generate_all_link_phase_elim_equivalent {mappoly} | R Documentation |
Generate all possible linkage phases in matrix form given the dose and the number of shared alleles between a inserted marker and a pre-computed linkage configuration.
Description
Generate all possible linkage phases in matrix form given the dose and the number of shared alleles between a inserted marker and a pre-computed linkage configuration.
Usage
generate_all_link_phase_elim_equivalent(X, d, sh, ploidy, k1, k2)
Arguments
X |
a list of matrices whose columns represent homologous chromosomes and the rows represent markers. Each element of the list represents a linkage phase configuration. |
d |
the dosage of the inserted marker |
sh |
the number of shared alleles between k1 (marker already present on the sequence) and k2 (the inserted marker) |
ploidy |
the ploidy level |
k1 |
marker already present on the sequence |
k2 |
inserted marker |
Value
a unique list of matrices representing linkage phases
[Package mappoly version 0.4.1 Index]