checkHaplotypeSyntax {SSHAARP} | R Documentation |
Check haplotype syntax
Description
Checks if alleles in a haplotype have correct syntax and an appropriate number of fields.
Usage
checkHaplotypeSyntax(haplotype, filename)
Arguments
haplotype |
A haplotype where allele names are written in the IPD-IMGT/HLA Database format, and have 1-4 fields. Alleles in haplotypes must be delimited by "~". |
filename |
The full file path of the user specified dataset if the user wishes to use their own file, or pre-bundled mock haplotype dataset. User provided datasets must be a .dat, .txt, or.csv file, and must conform to the structure and format of the mock haplotype dataset bundled with the package. |
Value
TRUE if all alleles in entered haplotype have correct syntax and appropriate number of fields. Otherwise, a vector containing FALSE and an error message is returned.
Note
For internal SSHAARP use only.
[Package SSHAARP version 2.0.8 Index]