format_db_other1 {demulticoder}R Documentation

An other, user-specified database that is initially in the format specified by 'DADA2' with header containing taxonomic levels (kingdom down to species, separated by semi-colons)

Description

An other, user-specified database that is initially in the format specified by 'DADA2' with header containing taxonomic levels (kingdom down to species, separated by semi-colons)

Usage

format_db_other1(
  data_tables,
  data_path,
  output_directory_path,
  temp_directory_path,
  db_other1
)

Arguments

data_tables

The data tables containing the paths to read files, metadata, and metabarcode information with associated primer sequences

data_path

Path to the data directory

output_directory_path

The path to the directory where resulting files are output

temp_directory_path

User-defined temporary directory to output unfiltered, trimmed, and filtered read directories throughout the workflow

db_other1

A reference database other than SILVA, UNITE, or oomyceteDB (assumes format is like SILVA DB entries)

Value

The database with modified headers


[Package demulticoder version 0.1.2 Index]