sparcc {microeco} | R Documentation |
An implementation of SparCC R code modified from <https://github.com/zdk123/SpiecEasi> based on Friedman et al. (2012) <doi:10.1371/journal.pcbi.1002687>.
sparcc(data, iter = 20, inner_iter = 10, th = 0.1)
data |
Community count data matrix |
iter |
Number of iterations in the outer loop |
inner_iter |
Number of iterations in the inner loop |
th |
absolute value of correlations below this threshold are considered zero by the inner SparCC loop. |