plot_post_trim_qc {demulticoder}R Documentation

Wrapper script for plotQualityProfile after trim steps and primer removal.

Description

Wrapper script for plotQualityProfile after trim steps and primer removal.

Usage

plot_post_trim_qc(
  cutadapt_data,
  output_directory_path,
  n = 5e+05,
  barcode_params
)

Arguments

cutadapt_data

FASTQ read files trimmed of primers

output_directory_path

The path to the directory where resulting files are output

n

(Optional). Default 500,000. The number of records to sample from the fastq file.

Value

Quality profiles of reads after primer trimming


[Package demulticoder version 0.1.2 Index]