BP_GetFittedParameters {BoneProfileR} | R Documentation |
Return the fitted parameters
Description
Return the fitted parameters or complete object.
Usage
BP_GetFittedParameters(
bone,
analysis = 1,
return.all = FALSE,
ML = TRUE,
periodic = FALSE,
type = "global"
)
Arguments
bone |
The bone image to be used |
analysis |
Name or rank of analysis |
return.all |
If TRUE, return the complete object |
ML |
If TRUE, return the ML estimate and the SE ; if FALSE, returns the MCMC estimate |
periodic |
If TRUE, the periodic model is used (depreciated, use type) |
type |
Can be "global", "radial", or "periodic" |
Details
BP_GetFittedParameters returns the fitted parameters
Value
The fitted parameters
Author(s)
Marc Girondot marc.girondot@gmail.com
See Also
Other BoneProfileR:
BP_AutoFit()
,
BP_ChooseBackground()
,
BP_ChooseCenter()
,
BP_ChooseForeground()
,
BP_DetectBackground()
,
BP_DetectCenters()
,
BP_DetectForeground()
,
BP_DuplicateAnalysis()
,
BP_EstimateCompactness()
,
BP_FitBayesianCompactness()
,
BP_FitBayesianPeriodicCompactness()
,
BP_FitMLCompactness()
,
BP_FitMLPeriodicCompactness()
,
BP_FitMLRadialCompactness()
,
BP_ListAnalyses()
,
BP_LnLCompactness()
,
BP_OpenImage()
,
BP_Report()
,
Erinaceus_europaeus
,
plot.BoneProfileR()
,
summary.BoneProfileR()
Examples
## Not run:
# Not run:
library(BoneProfileR)
path_Hedgehog <- system.file("extdata", "Erinaceus_europaeus_fem_2-1_small.png",
package = "BoneProfileR")
bone <- BP_OpenImage(file=path_Hedgehog)
bone <- BP_DetectBackground(bone=bone, analysis="logistic")
bone <- BP_DetectForeground(bone=bone, analysis="logistic")
bone <- BP_DetectCenters(bone=bone, analysis="logistic")
bone <- BP_EstimateCompactness(bone, analysis="logistic")
bone <- BP_FitMLCompactness(bone, analysis="logistic")
BP_GetFittedParameters(bone, analysis="logistic")
## End(Not run)