getscores {pKSEA} | R Documentation |
Sum score contributions for each kinase across all phosphopeptides
Description
Sum score contributions for each kinase across all phosphopeptides
Usage
getscores(matched_data)
Arguments
matched_data |
Input with calculated contributions |
Value
A dataframe with each kinase as a row and raw kinase activity change score (KAC) calculated
Examples
#Read in example summary statistics dataset from csv
summarydata_ex <- read.csv(system.file("extdata", "example_data1.csv", package="pKSEA"))
#Get matched data using predictions from NetworKIN
matched_data_ex <- get_matched_data(summarydata_ex, NetworKINPred_db)
#Calculate contributions
calc_ex <- calc_contribution(matched_data_ex)
#Calculate kinase activity change scores
kac_ex <- getscores(calc_ex)
[Package pKSEA version 0.0.1 Index]