Multivariate Spatio-Temporal Models using Structural Equations


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Documentation for package ‘tinyVAST’ version 1.2.0

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add_predictions Add predictions to data-list
bering_sea Survey domain for the eastern and northern Bering Sea surveys
bering_sea_pollock_ages Survey catch-rates at age for Alaska pollock in the Eastern and Northern Bering Sea
bering_sea_pollock_vast Estimated proportion-at-age for Alaska pollock using VAST
cAIC Calculate conditional AIC
classify_variables Classify variables path
conditional_gmrf Conditional simulation from a GMRF
condition_and_density Condition and density example
delta_gamma Additional families
delta_lognormal Additional families
deviance_explained Calculate deviance explained
Families Additional families
GetResponse.tinyVAST Get response
get_data.tinyVAST Get data
integrate_output Integration for target variable
logLik.tinyVAST Extract the (marginal) log-likelihood of a tinyVAST model
make_dsem_ram Make a RAM (Reticular Action Model)
make_eof_ram Make a RAM (Reticular Action Model)
make_sem_ram Make a RAM (Reticular Action Model) from a SEM (structural equation model)
parse_path Parse path
predict.tinyVAST Predict using vector autoregressive spatio-temporal model
print.tinyVAST print summary of tinyVAST model
project Project tinyVAST to future times (EXPERIMENTAL)
red_snapper Presence/absence, count, and biomass data for red snapper
red_snapper_shapefile Shapefile for red snapper analysis
reload_model Reload a previously fitted model
residuals.tinyVAST Calculate deviance or response residuals for tinyVAST
rmvnorm_prec Multivariate Normal Random Deviates using Sparse Precision
rotate_pca Rotate factors to match Principal-Components Analysis
salmon_returns North Pacific salmon returns
sample_variable Sample from predictive distribution of a variable
sea_ice Arctic September sea ice concentrations
sfnetwork_evaluator Construct projection matrix for stream network
sfnetwork_mesh Make mesh for stream network
simulate.tinyVAST Simulate new data from a fitted model
simulate_sfnetwork Simulate GMRF for stream network
summary.tinyVAST summarize tinyVAST
term_covariance Extract covariance
tinyVAST Fit vector autoregressive spatio-temporal model
tinyVASTcontrol Control parameters for tinyVAST
vcov.tinyVAST Extract Variance-Covariance Matrix