MzQCcvParameter {rmzqc} | R Documentation |
A controlled vocabulary parameter, as detailed in the OBO file
Description
A controlled vocabulary parameter, as detailed in the OBO file
A controlled vocabulary parameter, as detailed in the OBO file
Public fields
accession
Accession number identifying the term within its controlled vocabulary.
name
Name of the controlled vocabulary term describing the parameter.
value
(optional) Value of the parameter.
description
(optional) Definition of the controlled vocabulary term.
Methods
Public methods
Method new()
Constructor
Usage
MzQCcvParameter$new( accession = NA_character_, name = NA_character_, value = NA, description = NA_character_ )
Arguments
accession
String value for initialization of field accession
name
String value for initialization of field name
value
Optional value for initialization of field value
description
Optional string value for initialization of field description
Method isValid()
Verifies validity of the object
Usage
MzQCcvParameter$isValid(context = "MzQCcvParameter")
Arguments
context
Optional string describing location in mzQC structure that is used for more informative warning texts.
Method toJSON()
Creates JSON file from this object.
Usage
MzQCcvParameter$toJSON(...)
Arguments
...
Optional parameters for jsonlite:::asJSON()
Method fromData()
Sets data for this object from plain named lists of R objects
Usage
MzQCcvParameter$fromData(data, context = "MzQCcvParameter")
Arguments
data
A datastructure of R lists/arrays as obtained by 'jsonlite::fromJSON()'
context
Optional string describing location in mzQC structure that is used for more informative warning texts.
Method clone()
The objects of this class are cloneable with this method.
Usage
MzQCcvParameter$clone(deep = FALSE)
Arguments
deep
Whether to make a deep clone.
Examples
MzQCcvParameter$new("MS:4000070",
"retention time acquisition range",
c(0.2959, 5969.8172))
isValidMzQC(MzQCcvParameter$new("MS:0000000"))