Generates filtered and optimized assays using TraML files.
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OpenSwathDecoyGenerator |
This module generates assays for targeted proteomics using a set of rules that was found to improve the sensitivity and selectivity for detection of typical peptides (Schubert et al., 2015). The tool operates on TraML files, which can come from TargetedFileConverter or any other tool. If the TraML is annotated with the CV terms for fragment ion annotation, it can directly filter the transitions according to the set rules. If this is not the case (e.g. if an older version of TargetedFileConverter was used), the option -enable_reannotation can do the reannotation.
The command line parameters of this tool are:
The algorithm parameters for the Analyzer filter are:
OpenMS / TOPP release 2.2.0 | Documentation generated on Tue Aug 29 2017 11:28:57 using doxygen 1.8.13 |