denv_data {topolow}R Documentation

Dengue Virus (DENV) Titer Data

Description

A dataset containing neutralization titer data for Dengue virus. This data can be used to create antigenic maps and explore the antigenic relationships between different DENV strains.

Usage

denv_data

Format

A data frame with the following columns:

virus_strain

Character, the name of the virus strain.

serum_strain

Character, the name of the serum strain.

titer

Character, the neutralization titer value. May include values like '<10' or '>1280'.

virusYear

Numeric, the year the virus was isolated.

serumYear

Numeric, the year the serum was collected.

cluster

Factor, the cluster or serotype assignment for the strains.

color

Character, a color associated with the cluster for plotting.

Source

Katzelnick, L.C., et al. (2019). An antigenically diverse, representative panel of dengue viruses for neutralizing antibody discovery and vaccine evaluation. eLife. doi:10.7554/eLife.42496


[Package topolow version 1.0.0 Index]