exitAtDeath {CohortConstructor} | R Documentation |
Set cohort end date to death date
Description
This functions changes cohort end date to subject's death date. In the case were this generates overlapping records in the cohort, those overlapping entries will be merged.
Usage
exitAtDeath(
cohort,
cohortId = NULL,
requireDeath = FALSE,
name = tableName(cohort),
.softValidation = FALSE
)
Arguments
cohort |
A cohort table in a cdm reference. |
cohortId |
Vector identifying which cohorts to modify (cohort_definition_id or cohort_name). If NULL, all cohorts will be used; otherwise, only the specified cohorts will be modified, and the rest will remain unchanged. |
requireDeath |
If TRUE, subjects without a death record will be dropped, while if FALSE their end date will be left as is. |
name |
Name of the new cohort table created in the cdm object. |
.softValidation |
Whether to perform a soft validation of consistency. If set to FALSE four additional checks will be performed: 1) a check that cohort end date is not before cohort start date, 2) a check that there are no missing values in required columns, 3) a check that cohort duration is all within observation period, and 4) that there are no overlapping cohort entries |
Value
The cohort table.
Examples
library(PatientProfiles)
library(CohortConstructor)
cdm <- mockPatientProfiles()
cdm$cohort1 |> exitAtDeath()