read_fastq {demulticoder} | R Documentation |
Takes in the FASTQ files from the user and creates a data.frame
with the
paths to files that will be created and used in the future. Included in a
larger 'read_prefilt_fastq' function.
Description
Takes in the FASTQ files from the user and creates a data.frame
with the
paths to files that will be created and used in the future. Included in a
larger 'read_prefilt_fastq' function.
Usage
read_fastq(data_directory_path, temp_directory_path)
Arguments
data_directory_path |
The path to the directory containing raw FASTQ (forward and reverse reads), metadata.csv, and primerinfo_params.csv files. |
temp_directory_path |
User-defined temporary directory to output unfiltered, trimmed, and filtered read directories throughout the workflow. |
Value
A data.frame
with the FASTQ file paths, primer orientations and
sequences, and parsed sample names.
[Package demulticoder version 0.1.2 Index]