assign_taxonomyDada2 {demulticoder}R Documentation

Assign taxonomy

Description

Assign taxonomy

Usage

assign_taxonomyDada2(
  asv_abund_matrix,
  temp_directory_path,
  metabarcode = "metabarcode",
  barcode_params
)

Arguments

asv_abund_matrix

The final abundance matrix containing amplified sequence variants.

temp_directory_path

User-defined temporary directory to output unfiltered, trimmed, and filtered read directories throughout the workflow

metabarcode

The metabarcode used throughout the workflow (applicable options: 'rps10', 'its', 'r16S', 'other1', other2')


[Package demulticoder version 0.1.2 Index]