get_pre_primer_hits {demulticoder}R Documentation

Get primer counts for reach sample before primer removal and trimming steps

Description

Get primer counts for reach sample before primer removal and trimming steps

Usage

get_pre_primer_hits(primer_data, fastq_data, output_directory_path)

Arguments

primer_data

Primer data.frame created using the orient_primers function to parse information on forward and reverse primer sequences.

fastq_data

A data.frame containing the read file paths and the direction of the reads by sample

output_directory_path

The path to the directory where resulting files are output

Value

The number of reads in which the primer is found

The number of reads in which the primer is found


[Package demulticoder version 0.1.2 Index]