dataPapioniniVanderpool {MSCquartets}R Documentation

Papionini gene tree dataset

Description

A text file dataset for Papionini containing 1730 gene trees on 7 taxa. This is a subset of the data of Vanderpool et al. (2020).

Format

A text file with 1703 metric Newick gene trees each with 7 leaves labelled:
Cercocebus_atys, Mandrillus_leucophaeus, Papio_anubis, Theropithecus_gelada, Macaca_fascicularis, Macaca_mulatta, Macaca_nemestrina

Details

File is accessed as system.file("extdata","dataPapioniniVanderpool",package="MSCquartets"), for example via the ape command:

gts = read.tree(file=system.file("extdata","dataPapioniniVanderpool",package="MSCquartets"))

Source

doi:10.5061/dryad.rfj6q577d

References

Vanderpool D, Minh BQ, Lanfear R, Hughes D, Murali S, Harris RA, Raveendran M, Muzny DM, Hibbins MS, Williamson RJ, Gibbs RA, Worley KC, Rogers J, Hahn MW (2020). “Primate phylogenomics uncovers multiple rapid radiations and ancient interspecific introgression.” PLOS Biology, 18(12), 1-27. doi:10.1371/journal.pbio.3000954.


[Package MSCquartets version 3.2 Index]