obtain_coordiantes_for_segments {shinyWGD}R Documentation

Obtain coordinates for segments in a comparison

Description

This function retrieves the coordinates for segments in a comparison based on the provided parameters.

Usage

obtain_coordiantes_for_segments(
  seg_file,
  sp1,
  gff_file1,
  out_file,
  sp2 = NULL,
  gff_file2 = NULL
)

Arguments

seg_file

The file containing segment data.

sp1

The species name for the first genome.

gff_file1

The GFF file for the first genome.

out_file

The output file to store the merged position data.

sp2

The species name for the second genome (optional).

gff_file2

The GFF file for the second genome (optional).

Value

NULL (the results are saved in the output file).


[Package shinyWGD version 1.0.0 Index]