metadata {STDistance} | R Documentation |
Metadata
Description
Metadata of a Seurat Object.
Usage
data("metadata")
Format
A data frame with 293 observations on the following 9 variables.
orig.ident
a character vector
nCount_Spatial
a numeric vector
nFeature_Spatial
a numeric vector
nCount_SCT
a numeric vector
nFeature_SCT
a numeric vector
integrated_snn_res.0.8
a numeric vector
seurat_clusters
a numeric vector
celltype_ABCDepi
a character vector
gen2_SPLIz_numeric
a numeric vector
Details
Metadata dataframe can be exported from Seurat Object as follows. The Seurat Object should be fully annotated and the metadata dataframe should included: orig.ident, celltype, the target gene expression, splicing index (SpliZ), etc.
Source
This study.
References
Wang, Z., Yang, L., Yang, S., Li, G., Xu, M., Kong, B., Shao, C., & Liu, Z. (2025). Isoform switch of CD47 provokes macrophage-mediated pyroptosis in ovarian cancer. bioRxiv, 2025.2004.2017.649282. https://doi.org/10.1101/2025.04.17.649282
Examples
data(metadata)
## maybe str(metadata) ; plot(metadata) ...
[Package STDistance version 0.6.6 Index]