getTestRunArgs {mutSignatures} | R Documentation |
Generate Arguments for Running Examples and Mock Runs.
Description
This function generates objects that can be used for running the examples included in the package documentation files, as well as some simple mutSignature analyses. Note that his function is not exported.
Usage
getTestRunArgs(testN = "evaluateStability")
Arguments
testN |
string, name of the function that we want to test |
Details
This is an internal function.
Value
an object (typically, a list) including sample data to run analyses or to test mutSignatures functions.
Author(s)
Damiano Fantini, damiano.fantini@gmail.com
References
More information and examples about mutational signature analysis can be found here:
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GitHub Repo: https://github.com/dami82/mutSignatures/
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More info and examples about the mutSignatures R library: https://www.data-pulse.com/dev_site/mutsignatures/
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Sci Rep paper, introducing mutS: https://www.nature.com/articles/s41598-020-75062-0/
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Oncogene paper, Mutational Signatures Operative in Bladder Cancer: https://www.nature.com/articles/s41388-017-0099-6
WTSI framework: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3588146/