rba_enrichr_libs {rbioapi}R Documentation

Retrieve a List of available libraries from Enrichr

Description

This function retrieves a list of libraries available in Enrichr along with their associated statistics. Each library represents a collection of gene sets that can be used for enrichment analysis.

Usage

rba_enrichr_libs(organism = "human", store_in_options = TRUE, ...)

Arguments

organism

(default = "human") Which model organism version of Enrichr to use? Available options are: "human", (H. sapiens & M. musculus), "fly" (D. melanogaster), "yeast" (S. cerevisiae), "worm" (C. elegans) and "fish" (D. rerio).

store_in_options

logical: (default = TRUE) Should a list of available Enrichr libraries be saved as a global option?

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Details

By default, this function will save the library names as a global option ("rba_enrichr_libs") for other Enrichr functions that internally require the names of Enrichr libraries. You should call this function once per R session with the argument 'store_in_options = TRUE' before using rba_enrichr_enrich or rba_enrichr. However, if you do not explicitly call it, rbioapi will automatically execute this function in the background the when it is needed.

Please note that rba_enrichr provides a one-step and more convenient way to automatically handle this and other required function calls needed to perform gene set enrichment analysis with Enrichr.

Value

A data frame with the names of available library in Enrichr and their statistics.

Corresponding API Resources

"GET https://maayanlab.cloud/Enrichr/datasetStatistics"

References

See Also

rba_enrichr

Other "Enrichr": rba_enrichr(), rba_enrichr_add_background(), rba_enrichr_add_list(), rba_enrichr_enrich(), rba_enrichr_gene_map(), rba_enrichr_view_list()

Examples


rba_enrichr_libs()



[Package rbioapi version 0.8.3 Index]