get_read_counts {demulticoder}R Documentation

Final inventory of read counts after each step from input to removal of chimeras. This function deals with if you have more than one sample. TODO optimize for one sample

Description

Final inventory of read counts after each step from input to removal of chimeras. This function deals with if you have more than one sample. TODO optimize for one sample

Usage

get_read_counts(
  asv_abund_matrix,
  temp_directory_path,
  output_directory_path,
  metabarcode
)

Arguments

asv_abund_matrix

The final abundance matrix containing amplified sequence variants


[Package demulticoder version 0.1.2 Index]