Detection of Evolutionary Shifts in Both Optimal Value and Variance


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Documentation for package ‘ShiVa’ version 1.0.1

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backward_correction Backward Selection for OU Model Shift Correction
fit_OU_mean_var Fit OU Model with Shifts in Mean and Variance
generate_design_matrix Generate Design Matrix
get_mean_var_shifts Estimate Shifts in Optimal Trait Values and Variance
get_mean_var_shifts_model_selection Model Selection for OU Shifts in Optimal value and Variance
OU.vcv OU.vcv
plot.ShiftModel Plot Method for ShiftModel Objects
print.summary.ShiftModel Print Method for Summary of ShiftModel
ShiVa ShiVa: Automatic Shift Detection in Mean and Variance
soft_thresholding Soft Thresholding
summary.ShiftModel Summary of a ShiVa Shift Model
update_step_gamma Update Step for Gamma