verifyAlleleANHIG {SSHAARP} | R Documentation |
Verifies the allele entered is present in the IMGT protein alignments
Description
Verifies the allele entered is present in IMGT protein alignments
Usage
verifyAlleleANHIG(allele, filename, alignments)
Arguments
allele |
An allele name written in the IPD-IMGT/HLA Database format. |
filename |
The full file path of the user specified dataset if the user wishes to use their own file, or the pre-bundled Solberg dataset. User provided datasets must be a .dat, .txt, or.csv file, and must conform to the structure and format of the Solberg dataset. |
alignments |
A list object of sub-lists of data frames of protein alignments for the HLA and HLA-region genes supported in the ANHIG/IMGTHLA GitHub Repository. Alignments will always be the most recent version IPD-IMGT/HLA Database version. |
Value
TRUE if allele is present in the IMGTprotalignment object. Otherwise, a vector containing FALSE and an error message is returned.
Note
For internal SSHAARP use only.