init.enumerate_parsimony {PhylogeneticEM} | R Documentation |
Initialization for the enumeration of parsimonious solutions.
Description
init.enumerate_parsimony
is used in function enumerate_parsimony
,
and initialize the correct data structure.
Usage
init.enumerate_parsimony(phy, clusters, pos)
Arguments
phy |
Input tree. |
clusters |
a vector representing the group of each tip. |
Details
This function returns a list with Nnode + ntaxa entries. Entries corresponding to the tips are initialized with a list of nclus matrices. For tip i of group k, all matrices are set to NULL, except for the kth, set to a vector of size Nnode + ntaxa, with entry i set to k, and all the others to NA.
Value
A list of size Nnode + ntaxa, as described above.
[Package PhylogeneticEM version 1.8.0 Index]