 MiB/s | 274.0 KiB | 00m00s [169/253] glib2-0:2.84.1-1.fc43.aarch64 100% | 144.8 MiB/s | 3.0 MiB | 00m00s [170/253] libXrender-0:0.9.12-2.fc42.aa 100% | 5.3 MiB/s | 27.0 KiB | 00m00s [171/253] flexiblas-0:3.4.5-1.fc43.aarc 100% | 8.5 MiB/s | 26.2 KiB | 00m00s [172/253] flexiblas-openblas-openmp-0:3 100% | 5.4 MiB/s | 16.5 KiB | 00m00s [173/253] libgfortran-0:15.1.1-1.fc43.a 100% | 149.6 MiB/s | 459.6 KiB | 00m00s [174/253] fribidi-0:1.0.16-2.fc42.aarch 100% | 17.5 MiB/s | 53.8 KiB | 00m00s [175/253] libxkbfile-0:1.1.3-3.fc42.aar 100% | 43.8 MiB/s | 89.8 KiB | 00m00s [176/253] libpciaccess-0:0.16-15.fc42.a 100% | 8.5 MiB/s | 26.1 KiB | 00m00s [177/253] libxshmfence-0:1.3.2-6.fc42.a 100% | 6.6 MiB/s | 13.5 KiB | 00m00s [178/253] lm_sensors-libs-0:3.6.0-22.fc 100% | 13.2 MiB/s | 40.6 KiB | 00m00s [179/253] mesa-filesystem-0:25.1.0~rc2- 100% | 3.5 MiB/s | 21.5 KiB | 00m00s [180/253] spirv-tools-libs-0:2025.1-1.f 100% | 93.0 MiB/s | 1.4 MiB | 00m00s [181/253] perl-vars-0:1.05-517.fc43.noa 100% | 1.6 MiB/s | 13.2 KiB | 00m00s [182/253] perl-File-Basename-0:2.86-517 100% | 3.4 MiB/s | 17.4 KiB | 00m00s [183/253] perl-Getopt-Long-1:2.58-3.fc4 100% | 6.9 MiB/s | 63.7 KiB | 00m00s [184/253] mesa-dri-drivers-0:25.1.0~rc2 100% | 171.4 MiB/s | 23.0 MiB | 00m00s [185/253] perl-Getopt-Std-0:1.14-517.fc 100% | 612.3 KiB/s | 15.9 KiB | 00m00s [186/253] perl-MIME-Base64-0:3.16-512.f 100% | 2.7 MiB/s | 30.1 KiB | 00m00s [187/253] perl-Storable-1:3.32-512.fc42 100% | 7.2 MiB/s | 96.1 KiB | 00m00s [188/253] perl-constant-0:1.33-513.fc42 100% | 3.7 MiB/s | 23.0 KiB | 00m00s [189/253] perl-overload-0:1.37-517.fc43 100% | 8.9 MiB/s | 45.8 KiB | 00m00s [190/253] perl-parent-1:0.244-2.fc42.no 100% | 3.7 MiB/s | 15.2 KiB | 00m00s [191/253] perl-Errno-0:1.38-517.fc43.aa 100% | 3.0 MiB/s | 15.1 KiB | 00m00s [192/253] perl-Scalar-List-Utils-5:1.69 100% | 11.9 MiB/s | 73.1 KiB | 00m00s [193/253] default-fonts-core-sans-0:4.2 100% | 5.1 MiB/s | 31.3 KiB | 00m00s [194/253] xml-common-0:0.6.3-66.fc42.no 100% | 5.1 MiB/s | 31.2 KiB | 00m00s [195/253] llvm-libs-0:20.1.3-1.fc43.aar 100% | 207.8 MiB/s | 31.4 MiB | 00m00s [196/253] hwdata-0:0.394-1.fc43.noarch 100% | 39.1 MiB/s | 1.6 MiB | 00m00s [197/253] openblas-openmp-0:0.3.29-1.fc 100% | 77.2 MiB/s | 3.9 MiB | 00m00s [198/253] llvm-filesystem-0:20.1.3-1.fc 100% | 2.3 MiB/s | 14.2 KiB | 00m00s [199/253] libedit-0:3.1-55.20250104cvs. 100% | 10.2 MiB/s | 104.8 KiB | 00m00s [200/253] perl-Pod-Usage-4:2.05-1.fc43. 100% | 9.9 MiB/s | 40.6 KiB | 00m00s [201/253] perl-base-0:2.27-517.fc43.noa 100% | 5.4 MiB/s | 16.4 KiB | 00m00s [202/253] perl-Text-ParseWords-0:3.31-5 100% | 2.3 MiB/s | 16.5 KiB | 00m00s [203/253] perl-Fcntl-0:1.18-517.fc43.aa 100% | 7.3 MiB/s | 30.1 KiB | 00m00s [204/253] perl-IO-0:1.55-517.fc43.aarch 100% | 20.0 MiB/s | 82.1 KiB | 00m00s [205/253] perl-overloading-0:0.02-517.f 100% | 6.4 MiB/s | 13.1 KiB | 00m00s [206/253] perl-mro-0:1.29-517.fc43.aarc 100% | 9.7 MiB/s | 29.7 KiB | 00m00s [207/253] abattis-cantarell-vf-fonts-0: 100% | 39.1 MiB/s | 120.3 KiB | 00m00s [208/253] openblas-0:0.3.29-1.fc42.aarc 100% | 8.3 MiB/s | 42.3 KiB | 00m00s [209/253] google-noto-sans-vf-fonts-0:2 100% | 85.7 MiB/s | 614.5 KiB | 00m00s [210/253] perl-Pod-Perldoc-0:3.28.01-51 100% | 10.5 MiB/s | 85.8 KiB | 00m00s [211/253] perl-podlators-1:6.0.2-3.fc42 100% | 25.1 MiB/s | 128.6 KiB | 00m00s [212/253] perl-File-stat-0:1.14-517.fc4 100% | 3.4 MiB/s | 17.3 KiB | 00m00s [213/253] perl-SelectSaver-0:1.02-517.f 100% | 2.3 MiB/s | 12.0 KiB | 00m00s [214/253] perl-Symbol-0:1.09-517.fc43.n 100% | 3.5 MiB/s | 14.4 KiB | 00m00s [215/253] perl-Socket-4:2.038-512.fc42. 100% | 9.0 MiB/s | 55.1 KiB | 00m00s [216/253] google-noto-fonts-common-0:20 100% | 8.4 MiB/s | 17.2 KiB | 00m00s [217/253] perl-File-Temp-1:0.231.100-51 100% | 57.8 MiB/s | 59.2 KiB | 00m00s [218/253] perl-HTTP-Tiny-0:0.090-2.fc42 100% | 27.6 MiB/s | 56.5 KiB | 00m00s [219/253] groff-base-0:1.23.0-8.fc42.aa 100% | 178.6 MiB/s | 1.1 MiB | 00m00s [220/253] perl-IPC-Open3-0:1.22-517.fc4 100% | 5.4 MiB/s | 22.1 KiB | 00m00s [221/253] perl-Pod-Simple-1:3.45-512.fc 100% | 71.3 MiB/s | 219.0 KiB | 00m00s [222/253] perl-Term-ANSIColor-0:5.01-51 100% | 9.3 MiB/s | 47.7 KiB | 00m00s [223/253] perl-Term-Cap-0:1.18-512.fc42 100% | 4.3 MiB/s | 22.2 KiB | 00m00s [224/253] perl-POSIX-0:2.20-517.fc43.aa 100% | 15.9 MiB/s | 97.7 KiB | 00m00s [225/253] perl-Class-Struct-0:0.68-517. 100% | 10.9 MiB/s | 22.3 KiB | 00m00s [226/253] perl-File-Path-0:2.18-512.fc4 100% | 11.5 MiB/s | 35.2 KiB | 00m00s [227/253] perl-IO-Socket-SSL-0:2.089-2. 100% | 56.2 MiB/s | 230.2 KiB | 00m00s [228/253] perl-Net-SSLeay-0:1.94-9.fc43 100% | 92.1 MiB/s | 377.2 KiB | 00m00s [229/253] perl-Time-Local-2:1.350-512.f 100% | 11.2 MiB/s | 34.5 KiB | 00m00s [230/253] perl-Pod-Escapes-1:1.07-512.f 100% | 9.7 MiB/s | 19.8 KiB | 00m00s [231/253] perl-Text-Tabs+Wrap-0:2024.00 100% | 21.3 MiB/s | 21.8 KiB | 00m00s [232/253] perl-locale-0:1.12-517.fc43.n 100% | 13.5 MiB/s | 13.9 KiB | 00m00s [233/253] perl-if-0:0.61.000-517.fc43.n 100% | 6.9 MiB/s | 14.2 KiB | 00m00s [234/253] perl-IO-Socket-IP-0:0.43-2.fc 100% | 13.8 MiB/s | 42.4 KiB | 00m00s [235/253] perl-URI-0:5.31-2.fc42.noarch 100% | 45.8 MiB/s | 140.7 KiB | 00m00s [236/253] perl-AutoLoader-0:5.74-517.fc 100% | 10.5 MiB/s | 21.5 KiB | 00m00s [237/253] ncurses-0:6.5-5.20250125.fc42 100% | 58.9 MiB/s | 422.0 KiB | 00m00s [238/253] perl-Data-Dumper-0:2.189-513. 100% | 17.9 MiB/s | 55.0 KiB | 00m00s [239/253] perl-MIME-Base32-0:1.303-23.f 100% | 5.0 MiB/s | 20.5 KiB | 00m00s [240/253] perl-libnet-0:3.15-513.fc42.n 100% | 41.8 MiB/s | 128.4 KiB | 00m00s [241/253] perl-B-0:1.89-517.fc43.aarch6 100% | 57.6 MiB/s | 177.0 KiB | 00m00s [242/253] perl-FileHandle-0:2.05-517.fc 100% | 7.7 MiB/s | 15.7 KiB | 00m00s [243/253] perl-Digest-MD5-0:2.59-6.fc42 100% | 11.7 MiB/s | 35.9 KiB | 00m00s [244/253] perl-Digest-0:1.20-512.fc42.n 100% | 8.1 MiB/s | 24.9 KiB | 00m00s [245/253] python3-contourpy-0:1.3.2-1.f 100% | 83.1 MiB/s | 255.2 KiB | 00m00s [246/253] gcc-plugin-annobin-0:15.1.1-1 100% | 24.7 MiB/s | 50.6 KiB | 00m00s [247/253] annobin-plugin-gcc-0:12.93-1. 100% | 137.1 MiB/s | 982.7 KiB | 00m00s [248/253] pyproject-rpm-macros-0:1.18.1 100% | 14.6 MiB/s | 44.9 KiB | 00m00s [249/253] annobin-docs-0:12.93-1.fc43.n 100% | 15.0 MiB/s | 92.0 KiB | 00m00s [250/253] python3-rpm-generators-0:14-1 100% | 28.5 MiB/s | 29.2 KiB | 00m00s [251/253] python-rpm-macros-0:3.13-5.fc 100% | 8.2 MiB/s | 16.8 KiB | 00m00s [252/253] cmake-rpm-macros-0:3.31.6-2.f 100% | 16.3 MiB/s | 16.7 KiB | 00m00s [253/253] python3-rpm-macros-0:3.13-5.f 100% | 5.6 MiB/s | 11.5 KiB | 00m00s -------------------------------------------------------------------------------- [253/253] Total 100% | 232.4 MiB/s | 239.4 MiB | 00m01s Running 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MiB | 00m00s [243/255] Installing gcc-plugin-annobin 100% | 3.8 MiB/s | 70.8 KiB | 00m00s [244/255] Installing freeglut-devel-0:3 100% | 136.3 MiB/s | 2.3 MiB | 00m00s [245/255] Installing libtiff-devel-0:4. 100% | 107.7 MiB/s | 772.3 KiB | 00m00s [246/255] Installing python3-matplotlib 100% | 236.4 MiB/s | 22.5 MiB | 00m00s [247/255] Installing xorg-x11-server-Xv 100% | 28.7 MiB/s | 1.8 MiB | 00m00s [248/255] Installing boost-devel-0:1.83 100% | 175.8 MiB/s | 145.8 MiB | 00m01s [249/255] Installing python3-devel-0:3. 100% | 57.0 MiB/s | 1.8 MiB | 00m00s [250/255] Installing python3-flaky-0:3. 100% | 33.0 MiB/s | 135.0 KiB | 00m00s [251/255] Installing python3-setuptools 100% | 151.1 MiB/s | 8.8 MiB | 00m00s [252/255] Installing python3-wheel-1:0. 100% | 22.9 MiB/s | 562.2 KiB | 00m00s [253/255] Installing libXi-devel-0:1.8. 100% | 35.3 MiB/s | 144.6 KiB | 00m00s [254/255] Installing libXmu-devel-0:1.2 100% | 34.3 MiB/s | 70.2 KiB | 00m00s [255/255] Installing perl-macros-4:5.40 100% | 21.8 KiB/s | 5.8 KiB | 00m00s Warning: skipped OpenPGP checks for 2 packages from repository: copr_base Complete! Finish: build setup for smoldyn-2.72-7.fc43.src.rpm Start: rpmbuild smoldyn-2.72-7.fc43.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1737244800 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.fvgFnY Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ubzOtW + umask 022 + cd /builddir/build/BUILD/smoldyn-2.72-build + cd /builddir/build/BUILD/smoldyn-2.72-build + rm -rf Smoldyn-2.72 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Smoldyn-2.72.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd Smoldyn-2.72 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (smoldyn-fix_libpaths.patch):' Patch #0 (smoldyn-fix_libpaths.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .fix_libpaths --fuzz=0 patching file CMakeLists.txt + echo 'Patch #1 (smoldyn-freeglut.patch):' Patch #1 (smoldyn-freeglut.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .freeglut --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 370 (offset 44 lines). Patch #2 (smoldyn-create_soname.patch): + echo 'Patch #2 (smoldyn-create_soname.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .create_soname --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 490 (offset 5 lines). Hunk #2 succeeded at 522 (offset 52 lines). Patch #3 (smoldyn-avoid_automatic_wheel.patch): + echo 'Patch #3 (smoldyn-avoid_automatic_wheel.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .avoid_automatic_wheel --fuzz=0 patching file source/python/CMakeLists.txt Hunk #1 succeeded at 20 (offset -3 lines). + rm -rf source/MSVClibs + rm -rf source/pybind11 + rm -rf source/BioNetGen source/MinGWlibs Toolchain-mingw32.cmake + rm -rf source/vcell/SimpleMesh.cpp source/vcell/SimpleMesh.h source/vcell/SimpleValueProvider.cpp source/vcell/SimpleValueProvider.h source/vcell/zconf.h source/vcell/zlib.h source/vcell/zlib.lib source/NextSubVolume/Eigen + rm -rf source/NextSubVolume/boost_include + rm -f 'source/vtk/*' + find . -type f -name '*.h' -exec chmod 0644 '{}' ';' + find . -type f -name '*.c' -exec chmod 0644 '{}' ';' + find . -type f -name '*.pdf' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec sed -i 's/\r$//' '{}' ';' + sed -e 's|../../../source/BioNetGen/BNG2.pl|/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl|g' -i examples/S95_regression/lrmsim.txt examples/S12_bionetgen/lrm/lrmsim.txt examples/S12_bionetgen/abba/abbasim.txt examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrmsim.txt examples/S94_archive/Andrews_2016/BioNetGen/abba/abbasim.txt + cp -p source/libSteve/SFMT/LICENSE.txt source/libSteve/SFMT/SFMT-LICENSE.txt + cp -p source/libSteve/SFMT/README.txt source/libSteve/SFMT/SFMT-README.txt + find -name '*.pyc' -delete + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.a1qZhU + umask 022 + cd /builddir/build/BUILD/smoldyn-2.72-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.72 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -DCPACK_BINARY_STGZ:BOOL=OFF -DCPACK_BINARY_TGZ:BOOL=OFF -DCPACK_BINARY_TZ:BOOL=OFF -DCPACK_SOURCE_TBZ2:BOOL=OFF -DCPACK_SOURCE_TGZ:BOOL=OFF -DCPACK_SOURCE_TXZ:BOOL=OFF -DCPACK_SOURCE_TZ:BOOL=OFF -DOPTION_VCELL:BOOL=OFF -DOPTION_VTK:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=ON -DSMOLDYN_VERSION:STRING=2.72 -DSMOLDYN_VERSION_MAJOR:STRING=2 -DOPTION_TARGET_LIBSMOLDYN:BOOL=ON -DOPTION_STATIC:BOOL=OFF -DOPTION_PYTHON:BOOL=ON -DPYBIND11_FINDPYTHON:BOOL=ON -Dpybind11_DIR:PATH=/usr/share/cmake/pybind11 -DOPTION_USE_ZLIB:BOOL=ON -DOPTION_PDE:BOOL=ON -DPERL_VENDORLIB:PATH=/usr/share/perl5/vendor_perl -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=YES -DHAVE_GL_FREEGLUT_H=TRUE -DOPTION_EXAMPLES:BOOL=OFF -DOPTION_DOCS:BOOL=OFF -- The CXX compiler identification is GNU 15.1.1 -- The C compiler identification is GNU 15.1.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Smoldyn version is set to: '2.72' -- Compiling for Smoldyn: ON -- Compiling for Libsmoldyn: ON -- Option to compile Smoldyn for VCell: OFF -- Option to cross-compile for Windows using MinGW: OFF -- Option to include NextSubvolume: ON -- Option to include VTK: OFF -- Option to compile with static libraries: OFF -- Option to include OpenGL support: ON -- Option to include LibTiff: ON -- Option to include Zlib: ON -- Option to incude Python module: ON -- Option to run Libsmoldyn examples: OFF -- Option to build documentation: OFF -- Performing Test C_FLAG_EXISTS -- Performing Test C_FLAG_EXISTS - Success -- Performing Test CXX_FLAG_EXISTS -- Performing Test CXX_FLAG_EXISTS - Success -- [COMPILER] Adding -Wno-unused-parameter -- Build type: Release -- Compiling on a Linux computer -- CMAKE_CXX_FLAGS variable: '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' -- BioNetGen path: '/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl' -- Found OpenGL: /usr/lib64/libOpenGL.so -- OpenGL found: '/usr/include', '/usr/lib64/libGL.so;/usr/lib64/libGLU.so' -- Found GLUT: /usr/lib64/libglut.so -- Found TIFF: /usr/lib64/libtiff.so (found version "4.7.0") -- Found Libtiff: '/usr/include', '/usr/lib64/libtiff.so' -- Found Zlib: '/usr/include', '/usr/lib64/libz.so' -- Boost headers found: '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include' -- Found Python3: /usr/bin/python3.13 (found version "3.13.3") found components: Interpreter Development Development.Module Development.Embed -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.6") -- [TEST] Found 15 test scripts -- Configuring done (2.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_INSTALL_FULL_SBINDIR CMAKE_INSTALL_SBINDIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j4 --verbose Change Dir: '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4 /usr/bin/cmake -S/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 -B/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CMakeFiles /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/depend /usr/bin/gmake -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve/CMakeFiles/Steve.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume/CMakeFiles/nsv.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/build /usr/bin/gmake -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' [ 2%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o [ 2%] Building C object source/libSteve/CMakeFiles/Steve.dir/List.c.o [ 3%] Building C object source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o [ 4%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o -MF CMakeFiles/nsv.dir/StructuredGrid.cpp.o.d -o CMakeFiles/nsv.dir/StructuredGrid.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/StructuredGrid.cpp cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/List.c.o -MF CMakeFiles/Steve.dir/List.c.o.d -o CMakeFiles/Steve.dir/List.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/List.c cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o -MF CMakeFiles/nsv.dir/Species.cpp.o.d -o CMakeFiles/nsv.dir/Species.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/Species.cpp cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o -MF CMakeFiles/Steve.dir/Geometry.c.o.d -o CMakeFiles/Steve.dir/Geometry.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/Geometry.c [ 6%] Building C object source/libSteve/CMakeFiles/Steve.dir/math2.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/math2.c.o -MF CMakeFiles/Steve.dir/math2.c.o.d -o CMakeFiles/Steve.dir/math2.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/math2.c [ 7%] Building C object source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o -MF CMakeFiles/Steve.dir/opengl2.c.o.d -o CMakeFiles/Steve.dir/opengl2.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/opengl2.c [ 8%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o -MF CMakeFiles/nsv.dir/ReactionEquation.cpp.o.d -o CMakeFiles/nsv.dir/ReactionEquation.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/ReactionEquation.cpp [ 9%] Building C object source/libSteve/CMakeFiles/Steve.dir/parse.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/parse.c.o -MF CMakeFiles/Steve.dir/parse.c.o.d -o CMakeFiles/Steve.dir/parse.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/parse.c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/parse.c: In function ‘Parse_ReadLine’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/parse.c:382:60: warning: comparison is always true due to limited range of data type [-Wtype-limits] 382 | while((ch=fgetc(pfp->fptr))!=EOF && ch!='\n' && ch!='\r'); | ^~ [ 11%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -MF CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o.d -o CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/NextSubvolumeMethod.cpp [ 12%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o -MF CMakeFiles/nsv.dir/Kairos.cpp.o.d -o CMakeFiles/nsv.dir/Kairos.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/Kairos.cpp [ 13%] Building C object source/libSteve/CMakeFiles/Steve.dir/queue.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/queue.c.o -MF CMakeFiles/Steve.dir/queue.c.o.d -o CMakeFiles/Steve.dir/queue.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/queue.c [ 14%] Building C object source/libSteve/CMakeFiles/Steve.dir/random2.c.o cd 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source/libSteve/CMakeFiles/Steve.dir/random2.c.o -MF CMakeFiles/Steve.dir/random2.c.o.d -o CMakeFiles/Steve.dir/random2.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/random2.c [ 16%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o -MF CMakeFiles/nsv.dir/Io.cpp.o.d -o CMakeFiles/nsv.dir/Io.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/Io.cpp [ 17%] Building C object source/libSteve/CMakeFiles/Steve.dir/Rn.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Rn.c.o -MF CMakeFiles/Steve.dir/Rn.c.o.d -o CMakeFiles/Steve.dir/Rn.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/Rn.c [ 18%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ 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/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/Geometry.cpp [ 19%] Building C object source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o -MF CMakeFiles/Steve.dir/RnSort.c.o.d -o CMakeFiles/Steve.dir/RnSort.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/RnSort.c [ 20%] Building C object source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o -MF CMakeFiles/Steve.dir/rxnparam.c.o.d -o CMakeFiles/Steve.dir/rxnparam.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/rxnparam.c [ 22%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve 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source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o -MF CMakeFiles/Steve.dir/SimCommand.c.o.d -o CMakeFiles/Steve.dir/SimCommand.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/SimCommand.c [ 24%] Building C object source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o -MF CMakeFiles/Steve.dir/Sphere.c.o.d -o CMakeFiles/Steve.dir/Sphere.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/Sphere.c [ 25%] Building C object source/libSteve/CMakeFiles/Steve.dir/string2.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/string2.c.o -MF CMakeFiles/Steve.dir/string2.c.o.d -o CMakeFiles/Steve.dir/string2.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/string2.c [ 27%] Building C object source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o cd 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source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o -MF CMakeFiles/Steve.dir/SurfaceParam.c.o.d -o CMakeFiles/Steve.dir/SurfaceParam.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/SurfaceParam.c [ 28%] Building C object source/libSteve/CMakeFiles/Steve.dir/Zn.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Zn.c.o -MF CMakeFiles/Steve.dir/Zn.c.o.d -o CMakeFiles/Steve.dir/Zn.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/Zn.c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/string2.c: In function ‘strmatheval’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/string2.c:1415:9: warning: ‘strncpy’ specified bound 512 equals destination size [-Wstringop-truncation] 1415 | strncpy(expr,expression,STRCHAR); | ^ [ 29%] Building C object source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o -MF CMakeFiles/Steve.dir/SFMT/SFMT.c.o.d -o CMakeFiles/Steve.dir/SFMT/SFMT.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/SFMT/SFMT.c gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' [ 29%] Built target Steve gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' [ 29%] Built target nsv /usr/bin/gmake -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend /usr/bin/gmake -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend /usr/bin/gmake -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/_pysmoldyn.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/build /usr/bin/gmake -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' [ 33%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o [ 32%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o [ 32%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c [ 34%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/random2.h:17, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ [ 35%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcmd.c In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:14: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:14: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:14: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4066 [-Wformat-truncation=] 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4066 [-Wformat-truncation=] 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4066 [-Wformat-truncation=] 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:61: note: format string is defined here 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:61: note: format string is defined here 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:61: note: format string is defined here 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:8: In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:3: In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:8: In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:3: In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:8: In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:3: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 80 and 4175 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 80 and 4175 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 80 and 4175 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4080 [-Wformat-truncation=] 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4080 [-Wformat-truncation=] 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4080 [-Wformat-truncation=] 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:47: note: format string is defined here 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:47: note: format string is defined here 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:47: note: format string is defined here 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:3: In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:3: In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:3: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:31: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4087 [-Wformat-truncation=] 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:31: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4087 [-Wformat-truncation=] 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:41: note: format string is defined here 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:31: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4087 [-Wformat-truncation=] 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:41: note: format string is defined here 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:3: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:41: note: format string is defined here 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:3: In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:3: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 24 and 4119 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 24 and 4119 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 24 and 4119 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:36: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4075 [-Wformat-truncation=] 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:58: note: format string is defined here 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:36: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4075 [-Wformat-truncation=] 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:36: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4075 [-Wformat-truncation=] 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:4: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:58: note: format string is defined here 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:58: note: format string is defined here 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:4: In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:4: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 22 and 4117 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 22 and 4117 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 22 and 4117 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:54: note: format string is defined here 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:4: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:54: note: format string is defined here 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:54: note: format string is defined here 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:4: In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:4: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 33 and 4128 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 33 and 4128 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 33 and 4128 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4067 [-Wformat-truncation=] 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:69: note: format string is defined here 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4067 [-Wformat-truncation=] 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:4: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4067 [-Wformat-truncation=] 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:69: note: format string is defined here 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:69: note: format string is defined here 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:4: In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:4: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 30 and 4125 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 30 and 4125 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 30 and 4125 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 37%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o [ 38%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c [ 39%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:18: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c: In function ‘compartreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:29: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:44: note: format string is defined here 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:9: In function ‘snprintf’, inlined from ‘compartreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:3: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 31 and 4126 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/random2.h:17, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/random2.h:17, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ [ 40%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcmd.c [ 41%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcmd.c [ 43%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolfilament.c [ 44%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:18: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c: In function ‘compartreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:29: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:44: note: format string is defined here 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:9: In function ‘snprintf’, inlined from ‘compartreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:3: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 31 and 4126 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 45%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:18: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c: In function ‘compartreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:29: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:44: note: format string is defined here 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:9: In function ‘snprintf’, inlined from ‘compartreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:3: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 31 and 4126 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 46%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolgraphics.c [ 48%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolfilament.c [ 49%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolmolec.c [ 50%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolfilament.c [ 51%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolport.c [ 53%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolgraphics.c [ 54%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolgraphics.c [ 55%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolmolec.c [ 56%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smollattice.c [ 58%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolmolec.c [ 59%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolport.c [ 60%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolreact.c [ 61%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolport.c [ 62%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smollattice.c [ 64%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolrule.c [ 65%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolreact.c [ 66%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smollattice.c [ 67%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolrule.c [ 69%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp [ 70%] Building CXX object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp [ 71%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolreact.c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp: In function ‘simParseError’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:58: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 603 and 4698 [-Wformat-overflow=] 166 | sprintf(ErrorLineAndString,"%s\nMessage: %s",parseerrstr,ErrorString); | ^~ ~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from /usr/include/c++/15/cstdio:47, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:12: In function ‘sprintf’, inlined from ‘simParseError’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:10: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 8201 bytes into a destination of size 4708 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:27: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::func_’ [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::target_’ [-Wattributes] /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::args_’ [-Wattributes] [ 72%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsurface.c [ 74%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsurface.c [ 75%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolrule.c [ 76%] Building CXX object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o /usr/bin/g++ -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp: In function ‘simParseError’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:58: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 603 and 4698 [-Wformat-overflow=] 166 | sprintf(ErrorLineAndString,"%s\nMessage: %s",parseerrstr,ErrorString); | ^~ ~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from /usr/include/c++/15/cstdio:47, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:12: In function ‘sprintf’, inlined from ‘simParseError’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:10: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 8201 bytes into a destination of size 4708 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp: In function ‘simParseError’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:58: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 603 and 4698 [-Wformat-overflow=] 166 | sprintf(ErrorLineAndString,"%s\nMessage: %s",parseerrstr,ErrorString); | ^~ ~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from /usr/include/c++/15/cstdio:47, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:12: In function ‘sprintf’, inlined from ‘simParseError’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:10: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 8201 bytes into a destination of size 4708 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 77%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsurface.c [ 79%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolwall.c [ 80%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolwall.c [ 81%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolwall.c [ 82%] Building CXX object CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp [ 83%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp:15: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::func_’ [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::target_’ [-Wattributes] /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::args_’ [-Wattributes] [ 85%] Linking CXX static library libsmoldyn_static.a /usr/bin/cmake -P CMakeFiles/smoldyn_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_static.dir/link.txt --verbose=1 /usr/bin/ar qc libsmoldyn_static.a CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o 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same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: type name ‘NextSubvolumeMethod’ should match type name ‘Kairos::NextSubvolumeMethod’ 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ [ 88%] Linking CXX static library lib_pysmoldyn.a cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -P CMakeFiles/_pysmoldyn.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_pysmoldyn.dir/link.txt --verbose=1 /usr/bin/ar qc lib_pysmoldyn.a CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o 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source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' [ 90%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/external/pybind11/include -isystem /usr/include/python3.13 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -MF CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o.d -o CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/CallbackFunc.cpp [ 91%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/external/pybind11/include -isystem /usr/include/python3.13 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o -MF CMakeFiles/_smoldyn.dir/Command.cpp.o.d -o CMakeFiles/_smoldyn.dir/Command.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/Command.cpp [ 92%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/external/pybind11/include -isystem /usr/include/python3.13 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o -MF CMakeFiles/_smoldyn.dir/Simulation.cpp.o.d -o CMakeFiles/_smoldyn.dir/Simulation.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/Simulation.cpp [ 93%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/module.cpp.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/external/pybind11/include -isystem /usr/include/python3.13 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/module.cpp.o -MF CMakeFiles/_smoldyn.dir/module.cpp.o.d -o CMakeFiles/_smoldyn.dir/module.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/module.cpp /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^ /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,--dependency-file=CMakeFiles/smoldyn_shared.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsmoldyn_shared.so.2 -o libsmoldyn_shared.so.2.72 CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so /usr/bin/cmake -E cmake_symlink_library libsmoldyn_shared.so.2.72 libsmoldyn_shared.so.2 libsmoldyn_shared.so gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' [ 93%] Built target smoldyn_shared /usr/bin/gmake -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CMakeFiles/smoldyn.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' [ 95%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -MF CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o.d -o CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.cpp [ 96%] Linking CXX executable smoldyn /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/smoldyn.dir/link.d CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -o smoldyn libsmoldyn_shared.so.2.72 /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' [ 96%] Built target smoldyn [ 97%] Linking CXX shared module /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/smoldyn/_smoldyn.cpython-313-aarch64-linux-gnu.so cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_smoldyn.dir/link.txt --verbose=1 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/../Smoldyn/smoldyn.h:1045:16: warning: type ‘struct simstruct’ violates the C++ One Definition Rule [-Wodr] 1045 | typedef struct simstruct | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:1045:16: note: a different type is defined in another translation unit 1045 | typedef struct simstruct | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/../Smoldyn/smoldyn.h:1106:19: note: the first difference of corresponding definitions is field ‘callbacks’ 1106 | CallbackFunc* callbacks[MAX_PY_CALLBACK]; // Python callback. | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:1045:16: note: a type with different number of fields is defined in another translation unit 1045 | typedef struct simstruct | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: warning: type ‘struct latticestruct’ violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field ‘nsv’ 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: type name ‘NextSubvolumeMethod’ should match type name ‘Kairos::NextSubvolumeMethod’ 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^ /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -flto -Wl,--dependency-file=CMakeFiles/_smoldyn.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/smoldyn/_smoldyn.cpython-313-aarch64-linux-gnu.so CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o CMakeFiles/_smoldyn.dir/Command.cpp.o CMakeFiles/_smoldyn.dir/Simulation.cpp.o CMakeFiles/_smoldyn.dir/module.cpp.o lib_pysmoldyn.a /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/strip /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/smoldyn/_smoldyn.cpython-313-aarch64-linux-gnu.so gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' [ 97%] Built target _smoldyn /usr/bin/gmake -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend /usr/bin/gmake -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' [ 98%] Generating wheel in /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build [100%] Copying python source tree to binary directory cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py && /usr/bin/python3.13 setup.py bdist_wheel -d /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/smoldyn /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py/smoldyn gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' [100%] Built target copy_python_tree /usr/lib/python3.13/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Lesser General Public License v3 (LGPLv3) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running bdist_wheel running build running build_py creating build/lib.linux-aarch64-cpython-313/smoldyn copying smoldyn/__init__.py -> build/lib.linux-aarch64-cpython-313/smoldyn copying smoldyn/__main__.py -> build/lib.linux-aarch64-cpython-313/smoldyn copying smoldyn/smoldyn.py -> build/lib.linux-aarch64-cpython-313/smoldyn copying smoldyn/types.py -> build/lib.linux-aarch64-cpython-313/smoldyn copying smoldyn/utils.py -> build/lib.linux-aarch64-cpython-313/smoldyn creating build/lib.linux-aarch64-cpython-313/smoldyn/biosimulators copying smoldyn/biosimulators/__init__.py -> build/lib.linux-aarch64-cpython-313/smoldyn/biosimulators copying smoldyn/biosimulators/__main__.py -> build/lib.linux-aarch64-cpython-313/smoldyn/biosimulators copying smoldyn/biosimulators/_version.py -> build/lib.linux-aarch64-cpython-313/smoldyn/biosimulators copying smoldyn/biosimulators/combine.py -> build/lib.linux-aarch64-cpython-313/smoldyn/biosimulators copying smoldyn/biosimulators/data_model.py -> build/lib.linux-aarch64-cpython-313/smoldyn/biosimulators copying smoldyn/biosimulators/utils.py -> build/lib.linux-aarch64-cpython-313/smoldyn/biosimulators copying smoldyn/_smoldyn.cpython-313-aarch64-linux-gnu.so -> build/lib.linux-aarch64-cpython-313/smoldyn running build_ext /usr/lib/python3.13/site-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/smoldyn copying build/lib.linux-aarch64-cpython-313/smoldyn/__init__.py -> build/bdist.linux-aarch64/wheel/./smoldyn copying build/lib.linux-aarch64-cpython-313/smoldyn/__main__.py -> build/bdist.linux-aarch64/wheel/./smoldyn copying build/lib.linux-aarch64-cpython-313/smoldyn/smoldyn.py -> build/bdist.linux-aarch64/wheel/./smoldyn copying build/lib.linux-aarch64-cpython-313/smoldyn/types.py -> build/bdist.linux-aarch64/wheel/./smoldyn copying build/lib.linux-aarch64-cpython-313/smoldyn/utils.py -> build/bdist.linux-aarch64/wheel/./smoldyn creating build/bdist.linux-aarch64/wheel/smoldyn/biosimulators copying build/lib.linux-aarch64-cpython-313/smoldyn/biosimulators/__init__.py -> build/bdist.linux-aarch64/wheel/./smoldyn/biosimulators copying build/lib.linux-aarch64-cpython-313/smoldyn/biosimulators/__main__.py -> build/bdist.linux-aarch64/wheel/./smoldyn/biosimulators copying build/lib.linux-aarch64-cpython-313/smoldyn/biosimulators/_version.py -> build/bdist.linux-aarch64/wheel/./smoldyn/biosimulators copying build/lib.linux-aarch64-cpython-313/smoldyn/biosimulators/combine.py -> build/bdist.linux-aarch64/wheel/./smoldyn/biosimulators copying build/lib.linux-aarch64-cpython-313/smoldyn/biosimulators/data_model.py -> build/bdist.linux-aarch64/wheel/./smoldyn/biosimulators copying build/lib.linux-aarch64-cpython-313/smoldyn/biosimulators/utils.py -> build/bdist.linux-aarch64/wheel/./smoldyn/biosimulators copying build/lib.linux-aarch64-cpython-313/smoldyn/_smoldyn.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./smoldyn running install_egg_info running egg_info creating smoldyn.egg-info writing smoldyn.egg-info/PKG-INFO writing dependency_links to smoldyn.egg-info/dependency_links.txt writing requirements to smoldyn.egg-info/requires.txt writing top-level names to smoldyn.egg-info/top_level.txt writing manifest file 'smoldyn.egg-info/SOURCES.txt' reading manifest file 'smoldyn.egg-info/SOURCES.txt' writing manifest file 'smoldyn.egg-info/SOURCES.txt' Copying smoldyn.egg-info to build/bdist.linux-aarch64/wheel/./smoldyn-2.72-py3.13.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/smoldyn-2.72.dist-info/WHEEL creating '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/smoldyn-2.72-cp313-cp313-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'smoldyn/__init__.py' adding 'smoldyn/__main__.py' adding 'smoldyn/_smoldyn.cpython-313-aarch64-linux-gnu.so' adding 'smoldyn/smoldyn.py' adding 'smoldyn/types.py' adding 'smoldyn/utils.py' adding 'smoldyn/biosimulators/__init__.py' adding 'smoldyn/biosimulators/__main__.py' adding 'smoldyn/biosimulators/_version.py' adding 'smoldyn/biosimulators/combine.py' adding 'smoldyn/biosimulators/data_model.py' adding 'smoldyn/biosimulators/utils.py' adding 'smoldyn-2.72.dist-info/METADATA' adding 'smoldyn-2.72.dist-info/WHEEL' adding 'smoldyn-2.72.dist-info/top_level.txt' adding 'smoldyn-2.72.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' [100%] Built target wheel gmake[1]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CMakeFiles 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.WyjaGL + umask 022 + cd /builddir/build/BUILD/smoldyn-2.72-build + '[' /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT ++ dirname /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT + mkdir -p /builddir/build/BUILD/smoldyn-2.72-build + mkdir /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.72 + DESTDIR=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/bin/smoldyn -- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/libsmoldyn_shared.so.2.72 -- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/libsmoldyn_shared.so.2 -- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/libsmoldyn_shared.so -- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/libsmoldyn_static.a -- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/include/smoldyn/libsmoldyn.h -- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/include/smoldyn/smoldyn.h -- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/include/smoldyn/smoldynconfigure.h + pushd redhat-linux-build/py ~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py ~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 + mkdir -p /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages + cp -a smoldyn smoldyn.egg-info /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/ + popd ~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2.72-7.fc43 --unique-debug-suffix -2.72-7.fc43.aarch64 --unique-debug-src-base smoldyn-2.72-7.fc43.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 find-debuginfo: starting Extracting debug info from 2 files DWARF-compressing 2 files sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/smoldyn-2.72-7.fc43.aarch64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/biosimulators/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/biosimulators/__pycache__/__main__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/biosimulators/__pycache__/_version.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/libsmoldyn_static.a: replacing with normalized version /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/biosimulators/__pycache__/data_model.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/__pycache__/__main__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/biosimulators/__pycache__/utils.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/biosimulators/__pycache__/combine.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/__pycache__/types.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/__pycache__/types.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/__pycache__/utils.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/__pycache__/smoldyn.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/__pycache__/smoldyn.cpython-313.opt-1.pyc: replacing with normalized version Scanned 31 directories and 119 files, processed 14 inodes, 14 modified (5 replaced + 9 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/smoldyn-2.72-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.B2hpkt + umask 022 + cd /builddir/build/BUILD/smoldyn-2.72-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS ~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build ~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.72 + pushd redhat-linux-build + export LD_LIBRARY_PATH=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64 + LD_LIBRARY_PATH=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64 + export PYTHONPATH=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages + PYTHONPATH=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages + xvfb-run ctest -j1 -VV -R 'test_api|test_sanity|test_biosimulator' --output-on-failure --debug /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/cmCTest.cxx:429 Here: 429 /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/cmCTest.cxx:713 UpdateCTestConfiguration from :/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/cmCTest.cxx:441 Here: 441 /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/cmCTest.cxx:3101 * Read custom CTest configuration directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/cmCTest.cxx:3106 * Check for file: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CTestCustom.cmake /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/cmCTest.cxx:3126 * Check for file: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CTestCustom.ctest /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/cmCTest.cxx:713 UpdateCTestConfiguration from :/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:411 Test project /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:1819 Constructing a list of tests /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_actions /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_api /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_biosimulators /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_concurrent_simulation /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_connect_func /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_connect_var /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_data_in_array /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_data_outputfile /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_getters /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_issue_118 /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_libsmoldyn /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_multiple_iterations /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_prd_placement /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_sanity /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_sim_from_file /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:1885 Done constructing a list of tests /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:1032 Updating test list for fixtures /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:1255 Added 0 tests to meet fixture requirements /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/cmCTest.cxx:314 Current_Time: Apr 30 14:36 UTC /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/cmCTest.cxx:314 Current_Time: Apr 30 14:36 UTC /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestMultiProcessHandler.cxx:1519 Checking test dependency graph... /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestMultiProcessHandler.cxx:1548 Checking test dependency graph end /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestMultiProcessHandler.cxx:219 test 2 /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:550 Start 2: test_api /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:711 2: Test command: /usr/bin/python3.13 "/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests/test_api.py" /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:719 2: Working Directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:727 2: Environment variables: /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:732 2: PYTHONPATH=/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:732 2: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/cmCTest.cxx:314 Current_Time: Apr 30 14:36 UTC /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:831 2: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:1010 1/3 Test #2: test_api ......................... /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:1013 Testing test_api ... /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:272 Passed 0.25 sec /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/cmCTest.cxx:314 Current_Time: Apr 30 14:36 UTC /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestMultiProcessHandler.cxx:219 test 3 /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:550 Start 3: test_biosimulators /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:711 3: Test command: /usr/bin/python3.13 "/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests/test_biosimulators.py" /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:719 3: Working Directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:727 3: Environment variables: /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:732 3: PYTHONPATH=/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:732 3: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/cmCTest.cxx:314 Current_Time: Apr 30 14:36 UTC /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:831 3: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:43 3: ssssssssssssssssssssssss /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:43 3: ---------------------------------------------------------------------- /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:43 3: Ran 24 tests in 0.000s /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:43 3: /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:43 3: OK (skipped=24) /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:1010 2/3 Test #3: test_biosimulators ............... /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:1013 Testing test_biosimulators ... /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:272 Passed 0.29 sec /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/cmCTest.cxx:314 Current_Time: Apr 30 14:36 UTC /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestMultiProcessHandler.cxx:219 test 14 /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:550 Start 14: test_sanity /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:711 14: Test command: /usr/bin/python3.13 "/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests/test_sanity.py" /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:719 14: Working Directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:727 14: Environment variables: /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:732 14: PYTHONPATH=/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:732 14: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/cmCTest.cxx:314 Current_Time: Apr 30 14:36 UTC /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:831 14: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:43 14: Using smoldyn from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py/smoldyn/__init__.py /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:43 14: test_newcursim /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:43 14: /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:43 14: Testing test_get_err /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:43 14: (, '') /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:1010 3/3 Test #14: test_sanity ...................... /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:1013 Testing test_sanity ... /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestRunTest.cxx:272 Passed 0.23 sec /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/cmCTest.cxx:314 Current_Time: Apr 30 14:36 UTC /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/cmCTest.cxx:314 Current_Time: Apr 30 14:36 UTC /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/cmCTest.cxx:314 Current_Time: Apr 30 14:36 UTC /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:450 The following tests passed: /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:455 test_api /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:455 test_biosimulators /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:455 test_sanity /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:636 100% tests passed, 0 tests failed out of 3 /builddir/build/BUILD/cmake-3.31.6-build/cmake-3.31.6/Source/CTest/cmCTestTestHandler.cxx:652 Total Test time (real) = 0.78 sec + popd ~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 + RPM_EC=0 ++ jobs -p + exit 0 Processing files: smoldyn-2.72-7.fc43.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Z30prt + umask 022 + cd /builddir/build/BUILD/smoldyn-2.72-build + cd Smoldyn-2.72 + DOCDIR=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/Using-Smoldyn-with-SED-ML-COMBINE-BioSimulators.md /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/README.md /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: bundled(SFMT) = 1.3.3 smoldyn = 2.72-7.fc43 smoldyn(aarch-64) = 2.72-7.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libsmoldyn_shared.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) rtld(GNU_HASH) Processing files: smoldyn-doc-2.72-7.fc43.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.hFfVib + umask 022 + cd /builddir/build/BUILD/smoldyn-2.72-build + cd Smoldyn-2.72 + DOCDIR=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/BioNetGen /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/CMakeLists.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/Doxyfile.in /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/README.md /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/SmolCrowd /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/SmolEmulate /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/Smoldyn /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/_static /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/build_doxygen /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/conf.py /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/doxygen /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/examples /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/index.rst /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/libSteve /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/python /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/requirements.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/tikz /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/user /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/wrl2smol /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: smoldyn-doc = 2.72-7.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-libs-2.72-7.fc43.aarch64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.r2Dd6u + umask 022 + cd /builddir/build/BUILD/smoldyn-2.72-build + cd Smoldyn-2.72 + LICENSEDIR=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/smoldyn-libs + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/License.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/LICENSE /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/smoldyn-libs + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsmoldyn_shared.so.2()(64bit) smoldyn-libs = 2.72-7.fc43 smoldyn-libs(aarch-64) = 2.72-7.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) rtld(GNU_HASH) Processing files: smoldyn-libs-devel-2.72-7.fc43.aarch64 Provides: smoldyn-libs-devel = 2.72-7.fc43 smoldyn-libs-devel(aarch-64) = 2.72-7.fc43 smoldyn-libs-static = 0:2.72-7.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libsmoldyn_shared.so.2()(64bit) Processing files: python3-smoldyn-2.72-7.fc43.aarch64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.kDaLMd + umask 022 + cd /builddir/build/BUILD/smoldyn-2.72-build + cd Smoldyn-2.72 + LICENSEDIR=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/python3-smoldyn + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/License.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/LICENSE /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/python3-smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-smoldyn = 2.72-7.fc43 python3-smoldyn = 2.72-7.fc43 python3-smoldyn(aarch-64) = 2.72-7.fc43 python3.13-smoldyn = 2.72-7.fc43 python3.13dist(smoldyn) = 2.72 python3dist(smoldyn) = 2.72 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) python(abi) = 3.13 rtld(GNU_HASH) Obsoletes: python-smoldyn < 2.72-7.fc43 Processing files: smoldyn-debugsource-2.72-7.fc43.aarch64 Provides: smoldyn-debugsource = 2.72-7.fc43 smoldyn-debugsource(aarch-64) = 2.72-7.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-debuginfo-2.72-7.fc43.aarch64 Provides: debuginfo(build-id) = c6712471fce5a63d46543bb52cb94b9a7eeee662 smoldyn-debuginfo = 2.72-7.fc43 smoldyn-debuginfo(aarch-64) = 2.72-7.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(aarch-64) = 2.72-7.fc43 Processing files: smoldyn-libs-debuginfo-2.72-7.fc43.aarch64 Provides: debuginfo(build-id) = 75eb74984c0dabf14ecdeb6e10324a236d69e195 libsmoldyn_shared.so.2.72-2.72-7.fc43.aarch64.debug()(64bit) smoldyn-libs-debuginfo = 2.72-7.fc43 smoldyn-libs-debuginfo(aarch-64) = 2.72-7.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(aarch-64) = 2.72-7.fc43 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT Wrote: /builddir/build/RPMS/python3-smoldyn-2.72-7.fc43.aarch64.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-devel-2.72-7.fc43.aarch64.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-2.72-7.fc43.aarch64.rpm Wrote: /builddir/build/RPMS/smoldyn-2.72-7.fc43.aarch64.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-debuginfo-2.72-7.fc43.aarch64.rpm Wrote: /builddir/build/RPMS/smoldyn-debuginfo-2.72-7.fc43.aarch64.rpm Wrote: /builddir/build/RPMS/smoldyn-debugsource-2.72-7.fc43.aarch64.rpm Wrote: /builddir/build/RPMS/smoldyn-doc-2.72-7.fc43.noarch.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.C2fWM2 + umask 022 + cd /builddir/build/BUILD/smoldyn-2.72-build + test -d /builddir/build/BUILD/smoldyn-2.72-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/smoldyn-2.72-build + rm -rf /builddir/build/BUILD/smoldyn-2.72-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild smoldyn-2.72-7.fc43.src.rpm Finish: build phase for smoldyn-2.72-7.fc43.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1746023660.880630/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/smoldyn-2.72-7.fc43.src.rpm) Config(child) 1 minutes 30 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "smoldyn-libs-debuginfo", "epoch": null, "version": "2.72", "release": "7.fc43", "arch": "aarch64" }, { "name": "python3-smoldyn", "epoch": null, "version": "2.72", "release": "7.fc43", "arch": "aarch64" }, { "name": "smoldyn", "epoch": null, "version": "2.72", "release": "7.fc43", "arch": "aarch64" }, { "name": "smoldyn-doc", "epoch": null, "version": "2.72", "release": "7.fc43", "arch": "noarch" }, { "name": "smoldyn", "epoch": null, "version": "2.72", "release": "7.fc43", "arch": "src" }, { "name": "smoldyn-debugsource", "epoch": null, "version": "2.72", "release": "7.fc43", "arch": "aarch64" }, { "name": "smoldyn-libs", "epoch": null, "version": "2.72", "release": "7.fc43", "arch": "aarch64" }, { "name": "smoldyn-debuginfo", "epoch": null, "version": "2.72", "release": "7.fc43", "arch": "aarch64" }, { "name": "smoldyn-libs-devel", "epoch": null, "version": "2.72", "release": "7.fc43", "arch": "aarch64" } ] } RPMResults finished