create_SiFINeT_object {SiFINeT} | R Documentation |
create_SiFINeT_object
Description
The function classifies count data based on thresholds defined by quantile regression
Usage
create_SiFINeT_object(
counts,
gene.name = NULL,
meta.data = NULL,
data.name = NULL,
sparse = FALSE,
rowfeature = TRUE
)
Arguments
counts |
count matrix |
gene.name |
name of the features |
meta.data |
data.frame of meta data |
data.name |
name of dataset |
sparse |
whether the count matrix should be analyzed as sparse matrix |
rowfeature |
whether the count matrix is feature (row) by cell (column) |
Value
a SiFINeT object
[Package SiFINeT version 1.13 Index]