legacy_decode19 {ibdsim2}R Documentation

Legacy version of the decode19 map

Description

A legacy version of the built-in human recombination map, based on Halldorsson et al., 2019. The implementation of this map used in ibdsim2 was updated in v2.3.0, adding the physical endpoint of each chromosome (this was previously lacking), and using a better thinning algorithm to reduce the raw data given by Halldorsson et al. (2019). See also loadMap().

Usage

legacy_decode19

Format

A genomeMap object: a list of 23 chromMap objects. Each chromMap is a list containing two numeric matrices, named male and female, and carries these attributes:

Examples

loadMap("decode19")         # new
loadMap("legacy_decode19")  # legacy

[Package ibdsim2 version 2.3.0 Index]