runType {RDML} | R Documentation |
runType R6 class.
Description
A run is a set of reactions performed in one "run", for example one plate, one rotor, one array, one chip. Inherits: rdmlBaseType.
Format
An R6Class
generator object.
Initialization
runType$new(id, description = NULL, documentation = NULL, experimenter = NULL, instrument = NULL, dataCollectionSoftware = NULL, backgroundDeterminationMethod = NULL, cqDetectionMethod = NULL, thermalCyclingConditions = NULL, pcrFormat, runDate = NULL, react = NULL)
Fields
id
description
documentation
list
of idReferencesType.experimenter
list
of idReferencesType.instrument
checkString. Description of the instrument used to aquire the data.
dataCollectionSoftware
dataCollectionSoftwareType. Description of the software used to analyze/collect the data.
backgroundDeterminationMethod
checkString. Description of method used to determine the background.
cqDetectionMethod
cqDetectionMethodType. Description of method used to calculate the quantification cycle.
thermalCyclingConditions
idReferencesType. The program used to aquire the data.
pcrFormat
runDate
adpsType. Time stamp of data acquisition.
react
list
of adpsType.
Methods
AsDataFrame(dp.type = "adp")
Represents amplification (
dp.type = "adp"
) or melting (dp.type = "mdp"
) data points asdata.frame
Super class
RDML::rdmlBaseType
-> runType
Methods
Public methods
Inherited methods
Method new()
Usage
runType$new( id, description = NULL, documentation = NULL, experimenter = NULL, instrument = NULL, dataCollectionSoftware = NULL, backgroundDeterminationMethod = NULL, cqDetectionMethod = NULL, thermalCyclingConditions = NULL, pcrFormat, runDate = NULL, react = NULL )
Method GetFData()
Usage
runType$GetFData(dp.type = "adp", long.table = FALSE)
Method UpdateReactsPosition()
Usage
runType$UpdateReactsPosition()
Method clone()
The objects of this class are cloneable with this method.
Usage
runType$clone(deep = FALSE)
Arguments
deep
Whether to make a deep clone.