EcoEDGE {bivariatemaps} | R Documentation |
EcoEDGE: Ecologically and Evolutionarily Distinct and Globally Endangered
Description
Calculates ED, EcoD, EDGE, EcoDGE, and EcoEDGE, from Red List Categories, a phylogenetic tree, and a functional dendrogram.
Usage
EcoEDGE(
category,
phylo,
func,
funcweight = 0.5,
phyloweight = 0.5,
polytomy = "isaac"
)
Arguments
category |
data frame where the first column contains the red list categories of species. |
phylo |
phylogenetic tree of species. |
func |
functional dendrogram of species. |
funcweight |
weight of ecological distinctiveness on the calculation of EcoEDGE scores. |
phyloweight |
weight of evolutionary distinctiveness on the calculation of EcoEDGE scores. Sum of funcweight and phyloweight must be equal to 1. |
polytomy |
how to handle polytomies in the phylogeny and the functional dendrogram. See "ed.calc" function for details. |
Value
A table with calculated values for each variable.
Examples
# https://rfunctions.blogspot.com/2021/03/ecoedge-ecologically-and-evolutionarily.html
[Package bivariatemaps version 1.7 Index]