count.ibd {MIDASim} | R Documentation |
IBD microbiome dataset
Description
A filtered microbiome dataset of patients with IBD(Inflammatory Bowel Disease) in Human Microbiome Project 2 (HMP2).
Usage
data(count.ibd)
Format
An object of class matrix
(inherits from array
) with 146 rows and 614 columns.
References
Lloyd-Price, J., Arze, C., Ananthakrishnan, A.N. *et al*. Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases. *Nature* 569, 655–662 (2019). https://doi.org/10.1038/s41586-019-1237-9.
Examples
data(count.ibd)
MIDASim.setup(otu.tab = count.ibd, mode = "nonparametric")
[Package MIDASim version 2.0 Index]