fit_plot {shinyMixR} | R Documentation |
Create fit plot
Description
Creates a fit plot either using the xpose.nlmixr package or using a default ggplot call
Usage
fit_plot(
dfrm,
type = "xpose",
by = "ID",
idv = "TIME",
obs = "DV",
pred = "PRED",
ipred = "IPRED",
grp = "ID",
logy = TRUE,
scales = "fixed",
mdlnm = NULL,
outnm = NULL,
projloc = ".",
...
)
Arguments
dfrm |
data frame as created by the nlmixr function |
type |
character defining the type of plot that should be created. currently "xpose" and "user" are supported for xpose or ggplot style of plots |
by |
character vector with variables for facetting |
idv |
independent variable or x variable |
obs |
variable with observed data points |
pred |
variable with predicted data points |
ipred |
variable with individual predicted data points |
grp |
variable for grouping (mainly to draw separate lines) |
logy |
logical if y-axis should be displayed on log scale |
scales |
character of length one defining the scale parameter of ggplot (e.g. "fixed", "free","free_y",etc) |
mdlnm |
character with name of the model |
outnm |
character with name of the output file (see details) |
projloc |
character with the base location of the shinyMixR project |
... |
Details
In case a model is saved, a directory with the name of the model is created within the analysis folder of the current project. Then within this folder the file is saved as outnm. This method was chosen so the interface can easily index applicable files for a certain model. However, this means that output is always saved in this directly regardless of the location of outnm
Value
in case no outnm is defined a ggplot object will be returned otherwise the results are saved to disk
Author(s)
Richard Hooijmaijers
Examples
## Not run:
fit_plot(res)
## End(Not run)