plotResults {mrbin} | R Documentation |
A function for plotting quality indicators, including PCA plots.
Description
This function plots boxplots (bin-wise and sample-wise) as visual quality indicators. It also performs PCA, then plots PC1 and PC2 and loading plots.
Usage
plotResults(mrbinResults, defineGroups = TRUE, process = TRUE, silent = FALSE)
Arguments
mrbinResults |
An mrbin object |
defineGroups |
Should group membership be highlighted in PCA? |
process |
If set to FALSE, the file name will be extended by "Raw" to indicate that data has not been processed yet |
silent |
If set to TRUE, plots will be saved but not shown for the binning step for speed purposes |
Value
None
Examples
resetEnv()#clean up previous data from the package environment
results<-mrbin(silent=TRUE,setDefault=FALSE,parameters=list(dimension="2D",
binRegion=c(8,1,15,140),binwidth2D=0.2,binheight=4,solventRegion=c(5.5,4.2),
PQNScaling="No",noiseRemoval="Yes",trimZeros="Yes",
fixNegatives="No",logTrafo="No",PCA="No",signal_to_noise2D=10,
example=TRUE,#only used for the package examples
NMRfolders=c(system.file("extdata/1.mr2",package="mrbin"),
system.file("extdata/2.mr2",package="mrbin")),
NMRvendor="mrbin"))
plotResults(results)
[Package mrbin version 1.9.4 Index]