Simultaneous Analysis of Multiplexed Metabarcodes


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Documentation for package ‘demulticoder’ version 0.1.2

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assign_tax Assign taxonomy functions
convert_asv_matrix_to_objs Filter ASV abundance matrix and convert to 'taxmap' and 'phyloseq' objects
cut_trim Main command to trim primers using 'Cutadapt' and core 'DADA2' functions
make_asv_abund_matrix Make an amplified sequence variant (ASV) abundance matrix for each of the input barcodes
prepare_reads Prepare reads for primer trimming using 'Cutadapt'