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Documentation for package ‘otargen’ version 2.0.0

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adverseEventsQuery Retrieve Adverse Events data for a specified drug.
chemblQuery Retrieve ChEMBL data for a specified gene and disease.
clinVarQuery Retrieve ClinVar data for a specified gene and disease.
compGenomicsQuery Retrieve Comparative Genomics data for a specified gene.
depMapQuery Retrieve DepMap Essentiality data for a specified gene.
europePMCQuery Retrieve Europe PMC data for a specified gene and disease.
geneBurdenQuery Retrieve Gene Burden data for a specified gene and disease.
geneOntologyQuery Retrieve Gene Ontology data for a specified gene.
geneticConstraintQuery Retrieve Genetic Constraint data for a specified gene.
genomicsEnglandQuery Retrieve Genomics England data for a specified gene and disease.
gwasColocalisation Retrieve calculated GWAS colocalisation data
gwasCredibleSet Retrieve GWAS credible set data
gwasCredibleSetsQuery Retrieve GWAS Credible Sets data for a specified target and disease.
hallmarksQuery Retrieve Cancer Hallmarks data for a specified gene.
indicationsQuery Retrieve Indications data for a specified drug.
interactionsQuery Retrieve Interactions data for a specified gene.
knownDrugsChemblQuery Retrieve Known Drugs data for a specified drug.
knownDrugsGeneQuery Retrieve Known Drugs data for a specified gene.
locus2GeneQuery Retrieve Locus-to-Gene Predictions data for a specified study locus.
mechanismsOfActionQuery Retrieve Mechanisms of Action data for a specified drug.
mousePhenotypesQuery Retrieve Mouse Phenotypes data for a specified gene.
orphanetQuery Retrieve Orphanet data for a specified gene and disease.
overlapInfoForStudy Retrieves overlap info for a study and a list of studies
pathwaysQuery Retrieve Pathways data for a specified gene.
pharmacogenomicsChemblQuery Retrieve Pharmacogenomics data for a specified drug.
pharmacogenomicsGeneQuery Retrieve Pharmacogenomics data for a specified gene.
pharmacogenomicsVariantQuery Retrieve Pharmacogenomics data for a specified variant.
qtlCredibleSetsQuery Retrieve QTL Credible Sets data for a specified variant.
safetyQuery Retrieve Safety Liabilities data for a specified gene.
sharedTraitStudiesQuery Retrieve Shared Trait Studies data for specified diseases.
uniprotLiteratureQuery Retrieve UniProt Literature data for a specified gene and disease.
uniProtVariantsQuery Retrieve UniProt Variants data for a specified variant.
variantEffectPredictorQuery Retrieve Variant Effect Predictor data for a specified variant.
variantEffectQuery Retrieve Variant Effect data for a specified variant.
variantsQuery Retrieve Variants data for a specified study locus.