rba_enrichr_add_background {rbioapi}R Documentation

Upload Background Gene-List to Enrichr

Description

In addition to the main gene list, you can also submit a background gene list to Enrichr. This gene list can be used later to compute the statistics of the enrichment analysis.

Usage

rba_enrichr_add_background(background_genes, ...)

Arguments

background_genes

A character vector of Entrez gene symbols of the background genes.

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Details

Please note that rba_enrichr provides a one-step and more convenient way to automatically handle this and other required function calls needed to perform gene set enrichment analysis with Enrichr.

Value

A list with the unique IDs for your uploaded background gene list.

Corresponding API Resources

"POST https://maayanlab.cloud/speedrichr/api/addbackground"

References

See Also

rba_enrichr

Other "Enrichr": rba_enrichr(), rba_enrichr_add_list(), rba_enrichr_enrich(), rba_enrichr_gene_map(), rba_enrichr_libs(), rba_enrichr_view_list()

Examples


my_background_genes <- c(
"NSUN3", "POLRMT", "NLRX1", "SFXN5", "ZC3H12C", "SLC25A39", "ARSG",
"DEFB29", "PCMTD2", "ACAA1A", "LRRC1", "2810432D09RIK", "SEPHS2",
"SAC3D1", "TMLHE", "LOC623451", "TSR2", "PLEKHA7", "GYS2", "ARHGEF12",
"HIBCH", "LYRM2", "ZBTB44", "ENTPD5", "RAB11FIP2", "LIPT1",
"INTU", "ANXA13", "KLF12", "SAT2", "GAL3ST2", "VAMP8", "FKBPL",
"AQP11", "TRAP1", "PMPCB", "TM7SF3", "RBM39", "BRI3", "KDR", "ZFP748",
"NAP1L1", "DHRS1", "LRRC56", "WDR20A", "STXBP2", "KLF1", "UFC1",
"CCDC16", "9230114K14RIK", "RWDD3", "2610528K11RIK")

rba_enrichr_add_background(background_genes = my_background_genes)



[Package rbioapi version 0.8.3 Index]