GetReplTable {MHCtools} | R Documentation |
GetReplTable function
Description
GetReplTable
uses the output files produced by the ReplMatch()
function to produce a table with the replicate sets and their respective mean
proportion of incongruent sequences.
Usage
GetReplTable(filepath)
Arguments
filepath |
is a user defined path to the folder where the output files from the ReplMatch() function have been saved. |
Details
If you publish data or results produced with MHCtools, please cite both of the following references: Roved, J. (2022). MHCtools: Analysis of MHC data in non-model species. Cran. Roved, J. (2024). MHCtools 1.5: Analysis of MHC sequencing data in R. In S. Boegel (Ed.), HLA Typing: Methods and Protocols (2nd ed., pp. 275–295). Humana Press. https://doi.org/10.1007/978-1-0716-3874-3_18
Value
A table with the mean proportion of incongruent sequences for each replicate set.
See Also
Examples
filepath <- system.file("extdata/ReplMatchOut/", package="MHCtools")
GetReplTable(filepath)