assign_taxonomyDada2 {demulticoder} | R Documentation |
Assign taxonomy
Description
Assign taxonomy
Usage
assign_taxonomyDada2(
asv_abund_matrix,
temp_directory_path,
metabarcode = "metabarcode",
barcode_params
)
Arguments
asv_abund_matrix |
The final abundance matrix containing amplified sequence variants. |
temp_directory_path |
User-defined temporary directory to output unfiltered, trimmed, and filtered read directories throughout the workflow |
metabarcode |
The metabarcode used throughout the workflow (applicable options: 'rps10', 'its', 'r16S', 'other1', other2') |
[Package demulticoder version 0.1.2 Index]