create_ksrates_configure_file_based_on_table {shinyWGD}R Documentation

Create Ksrates Configuration File Based on Data Table

Description

This function generates a Ksrates configuration file based on a data table and other parameters.

Usage

create_ksrates_configure_file_based_on_table(
  data_table,
  focal_species,
  newick_tree_file,
  ksrates_conf_file,
  species_info_file,
  working_wd
)

Arguments

data_table

The data table containing information about species, proteomes, and GFF files.

focal_species

The name of the focal species.

newick_tree_file

The path to the Newick tree file.

ksrates_conf_file

The path to the Ksrates configuration file to be generated.

species_info_file

The path to the species information file.

working_wd

A character string specifying the working directory to be used.


[Package shinyWGD version 1.0.0 Index]