visualize_spatial_multinetwork {STDistance} | R Documentation |
Visualize spatial relationships between multiple cell types
Description
Visualize spatial relationships between multiple cell types
Usage
visualize_spatial_multinetwork(
spatial_data,
sample,
reference_type,
target_types,
x_col = "pxl_row_in_fullres",
y_col = "pxl_col_in_fullres",
type_col = "Epi_strom",
color_palette = NULL,
point_alpha = 0.7,
line_alpha = 0.5,
point_size = 1.5,
line_width = 0.3,
show_legend = TRUE
)
Arguments
spatial_data |
Spatial coordinates data frame |
sample |
Sample name in the spatial transcriptome data |
reference_type |
Reference cell type (character vector of length 1) |
target_types |
Target cell type(s) (character vector of 1 or more) |
x_col |
Column name for x-coordinates |
y_col |
Column name for y-coordinates |
type_col |
Column name for cell type information |
color_palette |
Named vector of colors for cell types |
point_alpha |
Transparency level for points |
line_alpha |
Transparency level for connection lines |
point_size |
Size of points in plot |
line_width |
Width of connection lines |
show_legend |
Logical, whether to show legend |
Value
A ggplot object showing the spatial relationships
Examples
visualize_spatial_multinetwork(posi, sample="SP8",reference_type="Macrophage",
target_type=c("Epithelial_cells_A","Epithelial_cells_B"),
type_col = "celltype_ABCDepi")
[Package STDistance version 0.6.6 Index]