calculate_all_Area | Calculate Area/Intensity for the whole input sequence dataframe |
calculate_all_PSM | Calculate Spectra Count (PSM) for the whole input sequence dataframe |
calculate_Area | Calculate Area/Intensity for one row of the input sequence dataframe |
calculate_PSM | Calculate Spectra Count (PSM) for one row of the input sequence dataframe |
combine_files_from_folder | Combine CSV and TXT Files from a Folder |
convert_to_regex_pattern | Convert Peptide Sequence to Regex Pattern |
create_peptide_plot | Create a peptide Plot |
match_and_calculate_positions | Match peptide sequence with provided sequence and calculate positions |
obtain_mod | Obtain post translational modification(PTM) information from Peptide data based on the specified data type |
obtain_mod_Comet | Obtain modification information from Peptide data generated by Comet |
obtain_mod_DIANN | Obtain modification information from Peptide data generated by DIA-NN |
obtain_mod_Maxquant | Obtain modification information from Peptide data generated by Maxquant |
obtain_mod_MSFragger | Obtain modification information from Peptide data generated by MSFragger |
obtain_mod_mzIdenML | Obtain modification information from Peptide data generated by mzIdenML |
obtain_mod_mzTab | Obtain modification information from Peptide data generated by mzTab |
obtain_mod_PEAKS | Obtain modification information from Peptide data generated by PEAKS |
obtain_mod_Skyline | Obtain modification information from Peptide data generated by Skyline |
obtain_mod_Spectronaut | Obtain modification information from Peptide data generated by Spectronaut |
peptide_quantification | Peptide Quantification |
run_pepmap_app | Launch PepMapViz Shiny Application |
strip_sequence | Strip peptide sequences based on the specified data type |
strip_sequence_Comet | Strip sequence from Comet outputs |
strip_sequence_DIANN | Strip sequence from DIANN outputs |
strip_sequence_Maxquant | Strip sequence from Maxquant outputs |
strip_sequence_MSFragger | Strip sequence from MSFragger outputs |
strip_sequence_PEAKS | Strip sequence from PEAKS outputs |
strip_sequence_Skyline | Strip sequence from Skyline outputs |
strip_sequence_Spectronaut | Strip sequence from Spectronaut outputs |