strip_sequence_DIANN {PepMapViz} | R Documentation |
Strip sequence from DIANN outputs
Description
This function takes DIANN output containing a column with peptide sequences to be stripped and converts it into a new dataframe with the stripped sequence
Usage
strip_sequence_DIANN(data, column, convert_column)
Arguments
data |
A dataframe with a column containing peptide sequences to be stripped |
column |
The name of the column containing the peptide sequences to be stripped. |
convert_column |
The name of the column where the stripped sequences will be stored. |
Value
A dataframe with a column containing stripped sequence
Examples
library(data.table)
data <- data.table(
Modified.Sequence = c(
"AAAAGPGAALS(UniMod:21)PRPC(UniMod:4)DSDPATPGAQSPK",
"AAAASAAEAGIATTGTEDSDDALLK",
"AAAAALSGSPPQTEKPT(UniMod:21)HYR"
),
Condition = c("A", "B", "B")
)
column <- 'Modified.Sequence'
convert_column <- 'Sequence'
converted_data <- strip_sequence_DIANN(data, column, convert_column)
[Package PepMapViz version 1.1.0 Index]