Plant Photobiology Related Functions and Data


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Documentation for package ‘photobiologyPlants’ version 0.6.0

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photobiologyPlants-package photobiologyPlants: Plant Photobiology Related Functions and Data
Betula_ermanii.mspct Spectral data for 'Betula ermanii' leaves
B_G Calculate B:G photon ratio from spectral irradiance.
carotenoids.mspct Absorbance spectra for carotenoids.
chlorophylls.mspct Absorbance spectra for chlorophylls.
chlorophylls_fluorescence.mspct Fluorescence emission spectra for chlorophylls.
CRYs.mspct CRY1, CRY2 and CRY3 absorbance spectra.
ET_ref Evapotranspiration
ET_ref_day Evapotranspiration
leaf_fluorescence.mspct Fluorescence emission spectra of leaves.
McCree_photosynthesis.mspct McCree's action spectra for whole-leaf photosynthesis.
net_irradiance Net radiation flux
Pfr_Ptot Calculate phytochrome photoequilibrium
Pfr_Ptot.default Calculate phytochrome photoequilibrium
Pfr_Ptot.numeric Calculate phytochrome photoequilibrium
Pfr_Ptot.source_spct Calculate phytochrome photoequilibrium
Pfr_Ptot_R_FR Pr:Ptot ratio (photoequilibrium) from R:FR photon ratio.
photobiologyPlants photobiologyPlants: Plant Photobiology Related Functions and Data
PHOTs.mspct PHOT1 and PHOT2 absorbance spectra.
PHYs.mspct Tabulated data for Phytochrome Sigma
phytochrome.spct Tabulated data for Phytochrome Sigma
Phy_reaction_rates Phytochrome reaction rates
Phy_Sigma Phytochrome Sigma as a function of wavelength
Phy_Sigma_FR Pfr Sigma as a function of wavelength
Phy_Sigma_R Pr Sigma as a function of wavelength
psychrometric_constant Water vapour pressure
R_FR Calculate R:FR photon ratio from spectral irradiance.
Solidago_altissima.mspct Spectral optical data for 'Solidago altissima' leaves
UVA1_UV Calculate UVA1:UV photon ratio from spectral irradiance.
UVA2_UV Calculate UVA2:UV photon ratio from spectral irradiance.
UVAlw_UV Calculate UVAlw:UV photon ratio from spectral irradiance.
UVAsw_UV Calculate UVAsw:UV photon ratio from spectral irradiance.
UVA_PAR Calculate UVA:PAR photon ratio from spectral irradiance.
UVA_UV Calculate UVA:UV photon ratio from spectral irradiance.
UVB_PAR Calculate UVB:PAR photon ratio from spectral irradiance.
UVB_UV Calculate UVB:UV photon ratio from spectral irradiance.
UVB_UVA Calculate UVB:UVA photon ratio from spectral irradiance.
UVR8s.mspct UVR8 absorbance spectrum
UV_PAR Calculate UV:PAR photon ratio from spectral irradiance.
water_dp Water vapour pressure
water_fp Water vapour pressure
water_mvc2vp Water vapour pressure
water_RH2vp Water vapour pressure
water_vp2mvc Water vapour pressure
water_vp2RH Water vapour pressure
water_vp_sat Water vapour pressure
water_vp_sat_slope Water vapour pressure
ZTLs.mspct ZTL absorbance spectra.