countOverlap {demulticoder}R Documentation

Count overlap to see how well the reads were merged

Description

Count overlap to see how well the reads were merged

Usage

countOverlap(data_tables, merged_reads, barcode, output_directory_path)

Arguments

data_tables

The data tables containing the paths to read files, metadata, and metabarcode information with associated primer sequences

merged_reads

Intermediate merged read RData file

barcode

The metabarcode used throughout the workflow (applicable options: 'rps10', 'its', 'r16S', 'other1', other2')

output_directory_path

The path to the directory where resulting files are output

Value

A plot describing how well reads merged and information on overlap between reads


[Package demulticoder version 0.1.2 Index]