calc_network_R |
Calculate the reproduction number (R) for a (heterogeneous) network |
constants |
Constants used in 'superspreading' |
dpoislnorm |
Density of the Poisson-lognormal compound distribution |
dpoisweibull |
Density of the Poisson-Weibull compound distribution |
FINITE_INF |
Constants used in 'superspreading' |
ic_tbl |
Helper function to create a model comparison table |
NSIM |
Constants used in 'superspreading' |
ppoislnorm |
Cumulative distribution function of the Poisson-lognormal compound distribution |
ppoisweibull |
Cumulative distribution function of the Poisson-Weibull compound distribution |
probability_contain |
Probability that an outbreak will be contained |
probability_emergence |
Calculate the probability a disease will emerge and cause a sustained outbreak (R > 1) based on R and initial cases |
probability_epidemic |
Calculate the probability a disease will cause an outbreak based on R, k and initial cases |
probability_extinct |
Calculate the probability a branching process will go extinct based on R, k and initial cases |
proportion_cluster_size |
Estimate what proportion of new cases originated within a transmission event of a given size |
proportion_transmission |
Estimate what proportion of cases cause a certain proportion of transmission |