DAISIE_plot_extinction {DAISIE} | R Documentation |
Plots extinction rate function through time
Description
Plots extinction rate function through time
Usage
DAISIE_plot_extinction(
total_time,
area_pars,
peak,
mu,
hyper_pars,
island_ontogeny = "beta",
sea_level = "const",
removed_timepoints,
resolution,
extcutoff = 1000
)
Arguments
total_time |
Numeric defining the length of the simulation in time units. |
area_pars |
A named list containing area and sea level parameters as
created by
|
peak |
A numeric value specifying the peakiness (or shaprness) of the
ontogeny curve. Higher values imply peakier ontogeny. This value is
internally calculated by |
mu |
A numeric with the per capita extinction rate. |
hyper_pars |
A named list of numeric hyperparameters for the rate
calculations as returned by
|
island_ontogeny |
In |
sea_level |
In |
removed_timepoints |
Positive integer with number of first datapoints to be removed from rate plots (to prevent Inf) |
resolution |
numeric indicating resolution of plot. Should be < 0. |
extcutoff |
A numeric with the cutoff for the the maximum extinction rate preventing it from being too large and slowing down simulation. |
Value
per capita extinction rate through time plot and dataframe with extinction at corresponding time
Author(s)
Pedro Neves