plot_rank_scatter {gimap} | R Documentation |
Rank plot for target-level GI scores
Description
This plot is meant to be functionally equivalent to Fig 5a (for HeLa, equivalent of Fig 3c for PC9). Rank plot of target-level GI scores. Dashed horizontal lines are for GI scores of 0.25 and -0.5
Usage
plot_rank_scatter(gimap_dataset, reps_to_drop = "")
Arguments
gimap_dataset |
A special dataset structure that is originally setup using 'setup_data()' and has had gi scores calculated with 'calc_gi()'. |
reps_to_drop |
Names of replicates that should be not plotted (Optional) |
Value
A ggplot2 rankplot of the target level genetic interaction scores.
Examples
gimap_dataset <- get_example_data("gimap") %>%
gimap_filter() %>%
gimap_annotate(cell_line = "HELA") %>%
gimap_normalize(
timepoints = "day"
) %>%
calc_gi()
# To plot results
plot_exp_v_obs_scatter(gimap_dataset)
plot_rank_scatter(gimap_dataset)
plot_volcano(gimap_dataset)
[Package gimap version 1.1.1 Index]