strip_sequence_PEAKS {PepMapViz} | R Documentation |
Strip sequence from PEAKS outputs
Description
This function takes PEAKS output containing a column with peptide sequences to be stripped and converts it into a new dataframe with the stripped sequence
Usage
strip_sequence_PEAKS(data, column, convert_column)
Arguments
data |
A dataframe with a column containing peptide sequences to be stripped |
column |
The name of the column containing the peptide sequences to be stripped. |
convert_column |
The name of the column where the stripped sequences will be stored. |
Value
A dataframe with a column containing stripped sequence
Examples
library(data.table)
data <- data.table(
Peptide = c(
"AAN(+0.98)Q(-0.98)RGSLYQCDYSTGSC(+57.02)EPIR",
"K.AAQQTGKLVHANFGT.K",
"K.(+0.98)AATVTGKLVHANFGT.K"
),
Condition = c("A", "B", "B")
)
column <- "Peptide"
convert_column <- "Sequence"
converted_data <- strip_sequence_PEAKS(data, column, convert_column)
[Package PepMapViz version 1.1.0 Index]