sparcc {microeco}R Documentation

sparcc wrapper

Description

An implementation of SparCC R code modified from <https://github.com/zdk123/SpiecEasi> based on Friedman et al. (2012) <doi:10.1371/journal.pcbi.1002687>.

Usage

sparcc(data, iter = 20, inner_iter = 10, th = 0.1)

Arguments

data

Community count data matrix

iter

Number of iterations in the outer loop

inner_iter

Number of iterations in the inner loop

th

absolute value of correlations below this threshold are considered zero by the inner SparCC loop.

See Also

sparccboot


[Package microeco version 0.2.1 Index]