Spatial Transcriptomics Distance Calculation and Visualization


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Documentation for package ‘STDistance’ version 0.6.6

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calculate_correlations Perform correlation analysis between spatial features and distance metrics with visualization
calculate_nearest_distances Calculate nearest distances between cell types
distance_results distance_results
metadata Metadata
normalize_spatial Normalize spatial coordinates
plot_distance_boxplot Visualize Nearest Neighbor Distances with Boxplot and Mean ± SEM
plot_radial_distance Radial Distance Visualization with Collision Avoidance
posi posi
tissue_posi tissue_posi
tissue_posi_normalized tissue_posi_normalized
visualize_spatial_gradient Visualize spatial network with expression gradient
visualize_spatial_multinetwork Visualize spatial relationships between multiple cell types
visualize_spatial_network Visualize spatial relationships between cell types