format_db_other1 {demulticoder} | R Documentation |
An other, user-specified database that is initially in the format specified by 'DADA2' with header containing taxonomic levels (kingdom down to species, separated by semi-colons)
Description
An other, user-specified database that is initially in the format specified by 'DADA2' with header containing taxonomic levels (kingdom down to species, separated by semi-colons)
Usage
format_db_other1(
data_tables,
data_path,
output_directory_path,
temp_directory_path,
db_other1
)
Arguments
data_tables |
The data tables containing the paths to read files, metadata, and metabarcode information with associated primer sequences |
data_path |
Path to the data directory |
output_directory_path |
The path to the directory where resulting files are output |
temp_directory_path |
User-defined temporary directory to output unfiltered, trimmed, and filtered read directories throughout the workflow |
db_other1 |
A reference database other than SILVA, UNITE, or oomyceteDB (assumes format is like SILVA DB entries) |
Value
The database with modified headers
[Package demulticoder version 0.1.2 Index]