rba_uniprot_epitope_search {rbioapi} | R Documentation |
Search UniProt Epitopes
Description
Use this function to search epitope data associated to UniProt entities, using various criteria such as UniProt accession, epitope sequence, IEDB ID, and match score.
Usage
rba_uniprot_epitope_search(
accession = NULL,
epitope_sequence = NULL,
iedb_id = NULL,
match_score = NULL,
...
)
Arguments
accession |
UniProtKB primary or secondary accession(s). You can supply up to 100 accession numbers. |
epitope_sequence |
(Character) Epitope's proteins sequence |
iedb_id |
(Numeric) EIDB epitope Identifier(s). You can supply up to 20 accession numbers. |
match_score |
Integer: Minimum alignment score for the antigen sequence and the target protein sequence. |
... |
rbioapi option(s). See |
Value
A List where each element corresponds to one UniProt entity returned by your search query. The element itself is a sub-list containing all information that UniProt has about that entity.
Corresponding API Resources
"GET https://www.ebi.ac.uk/proteins/api/epitope"
See Also
Other "UniProt - Epitopes":
rba_uniprot_epitope()
,
rba_uniprot_rna_edit()
Examples
rba_uniprot_epitope_search(accession = c("Q84ZX5", "P36222"))
rba_uniprot_epitope_search(epitope_sequence = "DKKCIEWEKAQHGA")
rba_uniprot_epitope_search(iedb_id = 20354)