format_db_16S {demulticoder} | R Documentation |
An 16S database that has modified headers and is output in the reference_databases folder
Description
An 16S database that has modified headers and is output in the reference_databases folder
Usage
format_db_16S(
data_tables,
data_path,
output_directory_path,
temp_directory_path,
db_16S
)
Arguments
data_tables |
The data tables containing the paths to read files, metadata, and metabarcode information with associated primer sequences |
data_path |
Path to the data directory |
output_directory_path |
The path to the directory where resulting files are output |
temp_directory_path |
User-defined temporary directory to output unfiltered, trimmed, and filtered read directories throughout the workflow |
db_16S |
The SILVA 16S rRNA reference database provided by the user |
Value
The SILVA 16S rRNA database with modified headers
[Package demulticoder version 0.1.2 Index]