rba_enrichr_view_list {rbioapi} | R Documentation |
View an Uploaded Gene List
Description
Retrieve the list of uploaded genes with a given 'user list ID'.
Usage
rba_enrichr_view_list(
user_list_id,
organism = "human",
speedrichr = FALSE,
...
)
Arguments
user_list_id |
a user list ID returned after uploading a gene
list using |
organism |
(default = "human") Which model organism version of Enrichr to use? Available options are: "human", (H. sapiens & M. musculus), "fly" (D. melanogaster), "yeast" (S. cerevisiae), "worm" (C. elegans) and "fish" (D. rerio). |
speedrichr |
logical (default = FALSE) Did you upload your gene list to speedrichr API? (i.e. did you intend to use this gene list along with a background gene list?) |
... |
rbioapi option(s). See |
Value
A list containing the genes and description associated to the supplied user_list_id.
Corresponding API Resources
"GET https://maayanlab.cloud/Enrichr/view"
References
Chen, E.Y., Tan, C.M., Kou, Y. et al. Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool. Bioinformatics 14, 128 (2013). https://doi.org/10.1186/1471-2105-14-128
Maxim V. Kuleshov, Matthew R. Jones, Andrew D. Rouillard, Nicolas F. Fernandez, Qiaonan Duan, Zichen Wang, Simon Koplev, Sherry L. Jenkins, Kathleen M. Jagodnik, Alexander Lachmann, Michael G. McDermott, Caroline D. Monteiro, Gregory W. Gundersen, Avi Ma’ayan, Enrichr: a comprehensive gene set enrichment analysis web server 2016 update, Nucleic Acids Research, Volume 44, Issue W1, 8 July 2016, Pages W90–W97, https://doi.org/10.1093/nar/gkw377
Xie, Z., Bailey, A., Kuleshov, M. V., Clarke, D. J. B., Evangelista, J. E., Jenkins, S. L., Lachmann, A., Wojciechowicz, M. L., Kropiwnicki, E., Jagodnik, K. M., Jeon, M., & Ma’ayan, A. (2021). Gene set knowledge discovery with Enrichr. Current Protocols, 1, e90. doi: 10.1002/cpz1.90
See Also
Other "Enrichr":
rba_enrichr()
,
rba_enrichr_add_background()
,
rba_enrichr_add_list()
,
rba_enrichr_enrich()
,
rba_enrichr_gene_map()
,
rba_enrichr_libs()
Examples
## Not run:
rba_enrichr_view_list(user_list_id = 11111)
## End(Not run)