generate_all_link_phases_elim_equivalent_haplo {mappoly} | R Documentation |
Eliminate equivalent linkage phases
Description
Generates all possible linkage phases between two blocks of markers (or a block and a marker), eliminating equivalent configurations, i.e. configurations with the same likelihood and also considering the two-point information (shared alleles)
Usage
generate_all_link_phases_elim_equivalent_haplo(
block1,
block2,
rf.matrix,
ploidy,
max.inc = NULL
)
Arguments
block1 |
submap with markers of the first block |
block2 |
submap with markers of the second block, or just a single marker identified by its name |
rf.matrix |
matrix obtained with the function |
ploidy |
ploidy level (i.e. 4, 6 and so on) |
max.inc |
maximum number of allowed inconsistencies (default = NULL: don't check inconsistencies) |
Author(s)
Marcelo Mollinari, mmollin@ncsu.edu and Gabriel Gesteira, gdesiqu@ncsu.edu
[Package mappoly version 0.4.1 Index]