custom_cssls {mutSignatures} | R Documentation |
Custom CSSLS.
Description
This function contributes to solving a nonnegative least square linear problem using normal equations and the fast combinatorial strategy from Van Benthem et al. (2004). This implementation is similar to that included in the NMF R package by Renaud Gaujoux and Cathal Seoighe, and it is tailored to the data used in the mutational signature analysis. For more info, see: https://CRAN.R-project.org/package=NMF
Usage
custom_cssls(CtC, CtA, Pset)
Arguments
CtC |
numeric matrix |
CtA |
numeric matrix |
Pset |
nueric matrix |
Value
a numeric matrix
Examples
x <- mutSignatures:::getTestRunArgs(testN = "custom_cssls")
y <- mutSignatures:::custom_cssls(CtC = x$CtC, CtA = x$CtA, Pset = x$Pset)
y
[Package mutSignatures version 2.1.1 Index]