predict_topology {pureseqtmr} | R Documentation |
Predict the topology of a proteome
predict_topology(
fasta_filename,
folder_name = get_default_pureseqtm_folder(),
topology_filename = tempfile(fileext = ".top")
)
fasta_filename |
path to a FASTA file |
folder_name |
superfolder of PureseqTM.
The superfolder's name is |
topology_filename |
name of the file to save a protein's topology to |
a tibble with the columns 'name' and 'topology', where the 'name' column hold all the proteins' names, and 'topology' contains all respective topologies.
Richèl J.C. Bilderbeek
if (is_pureseqtm_installed()) {
fasta_filename <- get_example_filename("1bhaA.fasta")
predict_topology(fasta_filename)
}