map_summary {viewpoly} | R Documentation |
Gets summary information from map. Adapted from MAPpoly
Description
Gets summary information from map. Adapted from MAPpoly
Usage
map_summary(left.lim = 0, right.lim = 5, ch = 1, maps, d.p1, d.p2)
Arguments
left.lim |
covered window in the linkage map start position |
right.lim |
covered window in the linkage map end position |
ch |
linkage group ID |
maps |
list containing a vector for each linkage group markers with marker positions (named with marker names) |
d.p1 |
list containing a data.frame for each group with parent 1 dosages. The data.frame contain the columns: 1) character vector with chromosomes ID; 2) Character vector with markers ID; 3) Character vector with parent ID; 4) numerical vector with dosage |
d.p2 |
list containing a data.frame for each group with parent 2 dosages. See d.p1 parameter description |
Value
list with linkage map information: doses; number snps by group; cM per snp; map size; number of linkage groups
[Package viewpoly version 0.4.1 Index]