tissue_posi {STDistance} | R Documentation |
tissue_posi
Description
Position of the spots from spatial transcriptome data.
Usage
data("tissue_posi")
Format
A data frame with 9984 observations on the following 9 variables.
barcode
a character vector
in_tissue
a numeric vector
array_row
a numeric vector
array_col
a numeric vector
pxl_row_in_fullres
a numeric vector
pxl_col_in_fullres
a numeric vector
Sample
a character vector
Sampleid
a numeric vector
Newbarcode
a character vector
Details
Please find the tissue_positions.csv from the spaceranger output files: ./out/spatial/tissue_positions.csv Multiple samples should be merged together, adding "samples" and "Newbarcode" columns.
Source
This study.
References
Wang, Z., Yang, L., Yang, S., Li, G., Xu, M., Kong, B., Shao, C., & Liu, Z. (2025). Isoform switch of CD47 provokes macrophage-mediated pyroptosis in ovarian cancer. bioRxiv, 2025.2004.2017.649282. https://doi.org/10.1101/2025.04.17.649282
Examples
data(tissue_posi)
## maybe str(tissue_posi) ; plot(tissue_posi) ...
[Package STDistance version 0.6.6 Index]