write_biocompute {whirl}R Documentation

Create biocompute logs

Description

BioCompute is a standard for logs of programs for for Bioinformatics Computational Analyses.

The BioCompute object is a json log that can be created based on the output of run().

Usage

write_biocompute(queue = run("_whirl.yml"), path = "bco.json", ...)

Arguments

queue

Result from run().

path

A character string specifying the file path to write BioCompute log to.

...

Additional arguments parsed to jsonlite::write_json(). Note always uses auto_unbox = TRUE.

Details

The object consists of the following domains:

See the BioCompute Object Portal and the BioCompute Objects Wiki for more information.

Value

(invisible) list of the biocompute domains and their content.


[Package whirl version 0.3.0 Index]