checkAlleleSyntax | Check allele syntax |
checkHaplotypeSyntax | Check haplotype syntax |
checkLocusDataset | Check locus validity and if the locus is present in the user specified dataset |
checkMotifSyntax | Check motif syntax |
checkPosition | Checks if amino acid positions in motif exist |
dataSubset | Dataset manipulation for motifs and alleles |
dataSubsetHaplo | Dataset manipulation for haplotypes |
findMotif | Returns an alignment data frame of alleles that share a specific amino acid motif |
getVariantInfo | Locus and allele or motif extraction for motifs, allele, or haplotype mapping |
isNamePresent | Checks if name portion of entered variant is present |
mock_haplotype_dataset | Mock Haplotype Dataset |
PALM | Population Allele Locating Mapmaker |
readFilename | Designates dataset by either reading in file the user has provided, or using the Solberg dataset or mock haplotype dataset |
solberg_dataset | Solberg Dataset |
validateVariantType | validateVariantType |
verifyAlleleANHIG | Verifies the allele entered is present in the IMGT protein alignments |
verifyAlleleANHIGHaplo | Verifies the alleles in entered haplotype are present in IMGTprotalignments |
verifyAlleleDataset | Verifies the allele entered is present in specified dataset |