knock.in {gemR} | R Documentation |
Knock-in and knock-out of effect(s)
Description
Convenience functions to apply to GEM objects to isolate/extract (knock-in) one or more effects (and possibly residuals) or to remove (knock-out) one or more effects.
Usage
knock.in(object, effect, residuals = TRUE)
knock.out(object, effect, residuals = TRUE)
Arguments
object |
GEM object. |
effect |
Name or number of effect (character or numeric vector). |
residuals |
Logical indicating if residuals should be added (default = TRUE). |
Value
A data.frame
of ER values where effects have been knocked in
(isolated/extracted from data) or knocked out (removed from data).
Examples
data(MS, package = "gemR")
gem <- GEM(proteins ~ MS * group, data = MS)
# Extract interaction between 'MS' and 'group
ER.isolated <- knock.in(gem, 'MS:group')
# Remove main effect of 'group'
ER.cleaned <- knock.out(gem, 'group')
[Package gemR version 1.2.1 Index]