dataPapioniniVanderpool {MSCquartets} | R Documentation |
Papionini gene tree dataset
Description
A text file dataset for Papionini containing 1730 gene trees on 7 taxa. This is a subset of the data of Vanderpool et al. (2020).
Format
A text file with 1703 metric Newick gene trees each with 7 leaves labelled:
Cercocebus_atys, Mandrillus_leucophaeus, Papio_anubis, Theropithecus_gelada,
Macaca_fascicularis, Macaca_mulatta, Macaca_nemestrina
Details
File is accessed as system.file("extdata","dataPapioniniVanderpool",package="MSCquartets")
, for
example via the ape
command:
gts = read.tree(file=system.file("extdata","dataPapioniniVanderpool",package="MSCquartets"))
Source
References
Vanderpool D, Minh BQ, Lanfear R, Hughes D, Murali S, Harris RA, Raveendran M, Muzny DM, Hibbins MS, Williamson RJ, Gibbs RA, Worley KC, Rogers J, Hahn MW (2020). “Primate phylogenomics uncovers multiple rapid radiations and ancient interspecific introgression.” PLOS Biology, 18(12), 1-27. doi:10.1371/journal.pbio.3000954.