tissue_posi {STDistance}R Documentation

tissue_posi

Description

Position of the spots from spatial transcriptome data.

Usage

data("tissue_posi")

Format

A data frame with 9984 observations on the following 9 variables.

barcode

a character vector

in_tissue

a numeric vector

array_row

a numeric vector

array_col

a numeric vector

pxl_row_in_fullres

a numeric vector

pxl_col_in_fullres

a numeric vector

Sample

a character vector

Sampleid

a numeric vector

Newbarcode

a character vector

Details

Please find the tissue_positions.csv from the spaceranger output files: ./out/spatial/tissue_positions.csv Multiple samples should be merged together, adding "samples" and "Newbarcode" columns.

Source

This study.

References

Wang, Z., Yang, L., Yang, S., Li, G., Xu, M., Kong, B., Shao, C., & Liu, Z. (2025). Isoform switch of CD47 provokes macrophage-mediated pyroptosis in ovarian cancer. bioRxiv, 2025.2004.2017.649282. https://doi.org/10.1101/2025.04.17.649282

Examples

data(tissue_posi)
## maybe str(tissue_posi) ; plot(tissue_posi) ...

[Package STDistance version 0.6.6 Index]