compute_actualization_matrix_ultrametric {PhylogeneticEM} | R Documentation |
Compute Matrix W of actualization (Ultrametric case)
Description
compute_actualization_matrix_ultrametric
computes a squares p*Nedge bloc diagonal
matrix of the (I_p - exp(-A * (h - t_pa(j))))_{j node}.
Usage
compute_actualization_matrix_ultrametric(
tree,
selection.strength,
times_shared = compute_times_ca(tree)
)
Arguments
tree |
a phylogenetic tree. |
selection.strength |
the selection strength of the process. |
times_shared |
a matrix, result of function |
Details
Careful: the root is not taken into account in this function.
Value
Matrix of size p*Nedge
[Package PhylogeneticEM version 1.8.0 Index]