calc_distance {colorrepel} | R Documentation |
Distance calculations for spatial coord
Description
Distance calculations for spatial coord
Usage
calc_distance(
coord,
metadata,
cluster_col = "cluster",
collapse_to_cluster = FALSE
)
Arguments
coord |
dataframe or matrix of spatial coordinates, cell barcode as rownames |
metadata |
data.frame or vector containing cluster assignments per cell. Order must match column order in supplied matrix. If a data.frame provide the cluster_col parameters. |
cluster_col |
column in metadata with cluster number |
collapse_to_cluster |
instead of reporting min distance to cluster per cell, summarize to cluster level |
Value
min distance matrix
[Package colorrepel version 0.4.3 Index]