read.wgd_ksd {shinyWGD} | R Documentation |
Read the output file of wgd ksd
Description
Read the output file of wgd ksd
Usage
read.wgd_ksd(
file,
include_outliers = FALSE,
min_ks = 0,
min_aln_len = 0,
min_idn = 0,
min_cov = 0
)
Arguments
file |
The output file of |
include_outliers |
Include outliers or not, default FALSE. |
min_ks |
Minimum Ks value, default 0. |
min_aln_len |
Minimum alignment length, default 0. |
min_idn |
Minimum alignment identity, default 0. |
min_cov |
Minimum alignment coverage, default 0. |
Value
A ksv
object, which is a list including:
-
ks_df
: the data frame that used for following analysis -
ks_dist
: a list including a vector of Ks values in the distribution -
raw_df
: raw data -
filters
: filters that applied to the raw data
[Package shinyWGD version 1.0.0 Index]