inspect_point_species {commecometrics} | R Documentation |
Inspect overlapping species at sampling points
Description
Creates an interactive map to verify species overlap at selected points.
Usage
inspect_point_species(
traits_summary,
point_ids = NULL,
n_random = 10,
lon_col = "Longitude",
lat_col = "Latitude",
ID_col = "ID",
min_species_valid = 3,
env_var = NULL
)
Arguments
traits_summary |
A list output from |
point_ids |
Optional. A vector of specific point IDs to inspect. If NULL, selects |
n_random |
Number of random points to inspect if |
lon_col |
Name of the longitude column in |
lat_col |
Name of the latitude column in |
ID_col |
Name of the ID column in |
min_species_valid |
Minimum number of species with trait data to consider a point valid (default = 3). |
env_var |
Optional. Name of the environmental variable column in |
Value
An interactive leaflet map showing selected points with species list popups.
Examples
# Load sample data from the package
data("geoPoints", package = "commecometrics")
data("traits", package = "commecometrics")
data("spRanges", package = "commecometrics")
# Summarize traits at points
traitsByPoint <- summarize_traits_by_point(
points_df = geoPoints,
trait_df = traits,
species_polygons = spRanges,
trait_column = "RBL",
species_name_col = "sci_name",
continent = FALSE,
parallel = FALSE
)
# Visualize a random sample of 10 points
inspect_point_species(
traits_summary = traitsByPoint,
n_random = 10,
min_species_valid = 3
)