read.wgd_ksd {shinyWGD}R Documentation

Read the output file of wgd ksd

Description

Read the output file of wgd ksd

Usage

read.wgd_ksd(
  file,
  include_outliers = FALSE,
  min_ks = 0,
  min_aln_len = 0,
  min_idn = 0,
  min_cov = 0
)

Arguments

file

The output file of ⁠wgd ksd⁠

include_outliers

Include outliers or not, default FALSE.

min_ks

Minimum Ks value, default 0.

min_aln_len

Minimum alignment length, default 0.

min_idn

Minimum alignment identity, default 0.

min_cov

Minimum alignment coverage, default 0.

Value

A ksv object, which is a list including:


[Package shinyWGD version 1.0.0 Index]