gseq.extract {misha} | R Documentation |
Returns DNA sequences
Description
Returns DNA sequences for given intervals
Usage
gseq.extract(intervals = NULL)
Arguments
intervals |
intervals for which DNA sequence is returned |
Details
This function returns an array of sequence strings for each interval from 'intervals'. If intervals contain an additional 'strand' column and its value is '-1', the reverse-complementary sequence is returned.
Value
An array of character strings representing DNA sequence.
See Also
Examples
gdb.init_examples()
intervs <- gintervals(c(1, 2), 10000, 10020)
gseq.extract(intervs)
[Package misha version 4.3.6 Index]