'DataSHIELD' Server Site Base Functions


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Documentation for package ‘dsBase’ version 6.3.3

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A B C D E G H I K L M N Q R S T U V

-- A --

absDS Computes the absolute values of the input variable
asCharacterDS Coerces an R object into class character
asDataMatrixDS asDataMatrixDS a serverside assign function called by ds.asDataMatrix
asFactorDS1 Determines the levels of the input variable in each single study
asFactorDS2 Converts a numeric vector into a factor
asFactorSimpleDS Converts a numeric vector into a factor
asIntegerDS Coerces an R object into class integer
asListDS asListDS a serverside aggregate function called by ds.asList
asLogicalDS Coerces an R object into class numeric
asMatrixDS Coerces an R object into a matrix
asNumericDS Coerces an R object into class numeric
aucDS aucDS an aggregate function called by ds.auc

-- B --

blackBoxDS Secure ranking of "V2BR" (vector to be ranked) across all sources
blackBoxRanksDS Secure ranking of "V2BR" (vector to be ranked) across all sources
BooleDS BooleDS
boxPlotGGDS Create the identity stats and necessary data to draw a plot on the client
boxPlotGG_data_TreatmentDS Arrange data frame to pass it to the boxplot function
boxPlotGG_data_Treatment_numericDS Arrange vector to pass it to the boxplot function
bp_standardsDS Calculates Blood pressure z-scores

-- C --

cbindDS cbindDS called by ds.cbind
cDS Concatenates objects into a vector or list
changeRefGroupDS Changes a reference level of a factor
checkNegValueDS Checks if a numeric variable has negative values
checkPermissivePrivacyControlLevel checkPermissivePrivacyControlLevel
classDS Returns the class of an object
colnamesDS Returns the column names of a data frame or matrix
completeCasesDS completeCasesDS: an assign function called by ds.completeCases
corDS Computes the sum of each variable and the sum of products for each pair of variables
corTestDS Tests for correlation between paired samples
covDS Computes the sum of each variable and the sum of products for each pair of variables

-- D --

dataFrameDS dataFrameDS called by ds.dataFrame
dataFrameFillDS dataFrameFillDS
dataFrameSortDS Sorting and reordering data frames, vectors or matrices
dataFrameSubsetDS1 dataFrameSubsetDS1 an aggregate function called by ds.dataFrameSubset
dataFrameSubsetDS2 dataFrameSubsetDS2 an assign function called by ds.dataFrameSubset
densityGridDS Generates a density grid with or without a priori defined limits
dimDS Returns the dimension of a data frame or matrix
dmtC2SDS Copy a clientside data.frame, matrix or tibble (DMT) to the serverside.

-- E --

elsplineDS Basis for a piecewise linear spline with meaningful coefficients
extractQuantilesDS1 Secure ranking of "V2BR" (vector to be ranked) across all sources and use of these ranks to estimate global quantiles across all studies
extractQuantilesDS2 Secure ranking of "V2BR" (vector to be ranked) across all sources and use of these ranks to estimate global quantiles across all studies

-- G --

gamlssDS gamlssDS an aggregate function called by ds.galmss
getWGSRDS Computes the WHO Growth Reference z-scores of anthropometric data
glmDS1 glmDS1 called by ds.glm
glmDS2 glmDS2 called by ds.glm
glmerSLMADS.assign Fitting generalized linear mixed effect models - serverside function
glmerSLMADS2 Fitting generalized linear mixed effect models - serverside function
glmPredictDS.ag predict regression responses from a glm object
glmPredictDS.as predict regression responses from a glm object
glmSLMADS.assign Fit a Generalized Linear Model (GLM) with pooling via Study Level Meta-Analysis (SLMA)
glmSLMADS1 Fit a Generalized Linear Model (GLM) with pooling via Study Level Meta-Analysis (SLMA)
glmSLMADS2 Fit a Generalized Linear Model (GLM) with pooling via Study Level Meta-Analysis (SLMA)
glmSummaryDS.ag summarize a glm object on the serverside
glmSummaryDS.as summarize a glm object on the serverside

-- H --

heatmapPlotDS Calculates the coordinates of the centroid of each n nearest neighbours
hetcorDS Heterogeneous Correlation Matrix
histogramDS1 returns the minimum and the maximum of the input numeric vector
histogramDS2 Computes a histogram of the input variable without plotting.

-- I --

igb_standardsDS Converts birth measurements to intergrowth z-scores/centiles
isNaDS Checks if a vector is empty
isValidDS Checks if an input is valid

-- K --

kurtosisDS1 Calculates the kurtosis of a numeric variable
kurtosisDS2 Calculates the kurtosis of a numeric variable

-- L --

lengthDS Returns the length of a vector or list
levelsDS Returns the levels of a factor vector
lexisDS1 lexisDS1
lexisDS2 lexisDS2
lexisDS3 @title lexisDS3
listDisclosureSettingsDS listDisclosureSettingsDS
listDS Coerce objects into a list
lmerSLMADS.assign Fitting linear mixed effect models - serverside function
lmerSLMADS2 Fitting linear mixed effect models - serverside function
lsDS lists all objects on a serverside environment
lsplineDS Basis for a piecewise linear spline with meaningful coefficients

-- M --

matrixDetDS1 matrixDetDS aggregate function called by ds.matrixDet.report
matrixDetDS2 matrixDetDS assign function called by ds.matrixDet
matrixDiagDS matrixDiagDS assign function called by ds.matrixDiag
matrixDimnamesDS matrixDimnamesDS assign function called by ds.matrixDimnames
matrixDS matrixDS assign function called by ds.matrix
matrixInvertDS matrixInvertDS serverside assign function called by ds.matrixInvert
matrixMultDS matrixMultDS serverside assign function called by ds.matrixMult
matrixTransposeDS matrixTransposeDS serverside assign function called by ds.matrixTranspose
meanDS Computes statistical mean of a vectores
meanSdGpDS MeanSdGpDS
mergeDS mergeDS (assign function) called by ds.merge
messageDS messageDS
metadataDS Returns the metadata, if any, about the specified variable
miceDS Aggregate function called by ds.mice
minMaxRandDS Secure ranking of "V2BR" (vector to be ranked) across all sources

-- N --

namesDS Return the names of a list object
nsDS Generate a Basis Matrix for Natural Cubic Splines
numNaDS Counts the number of missing values

-- Q --

qlsplineDS Basis for a piecewise linear spline with meaningful coefficients
quantileMeanDS Generates quantiles and mean information without maximum and minimum

-- R --

rangeDS returns the minimum and maximum of a numeric vector
ranksSecureDS1 Secure ranking of "V2BR" (vector to be ranked) across all sources
ranksSecureDS2 Secure ranking of "V2BR" (vector to be ranked) across all sources
ranksSecureDS3 Secure ranking of "V2BR" (vector to be ranked) across all sources
ranksSecureDS4 Secure ranking of "V2BR" (vector to be ranked) across all sources
ranksSecureDS5 Secure ranking of "V2BR" (vector to be ranked) across all sources
rbindDS rbindDS called by ds.rbind
rBinomDS rBinomDS serverside assign function
recodeLevelsDS Recodes the levels of a categorical variables
recodeValuesDS recodeValuesDS an assign function called by ds.recodeValues
repDS repDS called by ds.rep
replaceNaDS Replaces the missing values in a vector
reShapeDS reShapeDS (assign function) called by ds.reShape
rmDS rmDS an aggregate function called by ds.rm
rNormDS rNormDS serverside assign function
rowColCalcDS Computes sums and means of rows or columns of numeric arrays
rPoisDS rPoisDS serverside assign function
rUnifDS rUnifDS serverside assign function

-- S --

sampleDS random sampling and permuting of vectors, dataframes and matrices
scatterPlotDS Calculates the coordinates of the data to be plot
seqDS seqDS a serverside assign function called by ds.seq
setSeedDS setSeedDs called by ds.setSeed, ds.rNorm, ds.rUnif, ds.rPois and ds.rBinom
skewnessDS1 Calculates the skewness of a numeric variable
skewnessDS2 Calculates the skewness of a numeric variable
sqrtDS Computes the square root values of the input variable
subsetByClassDS Breaks down a dataframe or a factor into its sub-classes
subsetDS Generates a valid subset of a table or a vector

-- T --

table1DDS Creates 1-dimensional contingency tables
table2DDS table2DDS (aggregate function) called by ds.table2D
tableDS tableDS is the first of two serverside aggregate functions called by ds.table
tableDS.assign tableDS.assign is the serverside assign function called by ds.table
tableDS2 tableDS is the second of two serverside aggregate functions called by ds.table
tapplyDS tapplyDS called by ds.tapply
tapplyDS.assign tapplyDS.assign called by ds.tapply.assign
testObjExistsDS testObjExistsDS

-- U --

uniqueDS Applies the 'unique' method to a server-side variable.
unListDS 'unListDS' a serverside assign function called by 'ds.unList'

-- V --

varDS Computes the variance of vector
vectorDS Creates a vector on the server-side.