plotSAEM {REMixed} | R Documentation |
Display the value of parameters at each iteration
Description
Display the value of parameters at each iteration
Usage
plotSAEM(fit, paramToPlot = "all", trueValue = NULL)
Arguments
fit |
object of class remix, from |
paramToPlot |
Population parameters to plot (which have been estimated by SAEM) ; |
trueValue |
(for simulation purpose) vector named of true values ; |
Value
For each parameters, the values at the end of each iteration of remix algorithm is drawn. Moreover, the SAEM steps of each iteration are displayed.
See Also
Examples
## Not run:
project <- getMLXdir()
ObsModel.transfo = list(S=list(AB=log10),
linkS="yAB",
R=rep(list(S=function(x){x}),5),
linkR = paste0("yG",1:5))
alpha=list(alpha0=NULL,
alpha1=setNames(paste0("alpha_1",1:5),paste0("yG",1:5)))
y = c(S=5,AB=1000)
lambda = 1440
res = remix(project = project,
dynFUN = dynFUN_demo,
y = y,
ObsModel.transfo = ObsModel.transfo,
alpha = alpha,
selfInit = TRUE,
eps1=10**(-2),
eps2=1,
lambda=lambda)
plotConvergence(res)
trueValue = read.csv(paste0(dirname(project),"/demoSMLX/Simulation/populationParameters.txt"))
plotSAEM(res,paramToPlot = c("delta_S_pop","phi_S_pop","delta_AB_pop"),trueValue=trueValue)
## End(Not run)
[Package REMixed version 0.1.0 Index]