tableLargeScaleCharacteristics {CohortCharacteristics} | R Documentation |
Explore and compare the large scale characteristics of cohorts
Description
Explore and compare the large scale characteristics of cohorts
Usage
tableLargeScaleCharacteristics(
result,
compareBy = NULL,
hide = c("type"),
smdReference = NULL,
type = "reactable"
)
Arguments
result |
A summarised_result object. |
compareBy |
A column to compare by it can be a choice between "cdm_name", "cohort_name", strata columns, "variable_level" (window) and "type". It can be left NULL for no comparison. |
hide |
Columns to hide. |
smdReference |
Level of reference for the Standardised Mean Differences
(SMD), it has to be one of the values of |
type |
Type of table to generate, it can be either |
Value
A visual table.
Examples
## Not run:
library(CohortCharacteristics)
library(duckdb)
library(CDMConnector)
library(dplyr, warn.conflicts = FALSE)
con <- dbConnect(duckdb(), eunomiaDir())
cdm <- cdmFromCon(con = con, cdmSchema = "main", writeSchema = "main")
cdm <- generateConceptCohortSet(
cdm = cdm,
conceptSet = list(viral_pharyngitis = 4112343),
name = "my_cohort"
)
result <- summariseLargeScaleCharacteristics(
cohort = cdm$my_cohort,
window = list(c(-Inf, -1), c(0, 0), c(1, Inf)),
episodeInWindow = "drug_exposure"
)
tableLargeScaleCharacteristics(result)
tableLargeScaleCharacteristics(result,
compareBy = "variable_level")
tableLargeScaleCharacteristics(result,
compareBy = "variable_level",
smdReference = "-inf to -1")
cdmDisconnect(cdm)
## End(Not run)
[Package CohortCharacteristics version 1.0.0 Index]