run_fgsea {ggpicrust2}R Documentation

Run fast GSEA implementation

Description

Run fast GSEA implementation

Usage

run_fgsea(ranked_list, gene_sets, nperm = 1000, min_size = 10, max_size = 500)

Arguments

ranked_list

A named vector of ranking statistics

gene_sets

A list of pathway gene sets

nperm

An integer specifying the number of permutations

min_size

An integer specifying the minimum gene set size

max_size

An integer specifying the maximum gene set size

Value

A data frame of fgsea results


[Package ggpicrust2 version 2.3.2 Index]