'lme4' for Genomic Selection


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Documentation for package ‘lme4GS’ version 0.1

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lme4GS-package lme4 for Genomic Selection
lme4GS lme4 for Genomic Selection
lmerUvcov Fits a linear mixed model with user specified variance covariance-matrices.
lmerUvcov-class User defined variance covariance mixed-effects model fits
maize.G Genomic relationship matrix for maize lines
maize.Pheno Phenotypical data for the maize dataset
ranef-method User defined variance covariance mixed-effects model fits
ranefUvcov Extract the conditional means of the random effects
ranefUvcovNew Obtain BLUPs for new levels of random effects with user specified variance covariance-matrices.
theta_optim Selection of bandwidth parameter for Gaussian and exponential kernels.
wheat.Pedigree Pedigree infomation for 599 wheat lines
wheat.Pheno Phenotypical data for the wheat dataset
wheat.sets Sets for cross validation (CV)
wheat.X Molecular markers