filter_and_trim {demulticoder}R Documentation

Wrapper function for filterAndTrim function from 'DADA2', to be used after primer trimming

Description

Wrapper function for filterAndTrim function from 'DADA2', to be used after primer trimming

Usage

filter_and_trim(
  output_directory_path,
  temp_directory_path,
  cutadapt_data_barcode,
  barcode_params,
  barcode
)

Arguments

output_directory_path

The path to the directory where resulting files are output

cutadapt_data_barcode

Metabarcode-specific FASTQ read files trimmed of primers

Value

Filtered and trimmed reads


[Package demulticoder version 0.1.2 Index]