countOverlap {demulticoder} | R Documentation |
Count overlap to see how well the reads were merged
Description
Count overlap to see how well the reads were merged
Usage
countOverlap(data_tables, merged_reads, barcode, output_directory_path)
Arguments
data_tables |
The data tables containing the paths to read files, metadata, and metabarcode information with associated primer sequences |
merged_reads |
Intermediate merged read RData file |
barcode |
The metabarcode used throughout the workflow (applicable options: 'rps10', 'its', 'r16S', 'other1', other2') |
output_directory_path |
The path to the directory where resulting files are output |
Value
A plot describing how well reads merged and information on overlap between reads
[Package demulticoder version 0.1.2 Index]