readARS_xl {siera} | R Documentation |
Ingest ARS (Analysis Results Standard) metadata, produce ARD (Analysis Results Dataset) code for each output
Description
Ingest ARS (Analysis Results Standard) metadata, and meta-programme R scripts that could be run as-is to produce Analysis Results Datasets when ingesting ADaM datasets
Usage
readARS_xl(
ARS_path,
output_path = tempdir(),
adam_path = tempdir(),
spec_output = "",
spec_analysis = ""
)
Arguments
ARS_path |
A file containing ARS metadata for a reporting event |
output_path |
Path to store .R ARD scripts |
adam_path |
Path to folder containing ADaM datasets, to be run in ARD program |
spec_output |
The output ID for a specific output to be run from the metadata |
spec_analysis |
The analysis ID for a specific analysis to be run from the metadata |
Value
R programmes generating ARDs - one for each output (or analysis from an output) specified in the ARS metadata
Examples
# path to file containing ARS metadata
ARS_path <- ARS_example("Common_Safety_Displays_cards.xlsx")
# output path for R programs
output_dir = tempdir()
# folder containing ADaM datasets
adam_folder = tempdir()
# run function, write to temp directory
readARS_xl(ARS_path, output_dir, adam_folder)
[Package siera version 0.4.0 Index]