format_db_16S {demulticoder}R Documentation

An 16S database that has modified headers and is output in the reference_databases folder

Description

An 16S database that has modified headers and is output in the reference_databases folder

Usage

format_db_16S(
  data_tables,
  data_path,
  output_directory_path,
  temp_directory_path,
  db_16S
)

Arguments

data_tables

The data tables containing the paths to read files, metadata, and metabarcode information with associated primer sequences

data_path

Path to the data directory

output_directory_path

The path to the directory where resulting files are output

temp_directory_path

User-defined temporary directory to output unfiltered, trimmed, and filtered read directories throughout the workflow

db_16S

The SILVA 16S rRNA reference database provided by the user

Value

The SILVA 16S rRNA database with modified headers


[Package demulticoder version 0.1.2 Index]